B Franklin Pugh

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 10

Top Topics

Saccharomyces Cerevisiae

High Throughput Sequencing

Circulating Tumor Cells

Top Venues

Genome research

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Olivia Lang, Divyanshi Srivastava, B Franklin Pugh, William K M Lai
GenoPipe: identifying the genotype of origin within (epi)genomic datasets. bioRxiv : the preprint server for biology (2023)
Olivia W Lang, Divyanshi Srivastava, B Franklin Pugh, William K M Lai
GenoPipe: identifying the genotype of origin within (epi)genomic datasets. Nucleic acids research (2023)
Danying Shao, Gretta D Kellogg, Ali Nematbakhsh, Prashant K Kuntala, Shaun Mahony, B Franklin Pugh, William K M Lai
PEGR: a flexible management platform for reproducible epigenomic and genomic research. Genome biology 23 (1) (2022)
Chitvan Mittal, Olivia Lang, William K M Lai, B Franklin Pugh
An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters. Genes & development 36 (17-18) (2022)
Jordan John, Javaid Jabbar, Nitika Badjatia, Matthew J Rossi, William K M Lai, B Franklin Pugh
Genome-wide promoter assembly in E. coli measured at single-base resolution. Genome research 32 (5) (2022)
Qi Sun, Ali Nematbakhsh, Prashant K Kuntala, Gretta D Kellogg, B Franklin Pugh, William K M Lai
STENCIL: A web templating engine for visualizing and sharing life science datasets. PLoS computational biology 18 (2) (2022)
B Franklin Pugh
Protein architecture of the yeast genome. Nature (2021)
William K M Lai, Luca Mariani, Gerson Rothschild, Edwin R Smith, Bryan J Venters, Thomas R Blanda, Prashant K Kuntala, Kylie Bocklund, Joshua Mairose, Sarah N Dweikat, Katelyn Mistretta, Matthew J Rossi, Daniela James, James T Anderson, Sabrina K Phanor, Wanwei Zhang, Zibo Zhao, Avani P Shah, Katherine Novitzky, Eileen McAnarney, Michael-C Keogh, Ali Shilatifard, Uttiya Basu, Martha L Bulyk, B Franklin Pugh
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells. Genome research 31 (9) (2021)
Matthew J Rossi, Prashant K Kuntala, William K M Lai, Naomi Yamada, Nitika Badjatia, Chitvan Mittal, Guray Kuzu, Kylie Bocklund, Nina P Farrell, Thomas R Blanda, Joshua D Mairose, Ann V Basting, Katelyn S Mistretta, David J Rocco, Emily S Perkinson, Gretta D Kellogg, Shaun Mahony, B Franklin Pugh
A high-resolution protein architecture of the budding yeast genome. Nature 592 (7853) (2021)
Tingting Zhao, Irina O Vvedenskaya, William Km Lai, Shrabani Basu, B Franklin Pugh, Bryce E Nickels, Craig D Kaplan
Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae. eLife 10 (2021)