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volume 18, number 1, 2024

Mengxiong Wu, Jie Li, Chun-Yu Lai, Andy O Leu, Shengjie Sun, Rui Gu, Dirk V Erler, Lian Liu, Lin Li, Gene W Tyson, Zhiguo Yuan, Simon J McIlroy, Jianhua Guo
Nitrate-driven anaerobic oxidation of ethane and butane by bacteria. The ISME journal 18 (1) (2024)
Tomoya Ishii, Natsuki Tsuchida, Niarsi Merry Hemelda, Kirara Saito, Jiyuan Bao, Megumi Watanabe, Atsushi Toyoda, Takehiro Matsubara, Mayuko Sato, Kiminori Toyooka, Nobuaki Ishihama, Ken Shirasu, Hidenori Matsui, Kazuhiro Toyoda, Yuki Ichinose, Tetsuya Hayashi, Akira Kawaguchi, Yoshiteru Noutoshi
Rhizoviticin is an alphaproteobacterial tailocin that mediates biocontrol of grapevine crown gall disease. The ISME journal 18 (1) (2024)
Bridget N J Watson, Loris Capria, Ellinor O Alseth, Benoit J Pons, Ambarish Biswas, Luca Lenzi, Angus Buckling, Stineke van Houte, Edze R Westra, Sean Meaden
CRISPR-Cas in Pseudomonas aeruginosa provides transient population-level immunity against high phage exposures. The ISME journal 18 (1) (2024)
Hao Zhang, Ferdi L Hellweger, Haiwei Luo
Genome reduction occurred in early Prochlorococcus with an unusually low effective population size. The ISME journal 18 (1) (2024)
Paul Layoun, Mario López-Pérez, Jose M Haro-Moreno, Markus Haber, J Cameron Thrash, Michael W Henson, Vinicius Silva Kavagutti, Rohit Ghai, Michaela M Salcher
Flexible genomic island conservation across freshwater and marine Methylophilaceae. The ISME journal 18 (1) (2024)
Brandon M Stephens, Colleen A Durkin, Garrett Sharpe, Trang T H Nguyen, Justine Albers, Margaret L Estapa, Deborah K Steinberg, Naomi M Levine, Scott M Gifford, Craig A Carlson, Philip W Boyd, Alyson E Santoro
Direct observations of microbial community succession on sinking marine particles. The ISME journal 18 (1) (2024)
Sebastian Miksch, Luis H Orellana, Monike Oggerin de Orube, Silvia Vidal-Melgosa, Vipul Solanki, Jan-Hendrik Hehemann, Rudolf Amann, Katrin Knittel
Taxonomic and functional stability overrules seasonality in polar benthic microbiomes. The ISME journal 18 (1) (2024)
Jun Hu, Jianwei Chen, Libao Ma, Qiliang Hou, Yong Zhang, Xiangfeng Kong, Xingguo Huang, Zhonglin Tang, Hong Wei, Xiangru Wang, Xianghua Yan
Characterizing core microbiota and regulatory functions of the pig gut microbiome. The ISME journal 18 (1) (2024)
Stella Z Buchwald, Ulrike Herzschuh, Dirk Nürnberg, Lars Harms, Kathleen R Stoof-Leichsenring
Plankton community changes during the last 124 000 years in the subarctic Bering Sea derived from sedimentary ancient DNA. The ISME journal 18 (1) (2024)
Xiuran Yin, Guowei Zhou, Haihua Wang, Dukki Han, Mara Maeke, Tim Richter-Heitmann, Lea C Wunder, David A Aromokeye, Qing-Zeng Zhu, Rolf Nimzyk, Marcus Elvert, Michael W Friedrich
Unexpected carbon utilization activity of sulfate-reducing microorganisms in temperate and permanently cold marine sediments. The ISME journal 18 (1) (2024)
Liang Shen, Yongqin Liu, Liangzhong Chen, Tingting Lei, Ping Ren, Mukan Ji, Weizhi Song, Hao Lin, Wei Su, Sheng Wang, Marianne Rooman, Fabrizio Pucci
Genomic basis of environmental adaptation in the widespread poly-extremophilic Exiguobacterium group. The ISME journal 18 (1) (2024)
