PLoS genetics

Keyphrases

Publications

volume 20, number 8, 2024

Bayram Cevdet Akdeniz, Oleksandr Frei, Alexey Shadrin, Dmitry Vetrov, Dmitry Kropotov, Eivind Hovig, Ole Andreas Andreassen, Anders M Dale
Finemap-MiXeR: A variational Bayesian approach for genetic finemapping. PLoS genetics 20 (8) (2024)
Claire E McCarthy-Leo, George S Brush, Roger Pique-Regi, Francesca Luca, Michael A Tainsky, Russell L Finley
Comprehensive analysis of the functional impact of single nucleotide variants of human CHEK2. PLoS genetics 20 (8) (2024)
Bayram Cevdet Akdeniz, Oleksandr Frei, Alexey Shadrin, Dmitry Vetrov, Dmitry Kropotov, Eivind Hovig, Ole Andreas Andreassen, Anders M Dale
Finemap-MiXeR: A variational Bayesian approach for genetic finemapping. PLoS genetics 20 (8) (2024)
Shaonil Binti, Adison G Linder, Phillip T Edeen, David S Fay
A conserved protein tyrosine phosphatase, PTPN-22, functions in diverse developmental processes in C. elegans. PLoS genetics 20 (8) (2024)
Yusaku Sugimura, Kaori Oikawa, Yu Sugihara, Hiroe Utsushi, Eiko Kanzaki, Kazue Ito, Yumiko Ogasawara, Tomoaki Fujioka, Hiroki Takagi, Motoki Shimizu, Hiroyuki Shimono, Ryohei Terauchi, Akira Abe
Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding. PLoS genetics 20 (8) (2024)
Shaonil Binti, Adison G Linder, Phillip T Edeen, David S Fay
A conserved protein tyrosine phosphatase, PTPN-22, functions in diverse developmental processes in C. elegans. PLoS genetics 20 (8) (2024)
Yusaku Sugimura, Kaori Oikawa, Yu Sugihara, Hiroe Utsushi, Eiko Kanzaki, Kazue Ito, Yumiko Ogasawara, Tomoaki Fujioka, Hiroki Takagi, Motoki Shimizu, Hiroyuki Shimono, Ryohei Terauchi, Akira Abe
Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding. PLoS genetics 20 (8) (2024)
Claire E McCarthy-Leo, George S Brush, Roger Pique-Regi, Francesca Luca, Michael A Tainsky, Russell L Finley
Comprehensive analysis of the functional impact of single nucleotide variants of human CHEK2. PLoS genetics 20 (8) (2024)
Eshna Jash, Anati Alyaa Azhar, Hector Mendoza, Zoey M Tan, Halle Nicole Escher, Dalia S Kaufman, Györgyi Csankovszki
XOL-1 regulates developmental timing by modulating the H3K9 landscape in C. elegans early embryos. PLoS genetics 20 (8) (2024)
Eshna Jash, Anati Alyaa Azhar, Hector Mendoza, Zoey M Tan, Halle Nicole Escher, Dalia S Kaufman, Györgyi Csankovszki
XOL-1 regulates developmental timing by modulating the H3K9 landscape in C. elegans early embryos. PLoS genetics 20 (8) (2024)
Andrea E Belleville, James D Thomas, Jackson Tonnies, Austin M Gabel, Andrea Borrero Rossi, Priti Singh, Christine Queitsch, Robert K Bradley
An autoregulatory poison exon in Smndc1 is conserved across kingdoms and influences organism growth. PLoS genetics 20 (8) (2024)
Zhengyang Guo, Shimin Wang, Yang Wang, Zi Wang, Guangshuo Ou
A machine learning enhanced EMS mutagenesis probability map for efficient identification of causal mutations in Caenorhabditis elegans. PLoS genetics 20 (8) (2024)
James I Hertzler, Jiajing Teng, Annabelle R Bernard, Michelle C Stone, Hannah L Kline, Gibarni Mahata, Nitish Kumar, Melissa M Rolls
