David D L Minh (Stanley Nicholson)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 32

Top Topics

Respiratory Syndrome Coronavirus

Molecular Dynamics

Top Venues

Journal of chemical information and modeling

Journal of computational chemistry

Journal of chemical theory and computation

This page only lists publications with an associated author ORCID identifier.

Publications

Hong Ha Nguyen, Jim Tufts, David D L Minh
On Inactivation of the Coronavirus Main Protease. Journal of chemical information and modeling (2024)
Hong Ha Nguyen, Jim Tufts, David D L Minh
On Inactivation of the Coronavirus Main Protease. Journal of chemical information and modeling 64 (5) (2024)
Hong Ha Nguyen, Jim Tufts, David D L Minh
On Inactivation of the Coronavirus Main Protease. Journal of chemical information and modeling 64 (5) (2024)
Hong Ha Nguyen, Jim Tufts, David D L Minh
On Inactivation of the Coronavirus Main Protease. Journal of chemical information and modeling 64 (5) (2024)
Hong Ha Nguyen, Jim Tufts, David D L Minh
On Inactivation of the Coronavirus Main Protease. Journal of chemical information and modeling 64 (5) (2024)
Hong Ha Nguyen, Jim Tufts, David D L Minh
On Inactivation of the Coronavirus Main Protease. Journal of chemical information and modeling 64 (5) (2024)
David D L Minh, David D L Minh, Robert S Eisenberg
H-Bonds in Crambin: Coherence in an α-Helix. ACS omega 8 (15) (2023)
David D L Minh, David D L Minh, Robert S Eisenberg
H-Bonds in Crambin: Coherence in an α-Helix. ACS omega 8 (15) (2023)
David D L Minh, David D L Minh, Robert S Eisenberg
H-Bonds in Crambin: Coherence in an α-Helix. ACS omega 8 (15) (2023)
Van Ngoc Thuy La, Stanley Nicholson, Amna Haneef, Lulu Kang, David D L Minh
Inclusion of Control Data in Fits to Concentration-Response Curves Improves Estimates of Half-Maximal Concentrations. Journal of medicinal chemistry (2023)
David D L Minh, David D L Minh, Robert S Eisenberg
H-Bonds in Crambin: Coherence in an α-Helix. ACS omega 8 (15) (2023)
Van Ngoc Thuy La, David D L Minh
Bayesian Regression Quantifies Uncertainty of Binding Parameters from Isothermal Titration Calorimetry More Accurately Than Error Propagation. International journal of molecular sciences 24 (20) (2023)
Trung Hai Nguyen, Van Ngoc Thuy La, Kyle Burke, David D L Minh
Bayesian regression and model selection for isothermal titration calorimetry with enantiomeric mixtures. PloS one 17 (9) (2022)
Soohaeng Yoo Willow, Ming Yuan, Oscar Juárez, David D L Minh
Electrostatics and water occlusion regulate covalently-bound flavin mononucleotide cofactors of Vibrio cholerae respiratory complex NQR. Proteins 89 (10) (2021)
Bing Xie, Qi Yao, Jialing Xiang, David D L Minh
A Structural Model for Bax∆2-Mediated Activation of Caspase 8-Dependent Apoptosis. International journal of molecular sciences 21 (15) (2020)
Soohaeng Yoo Willow, Bing Xie, Jason Lawrence, Robert S Eisenberg, David D L Minh
On the polarization of ligands by proteins. Physical chemistry chemical physics : PCCP 22 (21) (2020)
William M Menzer, Bing Xie, David D L Minh
On Restraints in End-Point Protein-Ligand Binding Free Energy Calculations. Journal of computational chemistry 41 (6) (2019)
Trung Hai Nguyen, Van A Ngo, João Paulo Castro Zerba, Sergei Yu Noskov, David D L Minh
Nonequilibrium path-ensemble averages for symmetric protocols. The Journal of chemical physics 151 (19) (2019)
Bing Xie, John D Clark, David D L Minh
Correction to "Efficiency of Stratification for Ensemble Docking Using Reduced Ensembles". Journal of chemical information and modeling 59 (2) (2019)
Xuan Fang, Jerzy Osipiuk, Srinivas Chakravarthy, Ming Yuan, William M Menzer, Devin Nissen, Pingdong Liang, Daniel A Raba, Karina Tuz, Andrew J Howard, Andrzej Joachimiak, David D L Minh, Oscar Juarez
Conserved residue His-257 of Vibrio cholerae flavin transferase ApbE plays a critical role in substrate binding and catalysis. The Journal of biological chemistry 294 (37) (2019)
David D L Minh
Alchemical Grid Dock (AlGDock): Binding Free Energy Calculations between Flexible Ligands and Rigid Receptors. Journal of computational chemistry 41 (7) (2019)
Trung Hai Nguyen, David D L Minh
Correction to Intermediate Thermodynamic States Contribute Equally to Free Energy Convergence: A Demonstration with Replica Exchange. Journal of chemical theory and computation 14 (6) (2018)
David D L Minh
Power transformations improve interpolation of grids for molecular mechanics interaction energies. Journal of computational chemistry 39 (19) (2018)
William M Menzer, Chen Li, Wenji Sun, Bing Xie, David D L Minh
Simple Entropy Terms for End-Point Binding Free Energy Calculations. Journal of chemical theory and computation 14 (11) (2018)
Trung Hai Nguyen, Ariën S Rustenburg, Stefan G Krimmer, Hexi Zhang, John D Clark, Paul A Novick, Kim Branson, Vijay S Pande, John D Chodera, David D L Minh
Bayesian analysis of isothermal titration calorimetry for binding thermodynamics. PloS one 13 (9) (2018)
Trung Hai Nguyen, David D L Minh
Implicit ligand theory for relative binding free energies. The Journal of chemical physics 148 (10) (2018)
Bing Xie, John D Clark, David D L Minh
Efficiency of Stratification for Ensemble Docking Using Reduced Ensembles. Journal of chemical information and modeling 58 (9) (2018)
Bing Xie, David D L Minh
Alchemical Grid Dock (AlGDock) calculations in the D3R Grand Challenge 3 : Binding free energies between flexible ligands and rigid receptors. Journal of computer-aided molecular design 33 (1) (2018)
Trung Hai Nguyen, Huan-Xiang Zhou, David D L Minh
Using the fast fourier transform in binding free energy calculations. Journal of computational chemistry 39 (11) (2017)
Emre Onuk, John Badger, Yu Jing Wang, Jaydeep Bardhan, Yasmin Chishti, Murat Akcakaya, Dana H Brooks, Deniz Erdogmus, David D L Minh, Lee Makowski
Effects of Catalytic Action and Ligand Binding on Conformational Ensembles of Adenylate Kinase. Biochemistry 56 (34) (2017)
Bing Xie, Trung Hai Nguyen, David D L Minh
Absolute Binding Free Energies between T4 Lysozyme and 141 Small Molecules: Calculations Based on Multiple Rigid Receptor Configurations. Journal of chemical theory and computation 13 (6) (2017)
Laurentiu Spiridon, David D L Minh
Hamiltonian Monte Carlo with Constrained Molecular Dynamics as Gibbs Sampling. Journal of chemical theory and computation 13 (10) (2017)