Ramón Alain Miranda-Quintana

ResearcherID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 48

Top Venues

bioRxiv : the preprint server for biology

Digital discovery

The journal of physical chemistry. B

The Journal of chemical physics

University of Florida

University of Havana (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Florida Feb 08 2020

United States

Assistant professor :: Chemistry

York University

Canada

Postdoc (York Science Fellow) :: Chemistry

McMaster University

Canada

Visiting researcher :: Chemistry & Chemical Biology

University of Havana

Cuba

Instructor :: Chemical Physics

Education History

University of Havana

Cuba

PHD :: Chemical Physics

Higher Institute of Technologies anf Applied Sciences

Cuba

BSC :: Radiochemistry

Publications

Lexin Chen, Arup Mondal, Alberto Perez, Ramón Alain Miranda-Quintana
Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices. Journal of chemical theory and computation 20 (14) (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: an improved clustering algorithm for Molecular Dynamics simulations. bioRxiv : the preprint server for biology (2024)
Kenneth López Pérez, Vicky Jung, Lexin Chen, Kate Huddleston, Ramón Alain Miranda-Quintana
Efficient clustering of large molecular libraries. bioRxiv : the preprint server for biology (2024)
Kenneth López Pérez, Vicky Jung, Lexin Chen, Kate Huddleston, Ramón Alain Miranda-Quintana
Efficient clustering of large molecular libraries. bioRxiv : the preprint server for biology (2024)
Nicholas R Ellin, Yingchan Guo, Ramón Alain Miranda-Quintana, Boone M Prentice
Extended similarity methods for efficient data mining in imaging mass spectrometry. Digital discovery 3 (4) (2024)
Ramón Alain Miranda-Quintana, Taewon D Kim, Rugwed A Lokhande, M Richer, Gabriela Sánchez-Díaz, Pratiksha B Gaikwad, Paul W Ayers
Flexible Ansatz for N -Body Perturbation Theory. The journal of physical chemistry. A (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: An Improved Clustering Algorithm for Molecular Dynamics Simulations. Journal of chemical theory and computation 20 (13) (2024)
Ramón Alain Miranda-Quintana, Taewon D Kim, Rugwed A Lokhande, M Richer, Gabriela Sánchez-Díaz, Pratiksha B Gaikwad, Paul W Ayers
Flexible Ansatz for N -Body Perturbation Theory. The journal of physical chemistry. A 128 (17) (2024)
Kenneth López-Pérez, Taewon D Kim, Ramón Alain Miranda-Quintana
iSIM: instant similarity. Digital discovery 3 (6) (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: an improved clustering algorithm for Molecular Dynamics simulations. bioRxiv : the preprint server for biology (2024)
Nicholas R Ellin, Yingchan Guo, Ramón Alain Miranda-Quintana, Boone M Prentice
Extended similarity methods for efficient data mining in imaging mass spectrometry. Digital discovery 3 (4) (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: an improved clustering algorithm for Molecular Dynamics simulations. bioRxiv : the preprint server for biology (2024)
Nicholas R Ellin, Yingchan Guo, Ramón Alain Miranda-Quintana, Boone M Prentice
Extended similarity methods for efficient data mining in imaging mass spectrometry. Digital discovery 3 (4) (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: An Improved Clustering Algorithm for Molecular Dynamics Simulations. Journal of chemical theory and computation (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: an improved clustering algorithm for Molecular Dynamics simulations. bioRxiv : the preprint server for biology (2024)
Nicholas R Ellin, Yingchan Guo, Ramón Alain Miranda-Quintana, Boone M Prentice
