Hiraku Oshima

Scopus Author ID Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 11

Top Venues

The journal of physical chemistry. B

Journal of chemical information and modeling

Journal of chemical theory and computation

The journal of physical chemistry letters

RIKEN Center for Biosystems Dynamics Research

This page only lists publications with an associated author ORCID identifier.

Affiliation History

RIKEN Center for Biosystems Dynamics Research Apr 01 2016

Japan

Postdoctoral Researcher

Publications

Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B 128 (25) (2024)
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B (2024)
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B 128 (25) (2024)
Jaewoon Jung, Kiyoshi Yagi, Cheng Tan, Hiraku Oshima, Takaharu Mori, Isseki Yu, Yasuhiro Matsunaga, Chigusa Kobayashi, Shingo Ito, Diego Ugarte La Torre, Yuji Sugita
GENESIS 2.1: High-Performance Molecular Dynamics Software for Enhanced Sampling and Free-Energy Calculations for Atomistic, Coarse-Grained, and Quantum Mechanics/Molecular Mechanics Models. The journal of physical chemistry. B 128 (25) (2024)
Hiraku Oshima, Yuji Sugita
Modified Hamiltonian in FEP Calculations for Reducing the Computational Cost of Electrostatic Interactions. Journal of chemical information and modeling 62 (11) (2022)
Kento Kasahara, Suyong Re, Grzegorz Nawrocki, Hiraku Oshima, Chiemi Mishima-Tsumagari, Yukako Miyata-Yabuki, Mutsuko Kukimoto-Niino, Isseki Yu, Mikako Shirouzu, Michael F Feig, Yuji Sugita
Reduced efficacy of a Src kinase inhibitor in crowded protein solution. Nature communications 12 (1) (2021)
Weitong Ren, Hisham M Dokainish, Ai Shinobu, Hiraku Oshima, Yuji Sugita
Unraveling the Coupling between Conformational Changes and Ligand Binding in Ribose Binding Protein Using Multiscale Molecular Dynamics and Free-Energy Calculations. The journal of physical chemistry. B 125 (11) (2021)
Jaewoon Jung, Kento Kasahara, Chigusa Kobayashi, Hiraku Oshima, Takaharu Mori, Yuji Sugita
Optimized Hydrogen Mass Repartitioning Scheme Combined with Accurate Temperature/Pressure Evaluations for Thermodynamic and Kinetic Properties of Biological Systems. Journal of chemical theory and computation 17 (8) (2021)
Daisuke Fujinami, Hajime Motomura, Hiraku Oshima, Abdullah-Al- Mahin, Khaled M Elsayed, Takeshi Zendo, Yuji Sugita, Kenji Sonomoto, Daisuke Kohda
Correction to "Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis". The journal of physical chemistry letters 12 (44) (2021)
Hiraku Oshima, Suyong Re, Yuji Sugita
Prediction of Protein-Ligand Binding Pose and Affinity Using the gREST+FEP Method. Journal of chemical information and modeling 60 (11) (2020)
Seonghoon Kim, Hiraku Oshima, Han Zhang, Nathan R Kern, Suyong Re, Jumin Lee, Benoı T Roux, Yuji Sugita, Wei Jiang, Wonpil Im
CHARMM-GUI Free Energy Calculator for Absolute and Relative Ligand Solvation and Binding Free Energy Simulations. Journal of chemical theory and computation 16 (11) (2020)

Hiraku Oshima.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Hiraku Oshima