Andrew W Sher, Jayde A Aufrecht, Daisy Herrera, Amy E Zimmerman, Young-Mo Kim, Nathalie Munoz, Jesse B Trejo, Vanessa L Paurus, John B Cliff, Dehong Hu, William B Chrisler, Robert J Tournay, Emma Gomez-Rivas, Galya Orr, Amir H Ahkami, Sharon L Doty
Dynamic nitrogen fixation in an aerobic endophyte of Populus. The ISME journal 18 (1) (2024)
Justin Maire, Sarah Jane Tsang Min Ching, Katarina Damjanovic, Hannah E Epstein, Louise M Judd, Linda L Blackall, Madeleine J H van Oppen
Tissue-associated and vertically transmitted bacterial symbiont in the coral Pocillopora acuta. The ISME journal 18 (1) (2024)
David Benito Merino, Julius S Lipp, Guillaume Borrel, Antje Boetius, Gunter Wegener
Anaerobic hexadecane degradation by a thermophilic Hadarchaeon from Guaymas Basin. The ISME journal 18 (1) (2024)
Eugene V Koonin, J Thomas Beatty, Valerian V Dolja, Mart Krupovic
Megataxonomy and global ecology of the virosphere. The ISME journal 18 (1) (2024)
Yue Huang, Anxin Pan, Ying Song, Yu Deng, Alnwick Long-Hei Wu, Colin Shiu-Hay Lau, Tong Zhang
Strain-level diversity in sulfonamide biodegradation: adaptation of Paenarthrobacter to sulfonamides. The ISME journal 18 (1) (2024)
Xiaolong Wang, Hanhui Zhang, Shenbo Yu, Donghang Li, Michael R Gillings, Hongqiang Ren, Daqing Mao, Jianhua Guo, Yi Luo
Inter-plasmid transfer of antibiotic resistance genes accelerates antibiotic resistance in bacterial pathogens. The ISME journal 18 (1) (2024)
Xueyuan Du, Ning Liu, Bingfa Yan, Yisong Li, Minghao Liu, Ying Huang
Proximity-based defensive mutualism between Streptomyces and Mesorhizobium by sharing and sequestering iron. The ISME journal 18 (1) (2024)
Pu-Ting Dong, Jing Tian, Koseki J Kobayashi-Kirschvink, Lujia Cen, Jeffrey S McLean, Batbileg Bor, Wenyuan Shi, Xuesong He
Episymbiotic Saccharibacteria induce intracellular lipid droplet production in their host bacteria. The ISME journal 18 (1) (2024)
Alain Filloux
Bacterial type VI secretion system helps prevent cheating in microbial communities. The ISME journal 18 (1) (2024)
Tess F Hutchinson, Adam J Kessler, Wei Wen Wong, Puspitaningsih Hall, Pok Man Leung, Thanavit Jirapanjawat, Chris Greening, Ronnie N Glud, Perran L M Cook
Microorganisms oxidize glucose through distinct pathways in permeable and cohesive sediments. The ISME journal 18 (1) (2024)
Tong-Tong Pei, Han Luo, Yuanyuan Wang, Hao Li, Xing-Yu Wang, Yi-Qiu Zhang, Ying An, Li-Li Wu, Junhua Ma, Xiaoye Liang, Aixin Yan, Liang Yang, Changbin Chen, Tao Dong
Filamentous prophage Pf4 promotes genetic exchange in Pseudomonas aeruginosa. The ISME journal 18 (1) (2024)
Cristina Díez-Vives, Ana Riesgo
High compositional and functional similarity in the microbiome of deep-sea sponges. The ISME journal 18 (1) (2024)
Hui Lin, Donglin Wang, Qiaojuan Wang, Jie Mao, Yaohui Bai, Jiuhui Qu
Interspecific competition prevents the proliferation of social cheaters in an unstructured environment. The ISME journal 18 (1) (2024)
Junbeom Lee, Bohyun Jeong, Jeongtae Kim, Jae H Cho, Jin H Byeon, Bok L Lee, Jiyeun K Kim
Specialized digestive mechanism for an insect-bacterium gut symbiosis. The ISME journal 18 (1) (2024)
Li Song, Lei Xu, Tong Wu, Zhenkun Shi, Hafiz Abdul Kareem, Zhuo Wang, Qingyun Dai, Chenghao Guo, Junfeng Pan, Mingming Yang, Xiaomeng Wei, Yao Wang, Gehong Wei, Xihui Shen
