Garry P Nolan (Garry Nolan)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 66

Top Topics

Machine Learning

Top Venues

Nature communications

Research square

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Tobias Roider, Marc-Andrea Baertsch, Donnacha Fitzgerald, Harald Vöhringer, Berit J Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Llaó-Cid, Anna Mathioudaki, Bianca Faßbender, Maxime Herbon, Tobias Lautwein, Peter-Martin Bruch, Nora Liebers, Christian M Schürch, Verena Passerini, Marc Seifert, Alexander Brobeil, Gunhild Mechtersheimer, Carsten Muller-Tidow, Oliver Weigert, Martina Seiffert, Garry P Nolan, Wolfgang Huber, Sascha Dietrich
Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities. Nature cell biology 26 (3) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun J Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather S Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Z Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity. bioRxiv : the preprint server for biology (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
Tobias Roider, Marc-Andrea Baertsch, Donnacha Fitzgerald, Harald Vöhringer, Berit J Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Llaó-Cid, Anna Mathioudaki, Bianca Faßbender, Maxime Herbon, Tobias Lautwein, Peter-Martin Bruch, Nora Liebers, Christian M Schürch, Verena Passerini, Marc Seifert, Alexander Brobeil, Gunhild Mechtersheimer, Carsten Muller-Tidow, Oliver Weigert, Martina Seiffert, Garry P Nolan, Wolfgang Huber, Sascha Dietrich
Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities. Nature cell biology 26 (3) (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Edward Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Nature communications 15 (1) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
Tobias Roider, Marc-Andrea Baertsch, Donnacha Fitzgerald, Harald Vöhringer, Berit J Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Llaó-Cid, Anna Mathioudaki, Bianca Faßbender, Maxime Herbon, Tobias Lautwein, Peter-Martin Bruch, Nora Liebers, Christian M Schürch, Verena Passerini, Marc Seifert, Alexander Brobeil, Gunhild Mechtersheimer, Carsten Muller-Tidow, Oliver Weigert, Martina Seiffert, Garry P Nolan, Wolfgang Huber, Sascha Dietrich
Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities. Nature cell biology 26 (3) (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Magdalena Matusiak, John W Hickey, David G P van IJzendoorn, Guolan Lu, Lukasz Kidziński, Shirley Zhu, Deana R C Colburg, Bogdan Luca, Darci J Phillips, Sky W Brubaker, Gregory W Charville, Jeanne Shen, Kyle M Loh, Derick K Okwan-Duodu, Garry P Nolan, Aaron M Newman, Robert B West, Matt van de Rijn
Spatially Segregated Macrophage Populations Predict Distinct Outcomes In Colon Cancer. Cancer discovery (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Tobias Roider, Marc-Andrea Baertsch, Donnacha Fitzgerald, Harald Vöhringer, Berit J Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Llaó-Cid, Anna Mathioudaki, Bianca Faßbender, Maxime Herbon, Tobias Lautwein, Peter-Martin Bruch, Nora Liebers, Christian M Schürch, Verena Passerini, Marc Seifert, Alexander Brobeil, Gunhild Mechtersheimer, Carsten Muller-Tidow, Oliver Weigert, Martina Seiffert, Garry P Nolan, Wolfgang Huber, Sascha Dietrich
Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities. Nature cell biology 26 (3) (2024)
Magdalena Matusiak, John W Hickey, David G P van IJzendoorn, Guolan Lu, Lukasz Kidziński, Shirley Zhu, Deana R C Colburg, Bogdan Luca, Darci J Phillips, Sky W Brubaker, Gregory W Charville, Jeanne Shen, Kyle M Loh, Derick K Okwan-Duodu, Garry P Nolan, Aaron M Newman, Robert B West, Matt van de Rijn
Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer. Cancer discovery 14 (8) (2024)
Tobias Roider, Marc-Andrea Baertsch, Donnacha Fitzgerald, Harald Vöhringer, Berit J Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Llaó-Cid, Anna Mathioudaki, Bianca Faßbender, Maxime Herbon, Tobias Lautwein, Peter-Martin Bruch, Nora Liebers, Christian M Schürch, Verena Passerini, Marc Seifert, Alexander Brobeil, Gunhild Mechtersheimer, Carsten Muller-Tidow, Oliver Weigert, Martina Seiffert, Garry P Nolan, Wolfgang Huber, Sascha Dietrich
Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities. Nature cell biology (2024)