Voltage-gated calcium channels act upstream of adenylyl cyclase Ac78C to promote timely initiation of dendrite regeneration. PLoS genetics 20 (8) (2024)
Maikel Acosta-Zaldívar, Wanjun Qi, Abhishek Mishra, Udita Roy, William R King, Yuping Li, Jana Patton-Vogt, Matthew Zack Anderson, Julia R Köhler
Candida albicans' inorganic phosphate transport and evolutionary adaptation to phosphate scarcity. PLoS genetics 20 (8) (2024)
Eshna Jash, Anati Alyaa Azhar, Hector Mendoza, Zoey M Tan, Halle Nicole Escher, Dalia S Kaufman, Györgyi Csankovszki
XOL-1 regulates developmental timing by modulating the H3K9 landscape in C. elegans early embryos. PLoS genetics 20 (8) (2024)
Maikel Acosta-Zaldívar, Wanjun Qi, Abhishek Mishra, Udita Roy, William R King, Yuping Li, Jana Patton-Vogt, Matthew Zack Anderson, Julia R Köhler
Candida albicans' inorganic phosphate transport and evolutionary adaptation to phosphate scarcity. PLoS genetics 20 (8) (2024)
Elsie H Shogren, Jason M Sardell, Christina A Muirhead, Emiliano Martí, Elizabeth A Cooper, Robert G Moyle, Daven C Presgraves, J Albert C Uy
Recent secondary contact, genome-wide admixture, and asymmetric introgression of neo-sex chromosomes between two Pacific island bird species. PLoS genetics 20 (8) (2024)
Yusaku Sugimura, Kaori Oikawa, Yu Sugihara, Hiroe Utsushi, Eiko Kanzaki, Kazue Ito, Yumiko Ogasawara, Tomoaki Fujioka, Hiroki Takagi, Motoki Shimizu, Hiroyuki Shimono, Ryohei Terauchi, Akira Abe
Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding. PLoS genetics 20 (8) (2024)
Elsie H Shogren, Jason M Sardell, Christina A Muirhead, Emiliano Martí, Elizabeth A Cooper, Robert G Moyle, Daven C Presgraves, J Albert C Uy
Recent secondary contact, genome-wide admixture, and asymmetric introgression of neo-sex chromosomes between two Pacific island bird species. PLoS genetics 20 (8) (2024)
Aravindh Nagarajan, Kristin Scoggin, Leslie G Adams, David Threadgill, Helene L Andrews-Polymenis
Identification of a genetic region linked to tolerance to MRSA infection using Collaborative Cross mice. PLoS genetics 20 (8) (2024)
Shaonil Binti, Adison G Linder, Phillip T Edeen, David S Fay
A conserved protein tyrosine phosphatase, PTPN-22, functions in diverse developmental processes in C. elegans. PLoS genetics 20 (8) (2024)
Bradley Crone, Alan P Boyle
Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integration. PLoS genetics 20 (8) (2024)
Maikel Acosta-Zaldívar, Wanjun Qi, Abhishek Mishra, Udita Roy, William R King, Yuping Li, Jana Patton-Vogt, Matthew Zack Anderson, Julia R Köhler
Candida albicans' inorganic phosphate transport and evolutionary adaptation to phosphate scarcity. PLoS genetics 20 (8) (2024)
Bradley Crone, Alan P Boyle
Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integration. PLoS genetics 20 (8) (2024)
Mushaine Shih, Yan Zou, Tarsis Ferreira, Nobuko Suzuki, Eunseo Kim, Chiou-Fen Chuang, Chieh Chang
The kpc-1 3'UTR facilitates dendritic transport and translation efficiency of mRNAs for dendrite arborization of a mechanosensory neuron important for male courtship. PLoS genetics 20 (8) (2024)
Andrea E Belleville, James D Thomas, Jackson Tonnies, Austin M Gabel, Andrea Borrero Rossi, Priti Singh, Christine Queitsch, Robert K Bradley
