Arrate Munoz Barrutia (Arrate Munoz-Barrutia, Arrate Muñoz-Barrutia, Arrate Muñoz Barrutia, Arrate Muñoz Barrutia)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 42

Top Topics

Convolutional Neural Network

Electron Microscopy

Top Venues

bioRxiv : the preprint server for biology

Science advances

Cancer research communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ashley L Kiemen, Cristina Almagro-Pérez, Valentina Matos, Andre Forjaz, Alicia M Braxton, Lucie Dequiedt, Jeeun Parksong, Courtney D Cannon, Xuan Yuan, Sarah M Shin, Jaanvi Mahesh Babu, Elizabeth D Thompson, Toby C Cornish, Won Jin Ho, Laura D Wood, Pei-Hsun Wu, Arrate Munoz Barrutia, Ralph H Hruban, Denis Wirtz
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure. bioRxiv : the preprint server for biology (2024)
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Daniel Xenes, Jordan Matelsky, Brock Wester, Arrate Munoz Barrutia, Ashley L Kiemen, Pei-Hsun Wu, Denis Wirtz
Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping. bioRxiv : the preprint server for biology (2024)
Luke Sorensen, Adam Humenick, Sabrina S B Poon, Myat Noe Han, Narges S Mahdavian, Matthew C Rowe, Ryan Hamnett, Estibaliz Gómez-de-Mariscal, Peter H Neckel, Ayame Saito, Keith Mutunduwe, Christie Glennan, Robert Haase, Rachel M McQuade, Jaime P P Foong, Simon S J Brookes, Julia A Kaltschmidt, Arrate Munoz Barrutia, Sebastian K King, Nicholas A Veldhuis, Simona E Carbone, Daniel P Poole, Pradeep Rajasekhar
Gut Analysis Toolbox: Automating quantitative analysis of enteric neurons. Journal of cell science (2024)
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Vasco Queiroga, Daniel Xenes, Jordan Matelsk, Brock Wester, Arrate Munoz Barrutia, Ashley L Kiemen, Pei-Hsun Wu, Denis Wirtz
Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping. bioRxiv : the preprint server for biology (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R Nair, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle N Karl, Raghav Vij, Gabriella C Russo, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small Extracellular Vesicles Promote Stiffness-mediated Metastasis. Cancer research communications 4 (5) (2024)
Pablo Delgado-Rodriguez, Nicolás Lamanna-Rama, Cassondra Jeanette Saande, Rafael Aldabe, María L Soto-Montenegro, Arrate Munoz Barrutia
Multiscale and multimodal evaluation of autosomal dominant polycystic kidney disease development. Communications biology 7 (1) (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R Nair, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle N Karl, Raghav Vij, Gabriella C Russo, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small Extracellular Vesicles Promote Stiffness-mediated Metastasis. Cancer research communications 4 (5) (2024)
Ashley L Kiemen, Cristina Almagro-Pérez, Valentina Matos, Andre Forjaz, Alicia M Braxton, Lucie Dequiedt, Jeeun Parksong, Courtney D Cannon, Xuan Yuan, Sarah M Shin, Jaanvi Mahesh Babu, Elizabeth D Thompson, Toby C Cornish, Won Jin Ho, Laura D Wood, Pei-Hsun Wu, Arrate Munoz Barrutia, Ralph H Hruban, Denis Wirtz
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure. bioRxiv : the preprint server for biology (2024)
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Vasco Queiroga, Daniel Xenes, Jordan Matelsk, Brock Wester, Arrate Munoz Barrutia, Ashley L Kiemen, Pei-Hsun Wu, Denis Wirtz
Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping. bioRxiv : the preprint server for biology (2024)
Wanlu Lei, Caterina Fuster-Barceló, Gabriel K Reder, Arrate Munoz Barrutia, Wei Ouyang
BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging. Nature methods 21 (8) (2024)
Praful R Nair, Ludmila V Danilova, Estibaliz Gómez-de-Mariscal, Dongjoo Kim, Rong Fan, Arrate Munoz Barrutia, Elana J Fertig, Denis Wirtz
MLL1 regulates cytokine-driven cell migration and metastasis. Science advances 10 (11) (2024)
Praful R Nair, Ludmila V Danilova, Estibaliz Gómez-de-Mariscal, Dongjoo Kim, Rong Fan, Arrate Munoz Barrutia, Elana J Fertig, Denis Wirtz
MLL1 regulates cytokine-driven cell migration and metastasis. Science advances 10 (11) (2024)
Carlos García López de Haro, Stéphane Dallongeville, Thomas Musset, Estibaliz Gómez-de-Mariscal, Daniel Sage, Wei Ouyang, Arrate Munoz Barrutia, Jean-Yves Tinevez, Jean-Christophe Olivo-Marin
JDLL: a library to run deep learning models on Java bioimage informatics platforms. Nature methods 21 (1) (2024)
Praful R Nair, Ludmila V Danilova, Estibaliz Gómez-de-Mariscal, Dongjoo Kim, Rong Fan, Arrate Munoz Barrutia, Elana J Fertig, Denis Wirtz
MLL1 regulates cytokine-driven cell migration and metastasis. Science advances 10 (11) (2024)
Carlos García López de Haro, Stéphane Dallongeville, Thomas Musset, Estibaliz Gómez-de-Mariscal, Daniel Sage, Wei Ouyang, Arrate Munoz Barrutia, Jean-Yves Tinevez, Jean-Christophe Olivo-Marin
JDLL: a library to run deep learning models on Java bioimage informatics platforms. Nature methods (2024)
Carlos García López de Haro, Stéphane Dallongeville, Thomas Musset, Estibaliz Gómez-de-Mariscal, Daniel Sage, Wei Ouyang, Arrate Munoz Barrutia, Jean-Yves Tinevez, Jean-Christophe Olivo-Marin
JDLL: a library to run deep learning models on Java bioimage informatics platforms. Nature methods 21 (1) (2024)
Praful R Nair, Ludmila V Danilova, Estibaliz Gómez-de-Mariscal, Dongjoo Kim, Rong Fan, Arrate Munoz Barrutia, Elana J Fertig, Denis Wirtz
MLL1 regulates cytokine-driven cell migration and metastasis. Science advances 10 (11) (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R Nair, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle N Karl, Raghav Vij, Gabriella C Russo, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small extracellular vesicles promote stiffness-mediated metastasis. Cancer research communications (2024)
Wanlu Lei, Caterina Fuster-Barceló, Gabriel K Reder, Arrate Munoz Barrutia, Wei Ouyang
BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging. Nature methods 21 (8) (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R Nair, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle N Karl, Raghav Vij, Gabriella C Russo, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small Extracellular Vesicles Promote Stiffness-mediated Metastasis. Cancer research communications 4 (5) (2024)
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Vasco Queiroga, Daniel Xenes, Jordan Matelsk, Brock Wester, Arrate Munoz Barrutia, Ashley L Kiemen, Pei-Hsun Wu, Denis Wirtz
Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping. bioRxiv : the preprint server for biology (2024)
