Cheng Tan

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

The journal of physical chemistry. B

PLoS computational biology

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

RIKEN

Nanjing University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

RIKEN May 01 2019

Japan

Postdoctoral Researcher

Kyoto University Jul 01 2014 - Apr 30 2019

Japan

Postdoctoral researcher :: Biophysics Department

Education History

Nanjing University Sep 01 2007 - Jun 24 2014

China

PHD :: Physics Department

Nanjing University Sep 01 2003 - Jun 30 2007

China

BSC :: Physics Department

Publications

Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B 128 (25) (2024)
Jaewoon Jung, Cheng Tan, Yuji Sugita
GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems. Nature communications 15 (1) (2024)
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B (2024)
Jaewoon Jung, Cheng Tan, Yuji Sugita
GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems. Nature communications 15 (1) (2024)
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B 128 (25) (2024)
Jaewoon Jung, Cheng Tan, Yuji Sugita
GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems. Nature communications 15 (1) (2024)
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B 128 (25) (2024)
Jaewoon Jung, Cheng Tan, Yuji Sugita
GENESIS CGDYN: large-scale coarse-grained MD simulation with dynamic load balancing for heterogeneous biomolecular systems. Nature communications 15 (1) (2024)
Cheng Tan, Ai Niitsu, Yuji Sugita
Highly Charged Proteins and Their Repulsive Interactions Antagonize Biomolecular Condensation. JACS Au 3 (3) (2023)
Azuki Mizutani, Cheng Tan, Yuji Sugita, Shoji Takada
Micelle-like clusters in phase-separated Nanog condensates: A molecular simulation study. PLoS computational biology 19 (7) (2023)
Xingyue Guan, Cheng Tan, Wenfei Li, Wei Wang, D Thirumalai
Role of water-bridged interactions in metal ion coupled protein allostery. PLoS computational biology 18 (6) (2022)
Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Diego Ugarte La Torre, Shoji Takada, Yuji Sugita
Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations. PLoS computational biology 18 (4) (2022)
Giovanni B Brandani, Cheng Tan, Shoji Takada
The kinetic landscape of nucleosome assembly: A coarse-grained molecular dynamics study. PLoS computational biology 17 (7) (2021)
Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Yuji Sugita
A singularity-free torsion angle potential for coarse-grained molecular dynamics simulations. The Journal of chemical physics 153 (4) (2021)
Cheng Tan, Shoji Takada
Nucleosome allostery in pioneer transcription factor binding. Proceedings of the National Academy of Sciences of the United States of America 117 (34) (2020)
Cheng Tan, Shoji Takada
Dynamic and Structural Modeling of the Specificity in Protein-DNA Interactions Guided by Binding Assay and Structure Data. Journal of chemical theory and computation 14 (7) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Cheng Tan