An autoregulatory poison exon in Smndc1 is conserved across kingdoms and influences organism growth. PLoS genetics 20 (8) (2024)
Andrea E Belleville, James D Thomas, Jackson Tonnies, Austin M Gabel, Andrea Borrero Rossi, Priti Singh, Christine Queitsch, Robert K Bradley
An autoregulatory poison exon in Smndc1 is conserved across kingdoms and influences organism growth. PLoS genetics 20 (8) (2024)
Amanda Glaser-Schmitt, Marion Lemoine, Martin Kaltenpoth, John Parsch
Pervasive tissue-, genetic background-, and allele-specific gene expression effects in Drosophila melanogaster. PLoS genetics 20 (8) (2024)
Mushaine Shih, Yan Zou, Tarsis Ferreira, Nobuko Suzuki, Eunseo Kim, Chiou-Fen Chuang, Chieh Chang
The kpc-1 3'UTR facilitates dendritic transport and translation efficiency of mRNAs for dendrite arborization of a mechanosensory neuron important for male courtship. PLoS genetics 20 (8) (2024)
Bradley Crone, Alan P Boyle
Enhancing portability of trans-ancestral polygenic risk scores through tissue-specific functional genomic data integration. PLoS genetics 20 (8) (2024)

volume 20, number 9, 2024

Cassandra Schaening-Burgos, Hannah LeBlanc, Christian Fagre, Gene-Wei Li, Wendy V Gilbert
RluA is the major mRNA pseudouridine synthase in Escherichia coli. PLoS genetics 20 (9) (2024)
Jonathan Plessis-Belair, Kathryn Ravano, Ellen Han, Aubrey Janniello, Catalina Molina, Roger B Sher
NEMF mutations in mice illustrate how Importin-β specific nuclear transport defects recapitulate neurodegenerative disease hallmarks. PLoS genetics 20 (9) (2024)
Yohan Frei, Clément Immarigeon, Maxime Revel, François Karch, Robert K Maeda
Upstream open reading frames repress the translation from the iab-8 RNA. PLoS genetics 20 (9) (2024)
Nitin Kumar, Min-Lee Yang, Pengfei Sun, Kristina L Hunker, Jianping Li, Jia Jia, Fangfang Fan, Jinghua Wang, Xianjia Ning, Wei Gao, Ming Xu, Jifeng Zhang, Lin Chang, Yuqing E Chen, Yong Huo, Yan Zhang, Santhi K Ganesh
Genetic variation in CCDC93 is associated with elevated central systolic blood pressure, impaired arterial relaxation, and mitochondrial dysfunction. PLoS genetics 20 (9) (2024)
Parvathy Ramesh, Satish Kumar Tiwari, Md Kaizer, Deepak Jangra, Kaustuv Ghosh, Sudip Mandal, Lolitika Mandal
The NF-κB Factor Relish maintains blood progenitor homeostasis in the developing Drosophila lymph gland. PLoS genetics 20 (9) (2024)
Isaac Gifford, Gabriel A Suárez, Jeffrey E Barrick
Evolution recovers the fitness of Acinetobacter baylyi strains with large deletions through mutations in deletion-specific targets and global post-transcriptional regulators. PLoS genetics 20 (9) (2024)
Ke-Yan Jin, Xiao-Pei Wang, Yu-Qin Di, Yu-Meng Zhao, Jin-Xing Wang, Xiao-Fan Zhao
The transcription factor RUNT-like regulates pupal cuticle development via promoting a pupal cuticle protein transcription. PLoS genetics 20 (9) (2024)
Ching-Yi Huang, Yu-Seng Huang, Yu Sugihara, Hung-Yu Wang, Lo-Ting Huang, Juan Carlos Lopez-Agudelo, Yi-Feng Chen, Kuan-Yu Lin, Bing-Jen Chiang, AmirAli Toghani, Jiorgos Kourelis, Chun-Hsiung Wang, Lida Derevnina, Chih-Hang Wu