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun J Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather S Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Z Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede C A da Conceição, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: enhancing omic data analyses. Nature methods 21 (7) (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Anand G Patel, Orr Ashenberg, Natalie B Collins, Åsa Segerstolpe, Sizun J Jiang, Michal Slyper, Xin Huang, Chiara Caraccio, Hongjian Jin, Heather S Sheppard, Ke Xu, Ti-Cheng Chang, Brent A Orr, Abbas Shirinifard, Richard H Chapple, Amber Shen, Michael R Clay, Ruth G Tatevossian, Colleen Reilly, Jaimin Patel, Marybeth Lupo, Cynthia Cline, Danielle Dionne, Caroline B M Porter, Julia Waldman, Yunhao Bai, Bokai Zhu, Irving Barrera, Evan Murray, Sébastien Vigneau, Sara Napolitano, Isaac Wakiro, Jingyi Wu, Grace Grimaldi, Laura Dellostritto, Karla Helvie, Asaf Rotem, Ana Lako, Nicole Cullen, Kathleen L Pfaff, Åsa Karlström, Judit Jané-Valbuena, Ellen Z Todres, Aaron Thorner, Paul Geeleher, Scott J Rodig, Xin Zhou, Elizabeth Stewart, Bruce E Johnson, Gang Wu, Fei Chen, Jiyang Yu, Yury Goltsev, Garry P Nolan, Orit Rozenblatt-Rosen, Aviv Regev, Michael A Dyer
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity. bioRxiv : the preprint server for biology (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
Tobias Roider, Marc-Andrea Baertsch, Donnacha Fitzgerald, Harald Vöhringer, Berit J Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Llaó-Cid, Anna Mathioudaki, Bianca Faßbender, Maxime Herbon, Tobias Lautwein, Peter-Martin Bruch, Nora Liebers, Christian M Schürch, Verena Passerini, Marc Seifert, Alexander Brobeil, Gunhild Mechtersheimer, Carsten Muller-Tidow, Oliver Weigert, Martina Seiffert, Garry P Nolan, Wolfgang Huber, Sascha Dietrich
Multimodal and spatially resolved profiling identifies distinct patterns of T cell infiltration in nodal B cell lymphoma entities. Nature cell biology 26 (3) (2024)
Qin Ma, Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jodran Krull, Scott Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Edward Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Nature communications 15 (1) (2024)
Magdalena Matusiak, John W Hickey, David G P van IJzendoorn, Guolan Lu, Lukasz Kidziński, Shirley Zhu, Deana R C Colburg, Bogdan Luca, Darci J Phillips, Sky W Brubaker, Gregory W Charville, Jeanne Shen, Kyle M Loh, Derick K Okwan-Duodu, Garry P Nolan, Aaron M Newman, Robert B West, Matt van de Rijn
Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer. Cancer discovery 14 (8) (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Magdalena Matusiak, John W Hickey, David G P van IJzendoorn, Guolan Lu, Lukasz Kidziński, Shirley Zhu, Deana R C Colburg, Bogdan Luca, Darci J Phillips, Sky W Brubaker, Gregory W Charville, Jeanne Shen, Kyle M Loh, Derick K Okwan-Duodu, Garry P Nolan, Aaron M Newman, Robert B West, Matt van de Rijn
Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer. Cancer discovery 14 (8) (2024)
William J Hutchison, Timothy J Keyes, null null, Helena Lucia Crowell, Jacques Serizay, Charlotte Soneson, Eric S Davis, Noriaki Sato, Lambda Moses, Boyd Tarlinton, Abdullah Al Nahid, Miha Kosmac, Quentin Clayssen, Victor Yuan, Wancen Mu, Ji-Eun Park, Izabela Mamede, Min Hyung Ryu, Pierre-Paul Axisa, Paulina Paiz, Chi-Lam Poon, Ming Tang, Raphaël Gottardo, Martin Morgan, Stuart Lee, Michael Lawrence, Stephanie C Hicks, Garry P Nolan, Kara L Davis, Anthony T Papenfuss, Michael I Love, Stefano Mangiola
The tidyomics ecosystem: Enhancing omic data analyses. bioRxiv : the preprint server for biology (2024)
Yuzhou Chang, Jixin Liu, Yi Jiang, Anjun Ma, Yao-Yu Yeo, Qi Guo, Megan McNutt, Jordan Krull, Scott J Rodig, Dan H Barouch, Garry P Nolan, Dong Xu, Sizun J Jiang, Zihai Li, Bingqiang Liu, Qin Ma
Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square (2024)
Muhammad Shaban, Yunhao Bai, Huaying Qiu, Shulin Mao, Jason Yeung, Yao-Yu Yeo, Vignesh Shanmugam, Han Chen, Bokai Zhu, Jason L Weirather, Garry P Nolan, Margaret A Shipp, Scott J Rodig, Sizun J Jiang, Faisal Mahmood
MAPS: pathologist-level cell type annotation from tissue images through machine learning. Nature communications 15 (1) (2024)
Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, John T Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv Sam Gambhir, William J Sandborn, Brigid S Boland, Trevor J Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan R Rogalla
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. Science advances 9 (3) (2023)
Magdalena Matusiak, John W Hickey, Bogdan Luca, Guolan Lu, Lukasz Kidzinski, Shirley Zhu, Deana Colburg, Darci J Phillips, Sky Brubaker, Gregory Charville, Jeanne Shen, Garry P Nolan, Aaron M Newman, Robert West, Matt van de Rijn
A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer. Research square (2023)
Jolanda Sarno, Pablo Domizi, Yuxuan Liu, Milton Merchant, Christina Bligaard Pedersen, Dorra Jedoui, Astraea Jager, Garry P Nolan, Giuseppe Gaipa, Sean C Bendall, Felice-Alessio Bava, Kara L Davis