Extended similarity methods for efficient data mining in imaging mass spectrometry. Digital discovery 3 (4) (2024)
Kenneth López-Pérez, Taewon D Kim, Ramón Alain Miranda-Quintana
iSIM: instant similarity. Digital discovery 3 (6) (2024)
Lexin Chen, Arup Mondal, Alberto Perez, Ramón Alain Miranda-Quintana
Protein Retrieval via Integrative Molecular Ensembles (PRIME) through Extended Similarity Indices. Journal of chemical theory and computation (2024)
Lexin Chen, Daniel R Roe, Matthew Kochert, Carlos L Simmerling, Ramón Alain Miranda-Quintana
k-Means NANI: An Improved Clustering Algorithm for Molecular Dynamics Simulations. Journal of chemical theory and computation (2024)
Nicholas R Ellin, Yingchan Guo, Ramón Alain Miranda-Quintana, Boone M Prentice
Extended similarity methods for efficient data mining in imaging mass spectrometry. Digital discovery 3 (4) (2024)
Nicholas R Ellin, Ramón Alain Miranda-Quintana, Boone M Prentice
Extended Similarity Methods for Efficient Data Mining in Imaging Mass Spectrometry. bioRxiv : the preprint server for biology (2023)
Kenneth López-Pérez, Edgar López-López, José Luis Medina-Franco, Ramón Alain Miranda-Quintana
Sampling and Mapping Chemical Space with Extended Similarity Indices. Molecules (Basel, Switzerland) 28 (17) (2023)
Ramón Alain Miranda-Quintana, Alberto Vela, Frank de Proft, Marco Martínez González, José L Gázquez
Can we predict ambident regioselectivity using the chemical hardness? Physical chemistry chemical physics : PCCP (2023)
Ramón Alain Miranda-Quintana, Alberto Vela, Frank de Proft, Marco Martínez González, José L Gázquez
Can we predict ambident regioselectivity using the chemical hardness? Physical chemistry chemical physics : PCCP 25 (19) (2023)
Ramón Alain Miranda-Quintana, Lexin Chen, Vincent Stuart James Craig, Jens Smiatek
Quantitative Solvation Energies from Gas-Phase Calculations: First-Principles Charge Transfer and Perturbation Approaches. The journal of physical chemistry. B 127 (11) (2023)
Ramón Alain Miranda-Quintana, Alberto Vela, Frank de Proft, Marco Martínez González, José L Gázquez
Can we predict ambident regioselectivity using the chemical hardness? Physical chemistry chemical physics : PCCP 25 (19) (2023)
Ramón Alain Miranda-Quintana, Lexin Chen, Vincent Stuart James Craig, Jens Smiatek
Quantitative Solvation Energies from Gas-Phase Calculations: First-Principles Charge Transfer and Perturbation Approaches. The journal of physical chemistry. B (2023)
Anita Rácz, Levente M Mihalovits, Dávid Bajusz, Károly Héberger, Ramón Alain Miranda-Quintana
Molecular Dynamics Simulations and Diversity Selection by Extended Continuous Similarity Indices. Journal of chemical information and modeling 62 (14) (2022)
Anita Rácz, Timothy B Dunn, Dávid Bajusz, Taewon D Kim, Ramón Alain Miranda-Quintana, Károly Héberger
Extended continuous similarity indices: theory and application for QSAR descriptor selection. Journal of computer-aided molecular design 36 (3) (2022)
Taewon D Kim, M Richer, Gabriela Sánchez-Díaz, Ramón Alain Miranda-Quintana, Toon Verstraelen, Farnaz Heidar-Zadeh, Paul W Ayers
Fanpy: A python library for prototyping multideterminant methods in ab initio quantum chemistry. Journal of computational chemistry (2022)
I-Ting Ho, Milena Matysik, Liliana Montano Herrera, Jiyoung Yang, Ralph Joachim Guderlei, Michael Laussegger, Bernhard Schrantz, Regine Hammer, Ramón Alain Miranda-Quintana, Jens Smiatek
Combination of explainable machine learning and conceptual density functional theory: applications for the study of key solvation mechanisms. Physical chemistry chemical physics : PCCP 24 (46) (2022)
