B Jesse Shapiro (Jesse Shapiro, B J Shapiro)

Scopus Author ID ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Topics

Escherichia Coli

Genetic Diversity

Arabidopsis Thaliana

Top Venues

Microbiology spectrum

Nature ecology & evolution

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Mira El Chaar, Yaralynn Khoury, Gavin M Douglas, Samir El Kazzi, Tamima Jisr, Shatha Soussi, Georgi Merhi, Rima A Moghnieh, B Jesse Shapiro
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients. Microbiology spectrum (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful I Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Vibrio cholerae O1 experiences mild bottlenecks through the gastrointestinal tract in some but not all cholera patients. Microbiology spectrum (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful Islam Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Diversity of Vibrio cholerae O1 through the human gastrointestinal tract during cholera. bioRxiv : the preprint server for biology (2024)
Mira El Chaar, Yaralynn Khoury, Gavin M Douglas, Samir El Kazzi, Tamima Jisr, Shatha Soussi, Georgi Merhi, Rima A Moghnieh, B Jesse Shapiro
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients. Microbiology spectrum 12 (2) (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful Islam Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Diversity of Vibrio cholerae O1 through the human gastrointestinal tract during cholera. bioRxiv : the preprint server for biology (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful I Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Vibrio cholerae O1 experiences mild bottlenecks through the gastrointestinal tract in some but not all cholera patients. Microbiology spectrum 12 (8) (2024)
Gavin M Douglas, B Jesse Shapiro
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes. Nature ecology & evolution 8 (2) (2024)
Gavin M Douglas, B Jesse Shapiro
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes. Nature ecology & evolution (2024)
Gavin M Douglas, B Jesse Shapiro
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes. Nature ecology & evolution 8 (2) (2024)
Naïma Madi, Emilee T Cato, Md Abu Sayeed, Ashton Creasy-Marrazzo, Aline Cuénod, Kamrul Islam, Md Imam Ul Khabir, Taufiqur Rahman Bhuiyan, Yasmin A Begum, Emma Freeman, Anirudh Vustepalli, Lindsey Brinkley, Manasi Kamat, Laura S Bailey, Kari B Basso, Firdausi Qadri, Ashraful Islam Khan, B Jesse Shapiro, Eric J Nelson
Phage predation, disease severity, and pathogen genetic diversity in cholera patients. Science (New York, N.Y.) 384 (6693) (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful Islam Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Diversity of Vibrio cholerae O1 through the human gastrointestinal tract during cholera. bioRxiv : the preprint server for biology (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful Islam Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Diversity of Vibrio cholerae O1 through the human gastrointestinal tract during cholera. bioRxiv : the preprint server for biology (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful I Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Vibrio cholerae O1 experiences mild bottlenecks through the gastrointestinal tract in some but not all cholera patients. Microbiology spectrum (2024)
Mira El Chaar, Yaralynn Khoury, Gavin M Douglas, Samir El Kazzi, Tamima Jisr, Shatha Soussi, Georgi Merhi, Rima A Moghnieh, B Jesse Shapiro
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients. Microbiology spectrum 12 (2) (2024)
