Lars Malmström

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 28

Top Topics

Mass Spectrometry

Convolutional Neural Network

Gas Chromatography

Top Venues

Nature communications

PLoS computational biology

Communications biology

This page only lists publications with an associated author ORCID identifier.

Publications

Arman Izadi, Yasaman Karami, Eleni Bratanis, Sebastian Wrighton, Hamed Khakzad, Maria Nyblom, Berit Olofsson, Lotta J Happonen, Di Tang, Martin Sundwall, Magdalena Godzwon, Yashuan Chao, Alejandro Gomez Toledo, Tobias Schmidt, Mats Ohlin, Michael Nilges, Johan Malmstöm, Wael Bahnan, Oonagh Shannon, Lars Malmström, Pontus Nordenfelt
The hinge-engineered IgG1-IgG3 hybrid subclass IgGh 47 potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 antibodies. Nature communications 15 (1) (2024)
Arman Izadi, Yasaman Karami, Eleni Bratanis, Sebastian Wrighton, Hamed Khakzad, Maria Nyblom, Berit Olofsson, Lotta J Happonen, Di Tang, Martin Sundwall, Magdalena Godzwon, Yashuan Chao, Alejandro Gomez Toledo, Tobias Schmidt, Mats Ohlin, Michael Nilges, Johan Malmstöm, Wael Bahnan, Oonagh Shannon, Lars Malmström, Pontus Nordenfelt
The hinge-engineered IgG1-IgG3 hybrid subclass IgGh 47 potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 antibodies. Nature communications 15 (1) (2024)
Arman Izadi, Yasaman Karami, Eleni Bratanis, Sebastian Wrighton, Hamed Khakzad, Maria Nyblom, Berit Olofsson, Lotta J Happonen, Di Tang, Martin Sundwall, Magdalena Godzwon, Yashuan Chao, Alejandro Gomez Toledo, Tobias Schmidt, Mats Ohlin, Michael Nilges, Johan Malmstöm, Wael Bahnan, Oonagh Shannon, Lars Malmström, Pontus Nordenfelt
The hinge-engineered IgG1-IgG3 hybrid subclass IgGh 47 potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 antibodies. Nature communications 15 (1) (2024)
Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS computational biology 19 (1) (2023)
Tommaso De Marchi, Paul Theodor Pyl, Martin Sjostrom, Susanne Erika Reinsbach, Sebastian DiLorenzo, Björn Nystedt, Lena Tran, Gyula Pekar, Fredrik Wärnberg, Irma Fredriksson, Per Malmström, Mårten Fernö, Lars Malmström, Johan Malmstöm, Emma Nimeús
Proteogenomics decodes the evolution of human ipsilateral breast cancer. Communications biology 6 (1) (2023)
Tommaso De Marchi, Paul Theodor Pyl, Martin Sjostrom, Susanne Erika Reinsbach, Sebastian DiLorenzo, Björn Nystedt, Lena Tran, Gyula Pekar, Fredrik Wärnberg, Irma Fredriksson, Per Malmström, Mårten Fernö, Lars Malmström, Johan Malmstöm, Emma Nimeús
Proteogenomics decodes the evolution of human ipsilateral breast cancer. Communications biology 6 (1) (2023)
Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS computational biology 19 (1) (2023)
Erik Hartman, Aaron M Scott, Christofer A Q Karlsson, Tirthankar Mohanty, Suvi T Vaara, Adam Linder, Lars Malmström, Johan Malmstöm
Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis. Nature communications 14 (1) (2023)
Tirthankar Mohanty, Christofer A Q Karlsson, Yashuan Chao, Erik Malmström, Eleni Bratanis, Andrietta Grentzmann, Martina Mørch, Victor Nizet, Lars Malmström, Adam Linder, Oonagh Shannon, Johan Malmstöm
A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis. Nature communications 14 (1) (2023)
Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS computational biology 19 (1) (2023)
Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS computational biology 19 (1) (2023)
Tommaso De Marchi, Paul Theodor Pyl, Martin Sjostrom, Susanne Erika Reinsbach, Sebastian DiLorenzo, Björn Nystedt, Lena Tran, Gyula Pekar, Fredrik Wärnberg, Irma Fredriksson, Per Malmström, Mårten Fernö, Lars Malmström, Johan Malmstöm, Emma Nimeús
Proteogenomics decodes the evolution of human ipsilateral breast cancer. Communications biology 6 (1) (2023)
Aaron M Scott, Christofer A Q Karlsson, Tirthankar Mohanty, Erik Hartman, Suvi T Vaara, Adam Linder, Johan Malmstöm, Lars Malmström
Generalized precursor prediction boosts identification rates and accuracy in mass spectrometry based proteomics. Communications biology 6 (1) (2023)
Tommaso De Marchi, Paul Theodor Pyl, Martin Sjostrom, Susanne Erika Reinsbach, Sebastian DiLorenzo, Björn Nystedt, Lena Tran, Gyula Pekar, Fredrik Wärnberg, Irma Fredriksson, Per Malmström, Mårten Fernö, Lars Malmström, Johan Malmstöm, Emma Nimeús
Proteogenomics decodes the evolution of human ipsilateral breast cancer. Communications biology 6 (1) (2023)
Tommaso De Marchi, Paul Theodor Pyl, Martin Sjostrom, Susanne Erika Reinsbach, Sebastian DiLorenzo, Björn Nystedt, Lena Tran, Gyula Pekar, Fredrik Wärnberg, Irma Fredriksson, Per Malmström, Mårten Fernö, Lars Malmström, Johan Malmstöm, Emma Nimeús
Proteogenomics decodes the evolution of human ipsilateral breast cancer. Communications biology 6 (1) (2023)
Carlos Gueto-Tettay, Di Tang, Lotta Happonen, Moritz Heusel, Hamed Khakzad, Johan Malmström, Lars Malmström
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics. PLoS computational biology 19 (1) (2023)
Anahita Bakochi, Tirthankar Mohanty, Paul Theodor Pyl, Carlos Alberto Gueto-Tettay, Lars Malmström, Adam Linder, Johan Malmstöm
Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis. eLife 10 (2021)
Hamed Khakzad, Lotta J Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges, Guy Tran Van Nhieu, Johan Malmstöm, Lars Malmström
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology. PLoS computational biology 17 (1) (2021)
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F Alford, Melanie Aprahamian, Julien S Baker, Kyle A Barlow, Patrick Barth, Benjamin Basanta, Brian J Bender, Kristin Blacklock, Jaume Bonet, Scott E Boyken, Philip G Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E Correia, Brian Coventry, Rachel J Hagey, René M De Jong, Frank DiMaio, Lorna Dsilva, Roland L Dunbrack, Alexander S Ford, Brandon Frenz, Darwin Y Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J Gray, Dominik Gront, Sharon Guffy, Scott Horowitz, Po-Ssu Huang, Thomas Huber, Tim M Jacobs, Jeliazko R Jeliazkov, David K Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R Khar, Sagar D Khare, Firas Khatib, Alisa Khramushin, Indigo C King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W Labonte, Jason K Lai, Gideon Lapidoth, Andrew Leaver-Fay, Steffen Lindert, Thomas Linsky, Nir London, Joseph H Lubin, Sergey Lyskov, Jack Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas A Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó'Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S Pacella, Xingjie Pan, Hahnbeom Park, Ryan E Pavlovicz, Manasi Pethe, Brian G Pierce, Kala Bharath Pilla, Barak Raveh, P Douglas Renfrew, Shourya S Roy Burman, Aliza Rubenstein, Marion F Sauer, Andreas Scheck, William R Schief, Ora Schueler-Furman, Yuval Sedan, Alexander M Sevy, Nikolaos G Sgourakis, Lei Shi, Justin B Siegel, Daniel-Adriano Silva, Shannon Smith, Yifan Song, Amelie Stein, Maria Szegedy, Frank D Teets, Summer B Thyme, Ray Yu-Ruei Wang, Andrew Watkins, Lior Zimmerman, Richard A Bonneau
