Bercem Dutagaci

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 8

Top Topics

Molecular Dynamics Simulations

Molecularly Imprinted

Single Molecule

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Journal of chemical information and modeling

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Michael F Feig, Jihnu Song, Artem Lyubimov, Aina E Cohen, Craig D Kaplan, Guillermo Calero
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Michael F Feig, Jihnu Song, Artem Lyubimov, Aina E Cohen, Craig D Kaplan, Guillermo Calero
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Guowu Lin, Christopher O Barnes, Simon Weiss, Bercem Dutagaci, Chenxi Qiu, Michael F Feig, Jihnu Song, Artem Lyubimov, Aina E Cohen, Craig D Kaplan, Guillermo Calero
Structural basis of transcription: RNA polymerase II substrate binding and metal coordination using a free-electron laser. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Weththasinghage D Amith, Bercem Dutagaci
Complex Conformational Space of the RNA Polymerase II C-Terminal Domain upon Phosphorylation. The journal of physical chemistry. B (2023)
Adan Gallardo, Bercem Dutagaci
Binding of small molecule inhibitors to RNA polymerase-Spt5 complex impacts RNA and DNA stability. Journal of computer-aided molecular design 38 (1) (2023)
Adan Gallardo, Brandon M Bogart, Bercem Dutagaci
Protein-Nucleic Acid Interactions for RNA Polymerase II Elongation Factors by Molecular Dynamics Simulations. Journal of chemical information and modeling 62 (12) (2022)
Bercem Dutagaci, Grzegorz Nawrocki, Joyce Goodluck, Ali Akbar Ashkarran, Charles G Hoogstraten, Lisa J Lapidus, Michael F Feig
Charge-driven condensation of RNA and proteins suggests broad role of phase separation in cytoplasmic environments. eLife 10 (2021)
Stephanie A Brocke, Alexandra Degen, Alexander D MacKerell, Bercem Dutagaci, Michael F Feig
Prediction of Membrane Permeation of Drug Molecules by Combining an Implicit Membrane Model with Machine Learning. Journal of chemical information and modeling 59 (3) (2018)