Naïma Madi, Emilee T Cato, Md Abu Sayeed, Ashton Creasy-Marrazzo, Aline Cuénod, Kamrul Islam, Md Imam Ul Khabir, Taufiqur Rahman Bhuiyan, Yasmin A Begum, Emma Freeman, Anirudh Vustepalli, Lindsey Brinkley, Manasi Kamat, Laura S Bailey, Kari B Basso, Firdausi Qadri, Ashraful Islam Khan, B Jesse Shapiro, Eric J Nelson
Phage predation, disease severity, and pathogen genetic diversity in cholera patients. Science (New York, N.Y.) 384 (6693) (2024)
Mira El Chaar, Yaralynn Khoury, Gavin M Douglas, Samir El Kazzi, Tamima Jisr, Shatha Soussi, Georgi Merhi, Rima A Moghnieh, B Jesse Shapiro
Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in critical care patients. Microbiology spectrum 12 (2) (2024)
Gavin M Douglas, B Jesse Shapiro
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes. Nature ecology & evolution 8 (2) (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful I Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Vibrio cholerae O1 experiences mild bottlenecks through the gastrointestinal tract in some but not all cholera patients. Microbiology spectrum (2024)
Gavin M Douglas, B Jesse Shapiro
Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes. Nature ecology & evolution 8 (2) (2024)
Patrick Lypaczewski, Denise Chac, Chelsea N Dunmire, Kristine M Tandoc, Fahima Chowdhury, Ashraful Islam Khan, Taufiqur Rahman Bhuiyan, Jason B Harris, Regina C LaRocque, Stephen B Calderwood, Edward Thomas Ryan, Firdausi Qadri, B Jesse Shapiro, Ana A Weil
Diversity of Vibrio cholerae O1 through the human gastrointestinal tract during cholera. bioRxiv : the preprint server for biology (2024)
Naïma Jesse Madi, Daisy Chen, Richard Wolff, B Jesse Shapiro, Nandita R Garud
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. eLife 12 (2023)
Naïma Madi, Daisy Chen, Richard Wolff, B Jesse Shapiro, Nandita R Garud
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. eLife 12 (2023)
N Madi, E T Cato, Md Abu Sayeed, K Islam, Md I Ui Khabir, Md T R Bhuiyan, Y Begum, M M Rashid, A Creasy-Marrazzo, Lindsey Brinkley, M Kamat, Aline Cuénod, L S Bailey, Kari B Basso, Firdausi Qadri, Ashraful Islam Khan, B Jesse Shapiro, E J Nelson
Phage predation and antibiotic exposure are inversely associated with disease severity and shape pathogen genetic diversity in cholera patients. bioRxiv : the preprint server for biology (2023)
Naïma Madi, Daisy Chen, Richard Wolff, B Jesse Shapiro, Nandita R Garud
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. eLife 12 (2023)
Naïma Madi, Daisy Chen, Richard Wolff, B Jesse Shapiro, Nandita R Garud
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. eLife 12 (2023)
Naïma Madi, Daisy Chen, Richard Wolff, B Jesse Shapiro, Nandita R Garud
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. eLife 12 (2023)
Gavin M Douglas, Sunu Kim, Morgan G I Langille, B Jesse Shapiro
Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics (Oxford, England) 39 (1) (2023)
Sana Naderi, Peter E Chen, Carmen Lia Murall, Raphael Poujol, Susanne Kraemer, Bradley S Pickering, Selena M Sagan, B Jesse Shapiro
Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysis. eLife 12 (2023)
Gavin M Douglas, Sunu Kim, Morgan G I Langille, B Jesse Shapiro
Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics (Oxford, England) 39 (1) (2023)
Naïma Madi, Daisy Chen, Richard Wolff, B Jesse Shapiro, Nandita R Garud
Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome. eLife 12 (2023)
Gavin M Douglas, Sunu Kim, Morgan G I Langille, B Jesse Shapiro
Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics (Oxford, England) 39 (1) (2023)
Gavin M Douglas, B Jesse Shapiro