Dasatinib overcomes glucocorticoid resistance in B-cell acute lymphoblastic leukemia. Nature communications 14 (1) (2023)
Shuxiao Chen, Bokai Zhu, Sijia Huang, John W Hickey, Kevin Z Lin, Michael Paul Snyder, William J Greenleaf, Garry P Nolan, Nancy R Zhang, Zongming Ma
Integration of spatial and single-cell data across modalities with weakly linked features. Nature biotechnology (2023)
Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, John T Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv Sam Gambhir, William J Sandborn, Brigid S Boland, Trevor J Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan R Rogalla
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. Science advances 9 (3) (2023)
Audrey Lee, Katharine A Floyd, Shengyang Wu, Zhouqing Fang, Tze Kai Tan, Heather M Froggatt, John M Powers, Sarah R Leist, Kendra L Gully, Miranda L Hubbard, Chunfeng Li, Harold Hui, David Scoville, Alistaire D Ruggiero, Yan Liang, Anna Pavenko, Victor Lujan, Ralph S Baric, Garry P Nolan, Prabhu S Arunachalam, Mehul S Suthar, Bali Pulendran
BCG vaccination stimulates integrated organ immunity by feedback of the adaptive immune response to imprint prolonged innate antiviral resistance. Nature immunology (2023)
John W Hickey, Winston R Becker, Stephanie A Nevins, Aaron Horning, Almudena Espin Perez, Chenchen Zhu, Bokai Zhu, Bei Wei, Roxanne Chiu, Derek C Chen, Daniel L Cotter, Edward D Esplin, Annika K Weimer, Chiara Caraccio, Vishal Venkataraaman, Christian M Schürch, Sarah Black, Maria Brbic, Kaidi Cao, Shuxiao Chen, Weiruo Zhang, Emma Monte, Nancy R Zhang, Zongming Ma, Jure Leskovec, Zhengyan Zhang, Shin Lin, Teri Longacre, Sylvia K Plevritis, Yiing Lin, Garry P Nolan, William J Greenleaf, Michael Paul Snyder
Organization of the human intestine at single-cell resolution. Nature 619 (7970) (2023)
Magdalena Matusiak, John W Hickey, Bogdan Luca, Guolan Lu, Lukasz Kidzinski, Shirley Zhu, Deana Colburg, Darci J Phillips, Sky Brubaker, Gregory Charville, Jeanne Shen, Garry P Nolan, Aaron M Newman, Robert West, Matt van de Rijn
A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer. Research square (2023)
Yunhao Bai, Bokai Zhu, John-Paul Oliveria, Bryan J Cannon, Dorien Feyaerts, Marc Bosse, Kausalia Vijayaragavan, Noah F Greenwald, Darci J Phillips, Christian M Schürch, Samuel M Naik, Edward A Ganio, Brice L Gaudilliere, Scott J Rodig, Michael B Miller, R Michael Angelo, Sean C Bendall, Xavier Rovira-Clavé, Garry P Nolan, Sizun J Jiang
Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology. Nature communications 14 (1) (2023)
Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, John T Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv Sam Gambhir, William J Sandborn, Brigid S Boland, Trevor J Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan R Rogalla
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. Science advances 9 (3) (2023)
Magdalena Matusiak, John W Hickey, Bogdan Luca, Guolan Lu, Lukasz Kidzinski, Shirley Zhu, Deana Colburg, Darci J Phillips, Sky Brubaker, Gregory Charville, Jeanne Shen, Garry P Nolan, Aaron M Newman, Robert West, Matt van de Rijn
A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer. Research square (2023)
Yury Goltsev, Garry P Nolan
CODEX multiplexed tissue imaging. Nature reviews. Immunology (2023)
Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, John T Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv Sam Gambhir, William J Sandborn, Brigid S Boland, Trevor J Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan R Rogalla
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy. Science advances 9 (3) (2023)
Maria Brbic, Kaidi Cao, John W Hickey, Yuqi Tan, Michael Paul Snyder, Garry P Nolan, Jure Leskovec
Annotation of spatially resolved single-cell data with STELLAR. Nature methods 19 (11) (2022)
Michael Y Lee, Jacob S Bedia, Salil S Bhate, Graham L Barlow, Darci J Phillips, Wendy J Fantl, Garry P Nolan, Christian M Schürch
CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images. BMC bioinformatics 23 (1) (2022)
Giovanny J Martínez-Colón, Kalani Ratnasiri, Heping Chen, Sizun J Jiang, Elizabeth Zanley, Arjun Rustagi, Renu Verma, Han Chen, Jason R Andrews, Kirsten D Mertz, Alexandar Tzankov, Dan Azagury, Jack H Boyd, Garry P Nolan, Christian M Schürch, Matthias S Matter, Catherine A Blish, Tracey L McLaughlin
SARS-CoV-2 infection drives an inflammatory response in human adipose tissue through infection of adipocytes and macrophages. Science translational medicine 14 (674) (2022)
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