Colleen Reilly

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 17

Top Topics

Systemic Lupus Erythematosus

Respiratory Failure

Hematopoietic Stem Cell

Top Venues

Cancer discovery

bioRxiv : the preprint server for biology

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Gavriel Y Matt, Edgar Sioson, Kyla C Shelton, Jian Wang, Congyu Lu, Airen Zaldivar Peraza, Karishma Gangwani, Robin Paul, Colleen Reilly, Aleksandar Acić, Qi Liu, Stephanie R Sandor, Clay McLeod, Jaimin Patel, Fan Wang, Cindy Im, Zhaoming Wang, Yadav Sapkota, Carmen L Wilson, Nickhill H Bhakta, Kristen K Ness, Gregory T Armstrong, Melissa M Hudson, Leslie L Robison, Jinghui Zhang, Yutaka Yasui, Xin Zhou
St. Jude Survivorship Portal: Sharing and Analyzing Large Clinical and Genomic Datasets from Pediatric Cancer Survivors. Cancer discovery 14 (8) (2024)
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun J Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather S Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Z Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity. bioRxiv : the preprint server for biology (2024)
Gavriel Y Matt, Edgar Sioson, Kyla C Shelton, Jian Wang, Congyu Lu, Airen Zaldivar Peraza, Karishma Gangwani, Robin Paul, Colleen Reilly, Aleksandar Acić, Qi Liu, Stephanie R Sandor, Clay McLeod, Jaimin Patel, Fan Wang, Cindy Im, Zhaoming Wang, Yadav Sapkota, Carmen L Wilson, Nickhill H Bhakta, Kristen K Ness, Gregory T Armstrong, Melissa M Hudson, Leslie L Robison, Jinghui Zhang, Yutaka Yasui, Xin Zhou
St. Jude Survivorship Portal: sharing and analyzing large clinical and genomic datasets from pediatric cancer survivors. Cancer discovery (2024)
Petri Polonen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen, Zhongshan Cheng, Haley Newman, Jason R Myers, Ilaria Iacobucci, Elizabeth Li, Jonathan H Sussman, Dale Hedges, Yawei Hui, Caroline Diorio, Lahari Uppuluri, David Frank, Yiping Fan, Yunchao Chang, Soheil Meshinchi, Rhonda E Ries, Rawan Shraim, Alexander Li, Kathrin Maria Bernt, Meenakshi Devidas, Stuart S Winter, Kimberly P Dunsmore, Hiroto Inaba, William L Carroll, Nilsa C Ramirez, Aaron H Phillips, Richard W Kriwacki, Jun J Yang, Tiffaney L Vincent, Yaqi Zhao, Pankaj S Ghate, Jian Wang, Colleen Reilly, Xin Zhou, Mathijs A Sanders, Junko Takita, Motohiro Kato, Nao Takasugi, Bill H Chang, Richard D Press, Mignon L Loh, Evadnie Rampersaud, Elizabeth Raetz, Stephen P Hunger, Kai Tan, Ti-Cheng Chang, Gang Wu, Stanley B Pounds, Charles G Mullighan, David Trent Teachey
The genomic basis of childhood T-lineage acute lymphoblastic leukaemia. Nature 632 (8027) (2024)
Gavriel Y Matt, Edgar Sioson, Kyla C Shelton, Jian Wang, Congyu Lu, Airen Zaldivar Peraza, Karishma Gangwani, Robin Paul, Colleen Reilly, Aleksandar Acić, Qi Liu, Stephanie R Sandor, Clay McLeod, Jaimin Patel, Fan Wang, Cindy Im, Zhaoming Wang, Yadav Sapkota, Carmen L Wilson, Nickhill H Bhakta, Kristen K Ness, Gregory T Armstrong, Melissa M Hudson, Leslie L Robison, Jinghui Zhang, Yutaka Yasui, Xin Zhou
St. Jude Survivorship Portal: sharing and analyzing large clinical and genomic datasets from pediatric cancer survivors. Cancer discovery (2024)
Gavriel Y Matt, Edgar Sioson, Kyla C Shelton, Jian Wang, Congyu Lu, Airen Zaldivar Peraza, Karishma Gangwani, Robin Paul, Colleen Reilly, Aleksandar Acić, Qi Liu, Stephanie R Sandor, Clay McLeod, Jaimin Patel, Fan Wang, Cindy Im, Zhaoming Wang, Yadav Sapkota, Carmen L Wilson, Nickhill H Bhakta, Kristen K Ness, Gregory T Armstrong, Melissa M Hudson, Leslie L Robison, Jinghui Zhang, Yutaka Yasui, Xin Zhou