Genic Selection Within Prokaryotic Pangenomes. Genome biology and evolution 13 (11) (2022)
Arnaud N'Guessan, Ilana Lauren Brito, Adrian W R Serohijos, B Jesse Shapiro
Mobile Gene Sequence Evolution within Individual Human Gut Microbiomes Is Better Explained by Gene-Specific Than Host-Specific Selective Pressures. Genome biology and evolution 13 (8) (2022)
Jean-Baptiste Leducq, Émilie Seyer-Lamontagne, Domitille Condrain-Morel, Geneviève Bourret, David Sneddon, James A Foster, Christopher J Marx, Jack M Sullivan, B Jesse Shapiro, Steven W Kembel
Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere Methylobacterium Diversity. mBio (2022)
Naíla Barbosa da Costa, Marie-Pier Hébert, Vincent Fugère, Yves Terrat, Gregor F Fussmann, Andrew Gonzalez, B Jesse Shapiro
A Glyphosate-Based Herbicide Cross-Selects for Antibiotic Resistance Genes in Bacterioplankton Communities. mSystems 7 (2) (2022)
Jean-Baptiste Leducq, David Sneddon, Malia Santos, Domitille Condrain-Morel, Geneviève Bourret, N Cecilia Martinez-Gomez, Jessica A Lee, James A Foster, Sergey Stolyar, B Jesse Shapiro, Steven W Kembel, Jack M Sullivan, Christopher J Marx
Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity. Genome biology and evolution 14 (8) (2022)
Carmen Lía Murall, Eric Fournier, Jose Hector Galvez, Arnaud N'Guessan, Sarah J Reiling, Pierre-Olivier Quirion, Sana Naderi, Anne-Marie Roy, Shu-Huang Chen, Paul Stretenowich, Mathieu Bourgey, David Bujold, Romain Gregoire, Pierre Lepage, Janick St-Cyr, Patrick Willet, Réjean Dion, Hugues Charest, Mark Lathrop, Michel Roger, Guillaume Bourque, Jiannis Ragoussis, B Jesse Shapiro, Sandrine Moreira
A small number of early introductions seeded widespread transmission of SARS-CoV-2 in Québec, Canada. Genome medicine 13 (1) (2021)
Naíla Barbosa da Costa, Vincent Fugère, Marie-Pier Hébert, Charles C Y Xu, Rowan D H Barrett, Beatrix E Beisner, Graham Bell, Viviane Yargeau, Gregor F Fussmann, Andrew Gonzalez, B Jesse Shapiro
Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment. Molecular ecology 30 (19) (2021)
Naïma Madi, Michiel Vos, Carmen Lia Murall, Pierre Legendre, B Jesse Shapiro
Does diversity beget diversity in microbiomes? eLife 9 (2020)
Saber Moradinejad, Hana Trigui, Juan Francisco Guerra Maldonado, B Jesse Shapiro, Yves Terrat, Arash Zamyadi, Sarah Dorner, Michèle Prévost
Diversity Assessment of Toxic Cyanobacterial Blooms during Oxidation. Toxins 12 (11) (2020)
Vincent Fugère, Marie-Pier Hébert, Naíla Barbosa da Costa, Charles C Y Xu, Rowan D H Barrett, Beatrix E Beisner, Graham Bell, Gregor F Fussmann, B Jesse Shapiro, Viviane Yargeau, Andrew Gonzalez
Community rescue in experimental phytoplankton communities facing severe herbicide pollution. Nature ecology & evolution 4 (4) (2020)
Nicolas Tromas, Zofia E Taranu, Mathieu Castelli, Juliana S M Pimentel, Daniel A Pereira, Romane Marcoz, B Jesse Shapiro, Alessandra Giani
The evolution of realized niches within freshwater Synechococcus. Environmental microbiology 22 (4) (2020)
Susanne A Kraemer, N Barbosa da Costa, B Jesse Shapiro, M Fradette, Y Huot, D A Walsh
A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities. The ISME journal 14 (12) (2020)
Olga M Pérez-Carrascal, Yves Terrat, Alessandra Giani, Nathalie Fortin, Charles W Greer, Nicolas Tromas, B Jesse Shapiro
Coherence of Microcystis species revealed through population genomics. The ISME journal 13 (12) (2019)
B Jesse Shapiro
Reuniting ecology and evolution. Environmental microbiology reports 11 (1) (2018)
Catherine Girard, Nicolas Tromas, Marc Amyot, B Jesse Shapiro
Gut Microbiome of the Canadian Arctic Inuit. mSphere 2 (1) (2017)