Trojan horselike T6SS effector TepC mediates both interference competition and exploitative competition. The ISME journal 18 (1) (2024)
Neil R Gottel, Megan S Hill, Maxwell J Neal, Sarah M Allard, Karsten Zengler, Jack A Gilbert
Biocontrol in built environments to reduce pathogen exposure and infection risk. The ISME journal 18 (1) (2024)
Zhen-Hao Luo, Qi Li, Yuan-Guo Xie, Ai-Ping Lv, Yan-Ling Qi, Meng-Meng Li, Yan-Ni Qu, Ze-Tao Liu, Yu-Xian Li, Yang-Zhi Rao, Jian-Yu Jiao, Lan Liu, Manik Prabhu Narsing Rao, Brian P Hedlund, Paul N Evans, Yuan Fang, Wen-Sheng Shu, Li-Nan Huang, Wen-Jun Li, Zheng-Shuang Hua
Temperature, pH, and oxygen availability contributed to the functional differentiation of ancient Nitrososphaeria. The ISME journal 18 (1) (2024)
Mark Lyng, Johan P B Jørgensen, Morten D Schostag, Scott A Jarmusch, Diana K C Aguilar, Carlos N Lozano-Andrade, Ákos T Kovács
Competition for iron shapes metabolic antagonism between Bacillus subtilis and Pseudomonas marginalis. The ISME journal 18 (1) (2024)
Xiaoqian Annie Yu, Craig McLean, Jan-Hendrik Hehemann, David Angeles-Albores, Fuqing Wu, Artur Muszyński, Christopher H Corzett, Parastoo Azadi, Elizabeth B Kujawinski, Eric J Alm, Martin F Polz
Low-level resource partitioning supports coexistence among functionally redundant bacteria during successional dynamics. The ISME journal 18 (1) (2024)
Dikla Kolan, Esther Cattan-Tsaushu, Hagay Enav, Zohar Freiman, Nechama Malinsky-Rushansky, Shira Ninio, Sarit Avrani
Tradeoffs between phage resistance and nitrogen fixation drive the evolution of genes essential for cyanobacterial heterocyst functionality. The ISME journal 18 (1) (2024)
Wei Zhu, Liming Chang, Shengchao Shi, Ningning Lu, Simeng Du, Jiatang Li, Jianping Jiang, Bin Wang
Gut microbiota reflect adaptation of cave-dwelling tadpoles to resource scarcity. The ISME journal 18 (1) (2024)
Yue Zheng, Baozhan Wang, Ping Gao, Yiyan Yang, Bu Xu, Xiaoquan Su, Daliang Ning, Qing Tao, Qian Li, Feng Zhao, Dazhi Wang, Yao Zhang, Meng Li, Mari-K H Winkler, Anitra E Ingalls, Jizhong Zhou, Chuanlun Zhang, David A Stahl, Jiandong Jiang, Willm Martens-Habbena, Wei Qin
Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments. The ISME journal 18 (1) (2024)
Xinran Qiu, Sirui Ma, Jianrui Pan, Qian Cui, Wei Zheng, Ling Ding, Xujun Liang, Baile Xu, Xuetao Guo, Matthias C Rillig
Microbial metabolism influences microplastic perturbation of dissolved organic matter in agricultural soils. The ISME journal 18 (1) (2024)
Xueyuan Du, Ning Liu, Bingfa Yan, Yisong Li, Minghao Liu, Ying Huang
Proximity-based defensive mutualism between Streptomyces and Mesorhizobium by sharing and sequestering iron. The ISME journal 18 (1) (2024)
Xiaolong Wang, Hanhui Zhang, Shenbo Yu, Donghang Li, Michael R Gillings, Hongqiang Ren, Daqing Mao, Jianhua Guo, Yi Luo
Inter-plasmid transfer of antibiotic resistance genes accelerates antibiotic resistance in bacterial pathogens. The ISME journal 18 (1) (2024)
Dahe Zhao, Shengjie Zhang, Junyu Chen, Juanjuan Zhao, Peng An, Hua Xiang
Members of the class Candidatus Ordosarchaeia imply an alternative evolutionary scenario from methanogens to haloarchaea. The ISME journal 18 (1) (2024)
Corey Nelson, Pavani Dadi, Dhara D Shah, Ferran Garcia-Pichel
Spatial organization of a soil cyanobacterium and its cyanosphere through GABA/Glu signaling to optimize mutualistic nitrogen fixation. The ISME journal 18 (1) (2024)