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17 (7) (2020)
Mahmudul Hasan, Hamed Khakzad, Lotta J Happonen, Anders P Sundin, Johan Unge, Uwe Mueller, Johan Malmstöm, Gunilla Westergren-Thorsson, Lars Malmström, Ulf Ellervik, Anders Malmström, Emil Tykesson
The structure of human dermatan sulfate epimerase 1 emphasizes the importance of C5-epimerization of glucuronic acid in higher organisms. Chemical science 12 (5) (2020)
Lotta Happonen, Simon Hauri, Gabriel Svensson Birkedal, Christofer A Q Karlsson, Therese de Neergaard, Hamed Khakzad, Pontus Nordenfelt, Mats Wikström, Magdalena Wisniewska, Lars Björck, Lars Malmström, Johan Malmstöm
A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies. Nature communications 10 (1) (2019)
Simon Hauri, Hamed Khakzad, Lotta Happonen, Johan Teleman, Johan Malmstöm, Lars Malmström
Rapid determination of quaternary protein structures in complex biological samples. Nature communications 10 (1) (2019)
Deena M Leslie Pedrioli, Mario Leutert, Vera Bilan, Kathrin Nowak, Kapila Gunasekera, Elena Ferrari, Ralph Imhof, Lars Malmström, Michael O Hottiger
Comprehensive ADP-ribosylome analysis identifies tyrosine as an ADP-ribose acceptor site. EMBO reports 19 (8) (2018)
Vladimír Ulman, Martin Maška, Klas E G Magnusson, Olaf Ronneberger, Carsten Haubold, Nathalie Harder, Pavel Matula, Petr Matula, David Svoboda, Miroslav Radojevic, Ihor Smal, Karl Rohr, Joakim Jaldén, Helen M Blau, Oleh Dzyubachyk, Boudewijn Lelieveldt, Pengdong Xiao, Yuexiang Li, Siu-Yeung Cho, Alexandre C Dufour, Jean-Christophe Olivo-Marin, Constantino C Reyes-Aldasoro, Jose A Solis-Lemus, Robert Bensch, Thomas Brox, Johannes Stegmaier, Ralf Mikut, Steffen Wolf, Fred A Hamprecht, Tiago Esteves, Pedro Quelhas, Ömer Demirel, Lars Malmström, Florian Jug, Pavel Tomancak, Erik Meijering, Arrate Munoz Barrutia, Michal Kozubek, Carlos Ortiz de Solórzano
An objective comparison of cell-tracking algorithms. Nature methods 14 (12) (2017)
George A Rosenberger, Yansheng Liu, Hannes L Röst, Christina Ludwig, Alfonso A Buil Demur, Ariel Bensimon, Martin Soste, Tim D Spector, Emmanouil T Dermitzakis, Ben C Collins, Lars Malmström, Ruedi Aebersold
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nature biotechnology 35 (8) (2017)
Hannes L Röst, Yansheng Liu, Giuseppe D'Agostino, Matteo Zanella, Pedro Navarro, George A Rosenberger, Ben C Collins, Ludovic Gillet, Giuseppe Testa, Lars Malmström, Ruedi Aebersold
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics. Nature methods 13 (9) (2016)
Hannes L Röst, George A Rosenberger, Pedro Navarro, Ludovic Gillet, Saša M Miladinović, Olga T Schubert, Witold Wolski, Ben C Collins, Johan Malmström, Lars Malmström, Ruedi Aebersold
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data. Nature biotechnology 32 (3) (2015)
Thomas Walzthoeni, Lukasz A Joachimiak, George A Rosenberger, Hannes L Röst, Lars Malmström, Alexander Leitner, Judith Frydman, Ruedi Aebersold
xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry. Nature methods 12 (12) (2015)