Craig D Kaplan (Craig Kaplan)

Scopus Author ID Pitt ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 43

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature structural & molecular biology

Nucleic acids research

bioRxiv : the preprint server for biology

Texas A&M University

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Texas A&M University Sep 01 2009

United States

Assistant Professor :: Biochemistry and Biophysics

Stanford University School of Medicine Aug 21 2004 - Aug 31 2009

United States

Postdoctoral Fellow :: Structural Biology

Huntsman Cancer Institute Jan 01 2003 - Aug 20 2004

United States

Postdoctoral Fellow :: Human Genetics

University of Utah School of Medicine May 01 1995 - Aug 31 1996

United States

Lab technician :: Human Genetics

University of Utah School of Medicine Jun 01 1994 - Aug 31 1994

United States

Lab technician :: Human Genetics

Education History

Harvard University Sep 01 1996 - Dec 01 2002

United States

PHD :: Harvard Medical School, Department of Genetics

University of Michigan Sep 01 1991 - Apr 28 1995

United States

BSC :: Biology, Classical Studies

Publications

Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Michael F Feig, Jihnu Song, Artem Lyubimov, Aina E Cohen, Craig D Kaplan, Guillermo Calero
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Michael F Feig, Jihnu Song, Artem Lyubimov, Aina E Cohen, Craig D Kaplan, Guillermo Calero
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Chenxi Qiu, Payal Arora, Indranil Malik, Amber J LaPeruta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan
Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro. Nucleic acids research (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Bingbing Duan, Chenxi Qiu, Steve W Lockless, Sing-Hoi Sze, Craig D Kaplan
Higher-order epistasis within Pol II trigger loop haplotypes. bioRxiv : the preprint server for biology (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology (2024)
Chun Yang, Pratik Basnet, Samah Sharmin, Hui Shen, Craig D Kaplan, Kenji Murakami
Transcription start site scanning requires the fungi-specific hydrophobic loop of Tfb3. Nucleic acids research (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Chenxi Qiu, Payal Arora, Indranil Malik, Amber J LaPeruta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan
Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro. Nucleic acids research 52 (5) (2024)
Chenxi Qiu, Payal Arora, Indranil Malik, Amber J LaPeruta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan
Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro. Nucleic acids research (2024)
Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Michael F Feig, Jihnu Song, Artem Lyubimov, Aina E Cohen, Craig D Kaplan, Guillermo Calero
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Chenxi Qiu, Payal Arora, Indranil Malik, Amber J LaPeruta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan
Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro. Nucleic acids research 52 (5) (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Bingbing Duan, Chenxi Qiu, Steve W Lockless, Sing-Hoi Sze, Craig D Kaplan
Higher-order epistasis within Pol II trigger loop haplotypes. bioRxiv : the preprint server for biology (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Chenxi Qiu, Payal Arora, Indranil Malik, Amber J LaPeruta, Emily M Pavlovic, Scott Ugochukwu, Mandar Naik, Craig D Kaplan
Thiolutin has complex effects in vivo but is a direct inhibitor of RNA polymerase II in vitro. Nucleic acids research 52 (5) (2024)
Yunye Zhu, Irina O Vvedenskaya, Sing-Hoi Sze, Bryce E Nickels, Craig D Kaplan
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels. Nature structural & molecular biology 31 (1) (2024)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Leonid Kruglyak, Andreas Beyer, Joshua S Bloom, Jan Großbach, Tami D Lieberman, Christopher P Mancuso, Matthew S Rich, Gavin Sherlock, Craig D Kaplan
Insufficient evidence for non-neutrality of synonymous mutations. Nature 616 (7957) (2023)
Bingbing Duan, Chenxi Qiu, Sing-Hoi Sze, Craig D Kaplan
Widespread epistasis shapes RNA Polymerase II active site function and evolution. bioRxiv : the preprint server for biology (2023)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bingbing Duan, Chenxi Qiu, Sing-Hoi Sze, Craig D Kaplan
