David Edward Cook (David Cook, David E Cook)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 16

Top Venues

Nature communications

NAR genomics and bioinformatics

PLoS genetics

eLife

Kansas State University

University of Wisconsin Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Kansas State University

United States

Assistant Professor :: Plant Pathology

Education History

University of Wisconsin Madison

United States

PHD :: Plant Pathology

Virginia Polytechnic Institute and State University

United States

MSC :: Crop and Soil Environmental Sciences

Publications

David E Torres, H Martin Kramer, Vittorio Tracanna, Gabriel L Fiorin, David Edward Cook, Michael F Seidl, Bart P H J Thomma
Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen. Nature communications 15 (1) (2024)
David E Torres, H Martin Kramer, Vittorio Tracanna, Gabriel L Fiorin, David Edward Cook, Michael F Seidl, Bart P H J Thomma
Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen. Nature communications 15 (1) (2024)
David E Torres, H Martin Kramer, Vittorio Tracanna, Gabriel L Fiorin, David Edward Cook, Michael F Seidl, Bart P H J Thomma
Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen. Nature communications 15 (1) (2024)
Nikesh Gyawali, Yangfan Hao, Guifang Lin, Jun Huang, Ravi Bika, Lidia Calderon Daza, Huakun Zheng, Giovana Cruppe, Doina Caragea, David Edward Cook, Barbara Valent, Sanzhen Liu
Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases. NAR genomics and bioinformatics 6 (3) (2024)
Nikesh Gyawali, Yangfan Hao, Guifang Lin, Jun Huang, Ravi Bika, Lidia Calderon Daza, Huakun Zheng, Giovana Cruppe, Doina Caragea, David Edward Cook, Barbara Valent, Sanzhen Liu
Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases. NAR genomics and bioinformatics 6 (3) (2024)
Sanzhen Liu, Guifang Lin, Sowmya R Ramachandran, Lidia Calderon Daza, Giovana Cruppe, Batiseba Tembo, Pawan Kumar Singh, David Edward Cook, Kerry F Pedley, Barbara Valent
Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia. The New phytologist (2023)
H Martin Kramer, Michael F Seidl, Bart P H J Thomma, David Edward Cook
Local Rather than Global H3K27me3 Dynamics Are Associated with Differential Gene Expression in Verticillium dahliae. mBio (2022)
Jun Huang, David Edward Cook
The contribution of DNA repair pathways to genome editing and evolution in filamentous pathogens. FEMS microbiology reviews (2022)
Veerendra Kumar Sharma, Sandeep Marla, Wenguang Zheng, Divya Mishra, Jun Huang, Wei Zhang, Geoffrey Preston Morris, David Edward Cook
CRISPR guides induce gene silencing in plants in the absence of Cas. Genome biology 23 (1) (2022)
Jun Huang, David Rowe, Pratima Subedi, Wei Zhang, Tyler Suelter, Barbara Valent, David Edward Cook
CRISPR-Cas12a induced DNA double-strand breaks are repaired by multiple pathways with different mutation profiles in Magnaporthe oryzae. Nature communications 13 (1) (2022)
Wei Zhang, Jun Huang, David Edward Cook
Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae. PLoS genetics 17 (2) (2021)
John J Weiland, Roshan Sharma Poudel, Alyssa Flobinus, David Edward Cook, Gary A Secor, Melvin D Bolton
RNAseq Analysis of Rhizomania-Infected Sugar Beet Provides the First Genome Sequence of Beet Necrotic Yellow Vein Virus from the USA and Identifies a Novel Alphanecrovirus and Putative Satellite Viruses. Viruses 12 (6) (2020)
David Edward Cook, H Martin Kramer, David E Torres, Michael F Seidl, Bart P H J Thomma
A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen. eLife 9 (2020)
Zhao Peng, Ely Oliveira-Garcia, Guifang Lin, Ying Hu, Melinda Dalby, Pierre Migeon, Haibao Tang, Mark Farman, David Edward Cook, Frank F White, Barbara Valent, Sanzhen Liu
Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus. PLoS genetics 15 (9) (2019)
Wei Zhang, Jason A Corwin, Daniel Harrison Copeland, Julie Feusier, Robert Eshbaugh, David Edward Cook, Suzi Atwell, Daniel J Kliebenstein
Plant-necrotroph co-transcriptome networks illuminate a metabolic battlefield. eLife 8 (2019)
David Edward Cook, Jose Espejo Valle-Inclan, Alice Pajoro, Hanna Rovenich, Bart P H J Thomma, Luigi Faino
Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing. Plant physiology 179 (1) (2018)

David Edward Cook.css-eqlu8i{font-size:small;padding-left:4px;} (David Cook, David E Cook)

Publication Activity (10 Years)

Top Topics

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David Edward Cook (David Cook, David E Cook)