Pu-Ting Dong, Jing Tian, Koseki J Kobayashi-Kirschvink, Lujia Cen, Jeffrey S McLean, Batbileg Bor, Wenyuan Shi, Xuesong He
Episymbiotic Saccharibacteria induce intracellular lipid droplet production in their host bacteria. The ISME journal 18 (1) (2024)
Corey Nelson, Pavani Dadi, Dhara D Shah, Ferran Garcia-Pichel
Spatial organization of a soil cyanobacterium and its cyanosphere through GABA/Glu signaling to optimize mutualistic nitrogen fixation. The ISME journal 18 (1) (2024)
Matéo Léger-Pigout, Elisabeth Navarro, Frédéric Ménard, Sandrine Ruitton, François Le Loc'h, Sophie Guasco, Jean-Marie Munaron, Delphine Thibault, Thomas Changeux, Solène Connan, Valérie Stiger-Pouvreau, Thierry Thibaut, Valérie Michotey
Predominant heterotrophic diazotrophic bacteria are involved in Sargassum proliferation in the Great Atlantic Sargassum Belt. The ISME journal 18 (1) (2024)
Xueyuan Du, Ning Liu, Bingfa Yan, Yisong Li, Minghao Liu, Ying Huang
Proximity-based defensive mutualism between Streptomyces and Mesorhizobium by sharing and sequestering iron. The ISME journal 18 (1) (2024)
Quanbin Dong, Dongxu Hua, Xiuchao Wang, Yuwen Jiao, Lu Liu, Qiufeng Deng, Tingting Wu, Huayiyang Zou, Chen Zhao, Chengkun Wang, Jiafa Reng, Luoyang Ding, Shixian Hu, Jing Shi, Yifeng Wang, Haifeng Zhang, Yanhui Sheng, Wei Sun, Yizhao Shen, Liming Tang, Xiangqing Kong, Lianmin Chen
Temporal colonization and metabolic regulation of the gut microbiome in neonatal oxen at single nucleotide resolution. The ISME journal 18 (1) (2024)
Jinzhen Jiao, Jian Wu, Chuanshe Zhou, Zhixiong He, Zhiliang Tan, Min Wang
Ecological niches and assembly dynamics of diverse microbial consortia in the gastrointestine of goat kids. The ISME journal 18 (1) (2024)
Brittany N Zepernick, Emily E Chase, Elizabeth R Denison, Naomi E Gilbert, Alexander R Truchon, Thijs Frenken, William R Cody, Robbie M Martin, Justin D Chaffin, George S Bullerjahn, R Michael L McKay, Steven W Wilhelm
Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms. The ISME journal 18 (1) (2024)
Xueyuan Du, Ning Liu, Bingfa Yan, Yisong Li, Minghao Liu, Ying Huang
Proximity-based defensive mutualism between Streptomyces and Mesorhizobium by sharing and sequestering iron. The ISME journal 18 (1) (2024)
Johannes Holert, Aron Borker, Laura Lucia Nübel, Rolf Daniel, Anja Poehlein, Bodo Philipp
Bacteria use a catabolic patchwork pathway of apparently recent origin for degradation of the synthetic buffer compound TRIS. The ISME journal 18 (1) (2024)
Gaofei Jiang, Chen Liu, Wu Xiong, Qirong Shen, Zhong Wei
Protist predation selects for the soil resistome. The ISME journal 18 (1) (2024)
Shan Gao, Wenting Yang, Xin Li, Lu Zhou, Xuehua Liu, Songcui Wu, Lijun Wang, Guangce Wang
Cryptochrome PtCPF1 regulates high temperature acclimation of marine diatoms through coordination of iron and phosphorus uptake. The ISME journal 18 (1) (2024)
Qiushuang Li, Zhiyuan Ma, Jiabin Huo, Xiumin Zhang, Rong Wang, Shizhe Zhang, Jinzhen Jiao, Xiyang Dong, Peter H Janssen, Emilio M Ungerfeld, Chris Greening, Zhiliang Tan, Min Wang
Distinct microbial hydrogen and reductant disposal pathways explain interbreed variations in ruminant methane yield. The ISME journal 18 (1) (2024)