Carlos F Lopez

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 16

Top Venues

PLoS computational biology

Journal of proteome research

Proceedings of the National Academy of Sciences of the United States of America

NPJ systems biology and applications

Vanderbilt University

University of Pennsylvania (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Vanderbilt University Jul 01 2016

United States

Assistant Professor :: Biochemistry

Vanderbilt University Aug 31 2012 - Jun 30 2016

United States

Assistant Professor :: Cancer Biology

Education History

University of Pennsylvania Sep 01 1998 - May 30 2004

United States

PHD :: Chemistry

University of Miami Sep 01 1993 - May 30 1998

United States

BSC :: Chemistry / Liberal Arts

Publications

Mustafa Ozen, Carlos F Lopez
Data-driven structural analysis of small cell lung cancer transcription factor network suggests potential subtype regulators and transition pathways. NPJ systems biology and applications 9 (1) (2023)
Maria-Fernanda Senosain, Yong Zou, Khushbu Patel, Shilin Zhao, Alexis Coullomb, Dianna J Rowe, Jonathan M Lehman, Jonathan Michael Irish, Fabien Maldonado, Michael N Kammer, Vera Pancaldi, Carlos F Lopez
Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness. Cancer research communications 3 (7) (2023)
Michael W Irvin, Arvind Ramanathan, Carlos F Lopez
Model certainty in cellular network-driven processes with missing data. PLoS computational biology 19 (4) (2023)
Samantha P Beik, Leonard A Harris, Michael A Kochen, Julien Sage, Vito Quaranta, Carlos F Lopez
Unified tumor growth mechanisms from multimodel inference and dataset integration. PLoS computational biology 19 (7) (2023)
Mustafa Ozen, Carlos F Lopez
Data-driven structural analysis of Small Cell Lung Cancer transcription factor network suggests potential subtype regulators and transition pathways. bioRxiv : the preprint server for biology (2023)
Michael W Irvin, Arvind Ramanathan, Carlos F Lopez
Model certainty in cellular network-driven processes with missing data. PLoS computational biology 19 (4) (2023)
Michael W Irvin, Arvind Ramanathan, Carlos F Lopez
Model certainty in cellular network-driven processes with missing data. PLoS computational biology 19 (4) (2023)
Michael W Irvin, Arvind Ramanathan, Carlos F Lopez
Model certainty in cellular network-driven processes with missing data. PLoS computational biology 19 (4) (2023)
Alexander L R Lubbock, Carlos F Lopez
Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python. Bioinformatics (Oxford, England) 38 (20) (2022)
Martina Prugger, Lukas Einkemmer, Samantha P Beik, Perry T Wasdin, Leonard A Harris, Carlos F Lopez
Unsupervised logic-based mechanism inference for network-driven biological processes. PLoS computational biology 17 (6) (2021)
Alexander L R Lubbock, Leonard A Harris, Vito Quaranta, Darren R Tyson, Carlos F Lopez
Thunor: visualization and analysis of high-throughput dose-response datasets. Nucleic acids research 49 (W1) (2021)
David J Wooten, Christian T Meyer, Alexander L R Lubbock, Vito Quaranta, Carlos F Lopez
MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery. Nature communications 12 (1) (2021)
Leonardo Rundo, Andrea Tangherloni, Darren R Tyson, Riccardo Betta, Carmelo Militello, Simone Spolaor, Marco Salvatore Nobile, Daniela Besozzi, Alexander L R Lubbock, Vito Quaranta, Giancarlo Mauri, Carlos F Lopez, Paolo Cazzaniga
ACDC: Automated Cell Detection and Counting for Time-Lapse Fluorescence Microscopy. Applied sciences (Basel, Switzerland) 10 (18) (2020)
Nicole A Perry, Tamer S Kaoud, Oscar O Ortega, Ali I Kaya, David J Marcus, John M Pleinis, Sandra Berndt, Qiuyan Chen, Xuanzhi Zhan, Kevin N Dalby, Carlos F Lopez, Tina M Iverson, Vsevolod V Gurevich
Arrestin-3 scaffolding of the JNK3 cascade suggests a mechanism for signal amplification. Proceedings of the National Academy of Sciences of the United States of America 116 (3) (2018)
Jeremy L Norris, Melissa A Farrow, Danielle B Gutierrez, Lauren D Palmer, Nicole Muszynski, Stacy D Sherrod, James C Pino, Jamie L Allen, Jeffrey M Spraggins, Alex L R Lubbock, Ashley Jordan, William Burns, James C Poland, Carrie Romer, M Lisa Manier, Yuan-Wei Nei, Boone M Prentice, Kristie L Rose, Salisha Hill, Raf Van de Plas, Tina Tsui, Nathaniel M Braman, M Ray Keller, Stacey A Rutherford, Nichole Lobdell, Carlos F Lopez, D Borden Lacy, John A McLean, John P Wikswo, Eric P Skaar, Richard M Caprioli
Integrated, High-Throughput, Multiomics Platform Enables Data-Driven Construction of Cellular Responses and Reveals Global Drug Mechanisms of Action. Journal of proteome research 16 (3) (2017)
Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C Pino, Leonard A Harris, Michael A Kochen, Carlos F Lopez, Steven A Akman, Frank M Torti, Suzy V Torti, Reinhard Laubenbacher
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. PLoS computational biology 13 (2) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Carlos F Lopez