Ramón Alain Miranda-Quintana, Jens Smiatek
Application of Fundamental Chemical Principles for Solvation Effects: A Unified Perspective for Interaction Patterns in Solution. The journal of physical chemistry. B 126 (43) (2022)
Anita Rácz, Dávid Bajusz, Ramón Alain Miranda-Quintana, Károly Héberger
Machine learning models for classification tasks related to drug safety. Molecular diversity 25 (3) (2021)
Ramón Alain Miranda-Quintana, Jens Smiatek
Electronic Properties of Protein Destabilizers and Stabilizers: Implications for Preferential Binding and Exclusion Mechanisms. The journal of physical chemistry. B 125 (43) (2021)
Ramón Alain Miranda-Quintana, Dávid Bajusz, Anita Rácz, Károly Héberger
Differential Consistency Analysis: Which Similarity Measures can be Applied in Drug Discovery? Molecular informatics 40 (7) (2021)
E Alexis Flores-Padilla, K Eurídice Juárez-Mercado, José J Naveja, Taewon D Kim, Ramón Alain Miranda-Quintana, José Luis Medina-Franco
Chemoinformatic Characterization of Synthetic Screening Libraries Focused on Epigenetic Targets. Molecular informatics 41 (6) (2021)
Ramón Alain Miranda-Quintana, Jens Smiatek
Specific Ion Effects in Different Media: Current Status and Future Challenges. The journal of physical chemistry. B 125 (51) (2021)
Ramón Alain Miranda-Quintana, Anita Rácz, Dávid Bajusz, Károly Héberger
Extended similarity indices: the benefits of comparing more than two objects simultaneously. Part 2: speed, consistency, diversity selection. Journal of cheminformatics 13 (1) (2021)
Ramón Alain Miranda-Quintana, Dávid Bajusz, Anita Rácz, Károly Héberger
Extended similarity indices: the benefits of comparing more than two objects simultaneously. Part 1: Theory and characteristics†. Journal of cheminformatics 13 (1) (2021)
Timothy B Dunn, Gustavo de Miranda Seabra, Taewon David Kim, K Eurídice Juárez-Mercado, Chenglong Li, José L Medina-Franco, Ramón Alain Miranda-Quintana
Diversity and Chemical Library Networks of Large Data Sets. Journal of chemical information and modeling (2021)
Liwei Chang, Alberto Perez, Ramón Alain Miranda-Quintana
Improving the analysis of biological ensembles through extended similarity measures. Physical chemistry chemical physics : PCCP 24 (1) (2021)
Ramón Alain Miranda-Quintana, Paul W Ayers
Note: Maximum hardness and minimum electrophilicity principles. The Journal of chemical physics 148 (19) (2018)
Goedele Roos, Ramón Alain Miranda-Quintana, Marco Martínez González
How Biochemical Environments Fine-Tune a Redox Process: From Theoretical Models to Practical Applications. The journal of physical chemistry. B 122 (34) (2018)
Ramón Alain Miranda-Quintana, Farnaz Heidar-Zadeh, Paul W Ayers
Elementary Derivation of the "|Δμ| Big Is Good" Rule. The journal of physical chemistry letters 9 (15) (2018)
Ramón Alain Miranda-Quintana, Marco Franco-Pérez, José L Gázquez, Paul W Ayers, Alberto Vela
Chemical hardness: Temperature dependent definitions and reactivity principles. The Journal of chemical physics 149 (12) (2018)
Ramón Alain Miranda-Quintana
Thermodynamic electrophilicity. The Journal of chemical physics 146 (21) (2018)
Ramón Alain Miranda-Quintana, Pratim Kumar Chattaraj, Paul W Ayers
Finite temperature grand canonical ensemble study of the minimum electrophilicity principle. The Journal of chemical physics 147 (12) (2018)
Ramón Alain Miranda-Quintana
Note: The minimum electrophilicity and the hard/soft acid/base principles. The Journal of chemical physics 146 (4) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ramón Alain Miranda-Quintana