St. Jude Survivorship Portal: Sharing and Analyzing Large Clinical and Genomic Datasets from Pediatric Cancer Survivors. Cancer discovery 14 (8) (2024)
Petri Polonen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen, Zhongshan Cheng, Haley Newman, Jason R Myers, Ilaria Iacobucci, Elizabeth Li, Jonathan H Sussman, Dale Hedges, Yawei Hui, Caroline Diorio, Lahari Uppuluri, David Frank, Yiping Fan, Yunchao Chang, Soheil Meshinchi, Rhonda E Ries, Rawan Shraim, Alexander Li, Kathrin Maria Bernt, Meenakshi Devidas, Stuart S Winter, Kimberly P Dunsmore, Hiroto Inaba, William L Carroll, Nilsa C Ramirez, Aaron H Phillips, Richard W Kriwacki, Jun J Yang, Tiffaney L Vincent, Yaqi Zhao, Pankaj S Ghate, Jian Wang, Colleen Reilly, Xin Zhou, Mathijs A Sanders, Junko Takita, Motohiro Kato, Nao Takasugi, Bill H Chang, Richard D Press, Mignon L Loh, Evadnie Rampersaud, Elizabeth Raetz, Stephen P Hunger, Kai Tan, Ti-Cheng Chang, Gang Wu, Stanley B Pounds, Charles G Mullighan, David Trent Teachey
The genomic basis of childhood T-lineage acute lymphoblastic leukaemia. Nature (2024)
Petri Polonen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen, Zhongshan Cheng, Haley Newman, Jason R Myers, Ilaria Iacobucci, Elizabeth Li, Jonathan H Sussman, Dale Hedges, Yawei Hui, Caroline Diorio, Lahari Uppuluri, David Frank, Yiping Fan, Yunchao Chang, Soheil Meshinchi, Rhonda E Ries, Rawan Shraim, Alexander Li, Kathrin Maria Bernt, Meenakshi Devidas, Stuart S Winter, Kimberly P Dunsmore, Hiroto Inaba, William L Carroll, Nilsa C Ramirez, Aaron H Phillips, Richard W Kriwacki, Jun J Yang, Tiffaney L Vincent, Yaqi Zhao, Pankaj S Ghate, Jian Wang, Colleen Reilly, Xin Zhou, Mathijs A Sanders, Junko Takita, Motohiro Kato, Nao Takasugi, Bill H Chang, Richard D Press, Mignon L Loh, Evadnie Rampersaud, Elizabeth Raetz, Stephen P Hunger, Kai Tan, Ti-Cheng Chang, Gang Wu, Stanley B Pounds, Charles G Mullighan, David Trent Teachey
The genomic basis of childhood T-lineage acute lymphoblastic leukaemia. Nature (2024)
Petri Polonen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen, Zhongshan Cheng, Haley Newman, Jason R Myers, Ilaria Iacobucci, Elizabeth Li, Jonathan H Sussman, Dale Hedges, Yawei Hui, Caroline Diorio, Lahari Uppuluri, David Frank, Yiping Fan, Yunchao Chang, Soheil Meshinchi, Rhonda E Ries, Rawan Shraim, Alexander Li, Kathrin Maria Bernt, Meenakshi Devidas, Stuart S Winter, Kimberly P Dunsmore, Hiroto Inaba, William L Carroll, Nilsa C Ramirez, Aaron H Phillips, Richard W Kriwacki, Jun J Yang, Tiffaney L Vincent, Yaqi Zhao, Pankaj S Ghate, Jian Wang, Colleen Reilly, Xin Zhou, Mathijs A Sanders, Junko Takita, Motohiro Kato, Nao Takasugi, Bill H Chang, Richard D Press, Mignon L Loh, Evadnie Rampersaud, Elizabeth Raetz, Stephen P Hunger, Kai Tan, Ti-Cheng Chang, Gang Wu, Stanley B Pounds, Charles G Mullighan, David Trent Teachey
The genomic basis of childhood T-lineage acute lymphoblastic leukaemia. Nature (2024)
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun J Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather S Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Z Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity. bioRxiv : the preprint server for biology (2024)
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun J Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather S Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Z Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity. bioRxiv : the preprint server for biology (2024)
