Arup Mondal

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 22

Top Topics

Molecular Dynamics Simulations

Capillary Electrophoresis

Top Venues

Analytical chemistry

The journal of physical chemistry. A

Angewandte Chemie (International ed. in English)

Wiley interdisciplinary reviews. Computational molecular science

This page only lists publications with an associated author ORCID identifier.

Publications

Arup Mondal, Bhumika Singh, Roland H Felkner, Anna De Falco, Gvt Swapna, Gaetano T Montelione, Monica J Roth, Alberto Perez
A Computational Pipeline for Accurate Prioritization of Protein-Protein Binding Candidates in High-Throughput Protein Libraries. Angewandte Chemie (International ed. in English) (2024)
Lexin Chen, Arup Mondal, Alberto Perez, Ramón Alain Miranda-Quintana
Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices. Journal of chemical theory and computation 20 (14) (2024)
Arup Mondal, Bhumika Singh, Roland H Felkner, Anna De Falco, Gvt Swapna, Gaetano T Montelione, Monica J Roth, Alberto Perez
A Computational Pipeline for Accurate Prioritization of Protein-Protein Binding Candidates in High-Throughput Protein Libraries. Angewandte Chemie (International ed. in English) 63 (24) (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry 96 (21) (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry 96 (21) (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry 96 (21) (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry (2024)
Arup Mondal, Bhumika Singh, Roland H Felkner, Anna De Falco, Gvt Swapna, Gaetano T Montelione, Monica J Roth, Alberto Perez
A Computational Pipeline for Accurate Prioritization of Protein-Protein Binding Candidates in High-Throughput Protein Libraries. Angewandte Chemie (International ed. in English) 63 (24) (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry 96 (21) (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry 96 (21) (2024)
Lexin Chen, Arup Mondal, Alberto Perez, Ramón Alain Miranda-Quintana
Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices. Journal of chemical theory and computation (2024)
Woo-Young Kang, Arup Mondal, Julia R Bonney, Alberto Perez, Boone M Prentice
Structural Elucidation of Ubiquitin via Gas-Phase Ion/Ion Cross-Linking Reactions Using Sodium-Cationized Reagents Coupled with Infrared Multiphoton Dissociation. Analytical chemistry (2024)
Liwei Chang, Arup Mondal, Justin L MacCallum, Alberto Perez
CryoFold 2.0: Cryo-EM Structure Determination with MELD. The journal of physical chemistry. A (2023)
Liwei Chang, Arup Mondal, Justin L MacCallum, Alberto Perez
CryoFold 2.0: Cryo-EM Structure Determination with MELD. The journal of physical chemistry. A (2023)
Liwei Chang, Arup Mondal, Justin L MacCallum, Alberto Perez
CryoFold 2.0: Cryo-EM Structure Determination with MELD. The journal of physical chemistry. A 127 (17) (2023)
Liwei Chang, Arup Mondal, Justin L MacCallum, Alberto Perez
CryoFold 2.0: Cryo-EM Structure Determination with MELD. The journal of physical chemistry. A 127 (17) (2023)
Liwei Chang, Arup Mondal, Bhumika Singh, Yisel Martínez-Noa, Alberto Perez
Revolutionizing Peptide-Based Drug Discovery: Advances in the Post-AlphaFold Era. Wiley interdisciplinary reviews. Computational molecular science 14 (1) (2023)
Liwei Chang, Arup Mondal, Justin L MacCallum, Alberto Perez
CryoFold 2.0: Cryo-EM Structure Determination with MELD. The journal of physical chemistry. A 127 (17) (2023)
Arup Mondal, G V T Swapna, Maria M Lopez, Laura Klang, Jingzhou Hao, LiChung Ma, Monica J Roth, Gaetano T Montelione, Alberto Perez
Structure Determination of Challenging Protein-Peptide Complexes Combining NMR Chemical Shift Data and Molecular Dynamics Simulations. Journal of chemical information and modeling (2023)
Liwei Chang, Arup Mondal, Justin L MacCallum, Alberto Perez
CryoFold 2.0: Cryo-EM Structure Determination with MELD. The journal of physical chemistry. A (2023)
Liwei Chang, Arup Mondal, Bhumika Singh, Yisel Martínez-Noa, Alberto Perez
Revolutionizing Peptide-Based Drug Discovery: Advances in the Post-AlphaFold Era. Wiley interdisciplinary reviews. Computational molecular science 14 (1) (2023)
Arup Mondal, Liwei Chang, Alberto Perez
Modelling peptide-protein complexes: docking, simulations and machine learning. QRB discovery 3 (2022)