Ashley L Kiemen, Cristina Almagro-Pérez, Valentina Matos, Andre Forjaz, Alicia M Braxton, Lucie Dequiedt, Jeeun Parksong, Courtney D Cannon, Xuan Yuan, Sarah M Shin, Jaanvi Mahesh Babu, Elizabeth D Thompson, Toby C Cornish, Won Jin Ho, Laura D Wood, Pei-Hsun Wu, Arrate Munoz Barrutia, Ralph H Hruban, Denis Wirtz
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure. bioRxiv : the preprint server for biology (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R Nair, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle N Karl, Raghav Vij, Gabriella C Russo, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small Extracellular Vesicles Promote Stiffness-mediated Metastasis. Cancer research communications 4 (5) (2024)
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Daniel Xenes, Jordan Matelsky, Brock Wester, Arrate Munoz Barrutia, Ashley L Kiemen, Pei-Hsun Wu, Denis Wirtz
Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping. bioRxiv : the preprint server for biology (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Praful R Nair, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle N Karl, Raghav Vij, Gabriella C Russo, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small extracellular vesicles promote stiffness-mediated metastasis. Cancer research communications (2024)
Ashley L Kiemen, Cristina Almagro-Pérez, Valentina Matos, Andre Forjaz, Alicia M Braxton, Lucie Dequiedt, Jeeun Parksong, Courtney D Cannon, Xuan Yuan, Sarah M Shin, Jaanvi Mahesh Babu, Elizabeth D Thompson, Toby C Cornish, Won Jin Ho, Laura D Wood, Pei-Hsun Wu, Arrate Munoz Barrutia, Ralph H Hruban, Denis Wirtz
3D histology reveals that immune response to pancreatic precancers is heterogeneous and depends on global pancreas structure. bioRxiv : the preprint server for biology (2024)
Praful R Nair, Ludmila V Danilova, Estibaliz Gómez-de-Mariscal, Dongjoo Kim, Rong Fan, Arrate Munoz Barrutia, Elana J Fertig, Denis Wirtz
MLL1 regulates cytokine-driven cell migration and metastasis. Science advances 10 (11) (2024)
Saurabh Joshi, André Forjaz, Kyu Sang Han, Yu Shen, Vasco Queiroga, Daniel Xenes, Jordan Matelsk, Brock Wester, Arrate Munoz Barrutia, Ashley L Kiemen, Pei-Hsun Wu, Denis Wirtz
Generative interpolation and restoration of images using deep learning for improved 3D tissue mapping. bioRxiv : the preprint server for biology (2024)
Praful R Nair, Ludmila V Danilova, Estibaliz Gómez-de-Mariscal, Dongjoo Kim, Rong Fan, Arrate Munoz Barrutia, Elana J Fertig, Denis Wirtz
MLL1 regulates cytokine-driven cell migration and metastasis. Science advances 10 (11) (2024)
Alexandra Sneider, Ying Liu, Bartholomew Starich, Wenxuan Du, Carolyn Marar, Najwa Faqih, Gabrielle E Ciotti, Joo Ho Kim, Sejal Krishnan, Salma Ibrahim, Muna Igboko, Alexus Locke, Daniel M Lewis, Hanna Hong, Michelle Karl, Raghav Vij, Gabriella C Russo, Praful Nair, Estibaliz Gómez-de-Mariscal, Mehran Habibi, Arrate Munoz Barrutia, Luo Gu, T S Karin Eisinger-Mathason, Denis Wirtz
Small extracellular vesicles promote stiffness-mediated metastasis. bioRxiv : the preprint server for biology (2023)
Martin Maška, Vladimír Ulman, Pablo Delgado-Rodriguez, Estibaliz Gómez-de-Mariscal, Tereza Nečasová, Fidel A Guerrero Peña, Tsang Ing Ren, Elliot M Meyerowitz, Tim Scherr, Katharina Löffler, Ralf Mikut, Tianqi Guo, Yin Wang, Jan P Allebach, Rina Bao, Noor M Al-Shakarji, Gani Rahmon, Imad Eddine Toubal, Kannappan Palaniappan, Filip Lux, Petr Matula, Ko Sugawara, Klas E G Magnusson, Layton Aho, Andrew R Cohen, Assaf Arbelle, Tal Ben-Haim, Tammy Riklin Raviv, Fabian Isensee, Paul F Jäger, Klaus H Maier-Hein, Yanming Zhu, Cristina Ederra, Ainhoa Urbiola, Erik Meijering, Alexandre Cunha, Arrate Munoz Barrutia, Michal Kozubek, Carlos Ortiz de Solórzano