Petri Polonen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen, Zhongshan Cheng, Haley Newman, Jason R Myers, Ilaria Iacobucci, Elizabeth Li, Jonathan H Sussman, Dale Hedges, Yawei Hui, Caroline Diorio, Lahari Uppuluri, David Frank, Yiping Fan, Yunchao Chang, Soheil Meshinchi, Rhonda E Ries, Rawan Shraim, Alexander Li, Kathrin Maria Bernt, Meenakshi Devidas, Stuart S Winter, Kimberly P Dunsmore, Hiroto Inaba, William L Carroll, Nilsa C Ramirez, Aaron H Phillips, Richard W Kriwacki, Jun J Yang, Tiffaney L Vincent, Yaqi Zhao, Pankaj S Ghate, Jian Wang, Colleen Reilly, Xin Zhou, Mathijs A Sanders, Junko Takita, Motohiro Kato, Nao Takasugi, Bill H Chang, Richard D Press, Mignon L Loh, Evadnie Rampersaud, Elizabeth Raetz, Stephen P Hunger, Kai Tan, Ti-Cheng Chang, Gang Wu, Stanley B Pounds, Charles G Mullighan, David Trent Teachey
The genomic basis of childhood T-lineage acute lymphoblastic leukaemia. Nature 632 (8027) (2024)
Petri Polonen, Danika Di Giacomo, Anna Eames Seffernick, Abdelrahman Elsayed, Shunsuke Kimura, Francesca Benini, Lindsey E Montefiori, Brent L Wood, Jason Xu, Changya Chen, Zhongshan Cheng, Haley Newman, Jason R Myers, Ilaria Iacobucci, Elizabeth Li, Jonathan H Sussman, Dale Hedges, Yawei Hui, Caroline Diorio, Lahari Uppuluri, David Frank, Yiping Fan, Yunchao Chang, Soheil Meshinchi, Rhonda E Ries, Rawan Shraim, Alexander Li, Kathrin Maria Bernt, Meenakshi Devidas, Stuart S Winter, Kimberly P Dunsmore, Hiroto Inaba, William L Carroll, Nilsa C Ramirez, Aaron H Phillips, Richard W Kriwacki, Jun J Yang, Tiffaney L Vincent, Yaqi Zhao, Pankaj S Ghate, Jian Wang, Colleen Reilly, Xin Zhou, Mathijs A Sanders, Junko Takita, Motohiro Kato, Nao Takasugi, Bill H Chang, Richard D Press, Mignon L Loh, Evadnie Rampersaud, Elizabeth Raetz, Stephen P Hunger, Kai Tan, Ti-Cheng Chang, Gang Wu, Stanley B Pounds, Charles G Mullighan, David Trent Teachey
The genomic basis of childhood T-lineage acute lymphoblastic leukaemia. Nature 632 (8027) (2024)
Gavriel Y Matt, Edgar Sioson, Kyla C Shelton, Jian Wang, Congyu Lu, Airen Zaldivar Peraza, Karishma Gangwani, Robin Paul, Colleen Reilly, Aleksandar Acić, Qi Liu, Stephanie R Sandor, Clay McLeod, Jaimin Patel, Fan Wang, Cindy Im, Zhaoming Wang, Yadav Sapkota, Carmen L Wilson, Nickhill H Bhakta, Kristen K Ness, Gregory T Armstrong, Melissa M Hudson, Leslie L Robison, Jinghui Zhang, Yutaka Yasui, Xin Zhou
St. Jude Survivorship Portal: Sharing and Analyzing Large Clinical and Genomic Datasets from Pediatric Cancer Survivors. Cancer discovery 14 (8) (2024)
Robin Paul, Jian Wang, Colleen Reilly, Edgar Sioson, Jaimin Patel, Gavriel Matt, Aleksandar Acić, Xin Zhou
ppBAM: ProteinPaint BAM track for read alignment visualization and variant genotyping. Bioinformatics (Oxford, England) 39 (5) (2023)
Robin Paul, Jian Wang, Colleen Reilly, Edgar Sioson, Jaimin Patel, Gavriel Matt, Aleksandar Acić, Xin Zhou
ppBAM: ProteinPaint BAM track for read alignment visualization and variant genotyping. Bioinformatics (Oxford, England) 39 (5) (2023)
Lai Man Natalie Wu, Feng Zhang, Rohit Rao, Mike Adam, Kai Pollard, Sara Szabo, Xuezhao Liu, Katie A Belcher, Zaili Luo, Sean Ogurek, Colleen Reilly, Xin Zhou, Li Zhang, Joshua B Rubin, Long-Sheng Chang, Mei Xin, Jiyang Yu, Mario L Suvà, Christine A Pratilas, Steven Potter, Qing Richard Lu
Single-cell multiomics identifies clinically relevant mesenchymal stem-like cells and key regulators for MPNST malignancy. Science advances 8 (44) (2022)