Subfunctionalization of NRC3 altered the genetic structure of the Nicotiana NRC network. PLoS genetics 20 (9) (2024)
Holly J Thorpe, Raghavendran Partha, Jordan Little, Nathan L Clark, Clement Y Chow
Evolutionary rate covariation is pervasive between glycosylation pathways and points to potential disease modifiers. PLoS genetics 20 (9) (2024)
Hélène Gaillard, Toni Ciudad, Andrés Aguilera, Ralf Erik Wellinger
Histone variant H2A.Z is needed for efficient transcription-coupled NER and genome integrity in UV challenged yeast cells. PLoS genetics 20 (9) (2024)
Amber R Matha, Xiaofeng Xie, Robert J Maier, Xiaorong Lin
Nickel tolerance is channeled through C-4 methyl sterol oxidase Erg25 in the sterol biosynthesis pathway. PLoS genetics 20 (9) (2024)
Kotchaphorn Mangkalaphiban, Robin Ganesan, Allan Jacobson
Pleiotropic effects of PAB1 deletion: Extensive changes in the yeast proteome, transcriptome, and translatome. PLoS genetics 20 (9) (2024)
Deema Ali, Aodán Laighneach, Emma Corley, Saahithh Redddi Patlola, Rebecca Mahoney, Laurena Holleran, Declan P McKernan, John P Kelly, Aiden P Corvin, Brian Hallahan, Colm McDonald, Gary Donohoe, Derek W Morris
Direct targets of MEF2C are enriched for genes associated with schizophrenia and cognitive function and are involved in neuron development and mitochondrial function. PLoS genetics 20 (9) (2024)
Ruxin Shi, Ling Wang, Stephen Burgess, Yuehua Cui
MR-SPLIT: A novel method to address selection and weak instrument bias in one-sample Mendelian randomization studies. PLoS genetics 20 (9) (2024)
Yi-Ting Huang, Lauren L Hesting, Brian R Calvi
An unscheduled switch to endocycles induces a reversible senescent arrest that impairs growth of the Drosophila wing disc. PLoS genetics 20 (9) (2024)
Chao Wei, Xiaoyuan Yan, Jeffrey M Mann, Ruirong Geng, Qianyi Wang, Huirong Xie, Elena Y Demireva, Liangliang Sun, Deqiang Ding, Chen Chen
PNLDC1 catalysis and postnatal germline function are required for piRNA trimming, LINE1 silencing, and spermatogenesis in mice. PLoS genetics 20 (9) (2024)
Christopher C Kyriazis, Kirk E Lohmueller
Constraining models of dominance for nonsynonymous mutations in the human genome. PLoS genetics 20 (9) (2024)
Tomas A Peña, Pablo Villarreal, Nicolas Agier, Matteo De Chiara, Tomas Barría, Kamila Urbina, Carlos A Villarroel, Ana Raquel O Santos, Carlos A Rosa, Roberto F Nespolo, Gianni Liti, Gilles Fischer, Francisco A Cubillos
An integrative taxonomy approach reveals Saccharomyces chiloensis sp. nov. as a newly discovered species from Coastal Patagonia. PLoS genetics 20 (9) (2024)
Nadiia Pozhydaieva, Franziska Anna Billau, Maik Wolfram-Schauerte, Adán Andrés Ramírez Rojas, Nicole Paczia, Daniel Schindler, Katharina Höfer
Temporal epigenome modulation enables efficient bacteriophage engineering and functional analysis of phage DNA modifications. PLoS genetics 20 (9) (2024)
Emily R Czajkowski, Yuntong Zou, Nikita S Divekar, Sarah M Wignall
The doublecortin-family kinase ZYG-8DCLK1 regulates microtubule dynamics and motor-driven forces to promote the stability of C. elegans acentrosomal spindles. PLoS genetics 20 (9) (2024)