Widespread epistasis shapes RNA Polymerase II active site function and evolution. bioRxiv : the preprint server for biology (2023)
Bingbing Duan, Chenxi Qiu, Sing-Hoi Sze, Craig D Kaplan
Widespread epistasis shapes RNA Polymerase II active site function and evolution. bioRxiv : the preprint server for biology (2023)
Claire Chung, Bert M Verheijen, Zoe Navapanich, Eric G McGann, Sarah Shemtov, Guan-Ju Lai, Payal Arora, Atif Towheed, Suraiya Haroon, Agnes Holczbauer, Sharon Chang, Zarko Manojlovic, Stephen Simpson, W Kelley Thomas, Craig D Kaplan, Peter van Hasselt, H Th Marc Timmers, Dorothy Erie, Chia-Lin Chen, Jean-Franćois Gout, Marc Vermulst
Evolutionary conservation of the fidelity of transcription. Nature communications 14 (1) (2023)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Claire Chung, Bert M Verheijen, Zoe Navapanich, Eric G McGann, Sarah Shemtov, Guan-Ju Lai, Payal Arora, Atif Towheed, Suraiya Haroon, Agnes Holczbauer, Sharon Chang, Zarko Manojlovic, Stephen Simpson, W Kelley Thomas, Craig D Kaplan, Peter van Hasselt, H Th Marc Timmers, Dorothy Erie, Chia-Lin Chen, Jean-Franćois Gout, Marc Vermulst
Evolutionary conservation of the fidelity of transcription. Nature communications 14 (1) (2023)
Claire Chung, Bert M Verheijen, Zoe Navapanich, Eric G McGann, Sarah Shemtov, Guan-Ju Lai, Payal Arora, Atif Towheed, Suraiya Haroon, Agnes Holczbauer, Sharon Chang, Zarko Manojlovic, Stephen Simpson, W Kelley Thomas, Craig D Kaplan, Peter van Hasselt, H Th Marc Timmers, Dorothy Erie, Chia-Lin Chen, Jean-Franćois Gout, Marc Vermulst
Evolutionary conservation of the fidelity of transcription. Nature communications 14 (1) (2023)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Craig D Kaplan
Mediator and Pol II go to eleven (CTD repeats). Proceedings of the National Academy of Sciences of the United States of America 120 (18) (2023)
Bercem Dutagaci, Bingbing Duan, Chenxi Qiu, Craig D Kaplan, Michael F Feig
Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning. PLoS computational biology 19 (3) (2023)
Trevor Van Eeuwen, Yoonjung Shim, Hee Jong Kim, Tingting Zhao, Shrabani Basu, Benjamin A Garcia, Craig D Kaplan, Jung-Hyun Min, Kenji Murakami
Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair. Nature communications 12 (1) (2021)
Tingting Zhao, Irina O Vvedenskaya, William Km Lai, Shrabani Basu, B Franklin Pugh, Bryce E Nickels, Craig D Kaplan
Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae. eLife 10 (2021)
Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik, Alex M Visbisky, Scott L Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William K M Lai, Richard P Metz, Charles D Johnson, Sing-Hoi Sze, B Franklin Pugh, Bryce E Nickels, Craig D Kaplan
Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae. Genome biology 21 (1) (2020)
Sarah J Hainer, Craig D Kaplan
Specialized RSC: Substrate Specificities for a Conserved Chromatin Remodeler. BioEssays : news and reviews in molecular, cellular and developmental biology 42 (7) (2020)
Nairita Maitra, Jayamani Anandhakumar, Heidi M Blank, Craig D Kaplan, Michael Polymenis
Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae. G3 (Bethesda, Md.) 9 (1) (2019)
Zhijie Chen, Ronen Gabizon, Aidan I Brown, Antony Lee, Aixin Song, César Díaz-Celis, Craig D Kaplan, Elena F Koslover, Tingting Yao, Carlos J Bustamante
High-resolution and high-accuracy topographic and transcriptional maps of the nucleosome barrier. eLife 8 (2019)
Craig D Kaplan
Pairs of promoter pairs in a web of transcription. Nature genetics 48 (9) (2017)
Ping Cui, Huiyan Jin, Manjula Ramya Vutukuru, Craig D Kaplan
Relationships Between RNA Polymerase II Activity and Spt Elongation Factors to Spt- Phenotype and Growth in Saccharomyces cerevisiae. G3 (Bethesda, Md.) 6 (8) (2016)
Huiyan Jin, Craig D Kaplan
Relationships of RNA polymerase II genetic interactors to transcription start site usage defects and growth in Saccharomyces cerevisiae. G3 (Bethesda, Md.) 5 (1) (2014)

Craig D Kaplan.css-eqlu8i{font-size:small;padding-left:4px;} (Craig Kaplan)

Publication Activity (10 Years)

Top Topics

Top Venues

Craig D Kaplan (Craig Kaplan)