The Cell Tracking Challenge: 10 years of objective benchmarking. Nature methods (2023)
Laura Nicolás-Sáenz, Agapito Ledezma, Javier Pascau, Arrate Munoz Barrutia
ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Analysis. Sensors (Basel, Switzerland) 23 (6) (2023)
Laura Nicolás-Sáenz, Agapito Ledezma, Javier Pascau, Arrate Munoz Barrutia
ABANICCO: A New Color Space for Multi-Label Pixel Classification and Color Analysis. Sensors (Basel, Switzerland) 23 (6) (2023)
Clara Gomez-Cruz, Sonia Laguna, Ariadna Bachiller-Pulido, Cristina Quílez, Marina Cañadas-Ortega, Ignacio Albert-Smet, Jorge Ripoll, Arrate Munoz Barrutia
Single Plane Illumination Microscopy for Microfluidic Device Imaging. Biosensors 12 (12) (2022)
Clara Gomez-Cruz, Sonia Laguna, Ariadna Bachiller-Pulido, Cristina Quílez, Marina Cañadas-Ortega, Ignacio Albert-Smet, Jorge Ripoll, Arrate Munoz Barrutia
Single Plane Illumination Microscopy for Microfluidic Device Imaging. Biosensors 12 (12) (2022)
Clara Gomez-Cruz, Sonia Laguna, Ariadna Bachiller-Pulido, Cristina Quílez, Marina Cañadas-Ortega, Ignacio Albert-Smet, Jorge Ripoll, Arrate Munoz Barrutia
Single Plane Illumination Microscopy for Microfluidic Device Imaging. Biosensors 12 (12) (2022)
Veronica Aramendía-Vidaurreta, Pedro M Gordaliza, Marta Vidorreta, Rebeca Echeverría-Chasco, Gorka Bastarrika, Arrate Munoz Barrutia, María A Fernández-Seara
Reduction of motion effects in myocardial arterial spin labeling. Magnetic resonance in medicine (2021)
Daniel Franco-Barranco, Arrate Munoz Barrutia, Ignacio Arganda-Carreras
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes. Neuroinformatics (2021)
Estibaliz Gómez-de-Mariscal, Carlos García-López-de-Haro, Wei Ouyang, Laurène Donati, Emma Lundberg, Michael Unser, Arrate Munoz Barrutia, Daniel Sage
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ. Nature methods 18 (10) (2021)
Amaro Torres-Simón, María Henar Marino, Clara Gómez-Cruz, Marina Cañadas, Miguel Marco, Jorge Ripoll, Juan José Vaquero, Arrate Munoz Barrutia
Development of an Inverted Epifluorescence Microscope for Long-Term Monitoring of Bacteria in Multiplexed Microfluidic Devices. Sensors (Basel, Switzerland) 20 (15) (2020)
Ana Ortega-Gil, Juan José Vaquero, Mario Gonzalez-Arjona, Joaquín Rullas, Arrate Munoz Barrutia
X-ray-based virtual slicing of TB-infected lungs. Scientific reports 9 (1) (2019)
Vladimír Ulman, Martin Maška, Klas E G Magnusson, Olaf Ronneberger, Carsten Haubold, Nathalie Harder, Pavel Matula, Petr Matula, David Svoboda, Miroslav Radojevic, Ihor Smal, Karl Rohr, Joakim Jaldén, Helen M Blau, Oleh Dzyubachyk, Boudewijn Lelieveldt, Pengdong Xiao, Yuexiang Li, Siu-Yeung Cho, Alexandre C Dufour, Jean-Christophe Olivo-Marin, Constantino C Reyes-Aldasoro, Jose A Solis-Lemus, Robert Bensch, Thomas Brox, Johannes Stegmaier, Ralf Mikut, Steffen Wolf, Fred A Hamprecht, Tiago Esteves, Pedro Quelhas, Ömer Demirel, Lars Malmström, Florian Jug, Pavel Tomancak, Erik Meijering, Arrate Munoz Barrutia, Michal Kozubek, Carlos Ortiz de Solórzano
An objective comparison of cell-tracking algorithms. Nature methods 14 (12) (2017)