David J Degnan

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 26

Top Topics

Mass Spectrometry

Quality Control

Top Venues

Journal of proteome research

bioRxiv : the preprint server for biology

Journal of the American Society for Mass Spectrometry

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Kevin J Zemaitis, James M Fulcher, Rashmi Kumar, David J Degnan, Logan A Lewis, Yen-Chen Liao, Marija Veličković, Sarah M Williams, Ronald J Moore, Lisa M Bramer, Dušan Veličković, Ying Zhu, Mowei Zhou, Ljiljana Pasa-Tolic
Spatial top-down proteomics for the functional characterization of human kidney. bioRxiv : the preprint server for biology (2024)
Kevin J Zemaitis, James M Fulcher, Rashmi Kumar, David J Degnan, Logan A Lewis, Yen-Chen Liao, Marija Veličković, Sarah M Williams, Ronald J Moore, Lisa M Bramer, Dušan Veličković, Ying Zhu, Mowei Zhou, Ljiljana Pasa-Tolic
Spatial top-down proteomics for the functional characterization of human kidney. bioRxiv : the preprint server for biology (2024)
Kevin J Zemaitis, James M Fulcher, Rashmi Kumar, David J Degnan, Logan A Lewis, Yen-Chen Liao, Marija Veličković, Sarah M Williams, Ronald J Moore, Lisa M Bramer, Dušan Veličković, Ying Zhu, Mowei Zhou, Ljiljana Pasa-Tolic
Spatial top-down proteomics for the functional characterization of human kidney. bioRxiv : the preprint server for biology (2024)
David J Degnan, Logan A Lewis, Lisa M Bramer, Lee Ann McCue, James J Pesavento, Mowei Zhou, Aivett Bilbao
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data. Journal of proteome research (2024)
Kevin J Zemaitis, James M Fulcher, Rashmi Kumar, David J Degnan, Logan A Lewis, Yen-Chen Liao, Marija Veličković, Sarah M Williams, Ronald J Moore, Lisa M Bramer, Dušan Veličković, Ying Zhu, Mowei Zhou, Ljiljana Pasa-Tolic
Spatial top-down proteomics for the functional characterization of human kidney. bioRxiv : the preprint server for biology (2024)
David J Degnan, Logan A Lewis, Lisa M Bramer, Lee Ann McCue, James J Pesavento, Mowei Zhou, Aivett Bilbao
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data. Journal of proteome research 23 (8) (2024)
Kevin J Zemaitis, James M Fulcher, Rashmi Kumar, David J Degnan, Logan A Lewis, Yen-Chen Liao, Marija Veličković, Sarah M Williams, Ronald J Moore, Lisa M Bramer, Dušan Veličković, Ying Zhu, Mowei Zhou, Ljiljana Pasa-Tolic
Spatial top-down proteomics for the functional characterization of human kidney. bioRxiv : the preprint server for biology (2024)
David J Degnan, Logan A Lewis, Lisa M Bramer, Lee Ann McCue, James J Pesavento, Mowei Zhou, Aivett Bilbao
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data. Journal of proteome research 23 (8) (2024)
David J Degnan, Kelly G Stratton, Rachel Richardson, Daniel M Claborne, Evan A Martin, Nathan A Johnson, Damon Leach, Bobbie-Jo M Webb-Robertson, Lisa M Bramer
pmartR 2.0 : A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes. Journal of proteome research 22 (2) (2023)
Javier E Flores, Lisa M Bramer, David J Degnan, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics. Journal of the American Society for Mass Spectrometry (2023)
David J Degnan, Kelly G Stratton, Rachel Richardson, Daniel M Claborne, Evan A Martin, Nathan A Johnson, Damon Leach, Bobbie-Jo M Webb-Robertson, Lisa M Bramer
pmartR 2.0 : A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes. Journal of proteome research 22 (2) (2023)
David J Degnan, Lisa M Bramer, Javier E Flores, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification. Analytical chemistry (2023)
Javier E Flores, Lisa M Bramer, David J Degnan, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics. Journal of the American Society for Mass Spectrometry (2023)
David J Degnan, Kevin J Zemaitis, Logan A Lewis, Lee Ann McCue, Lisa M Bramer, James M Fulcher, Dušan Veličković, Ljiljana Paša-Tolić, Mowei Zhou
IsoMatchMS : Open-Source Software for Automated Annotation and Visualization of High Resolution MALDI-MS Spectra. Journal of the American Society for Mass Spectrometry (2023)
David J Degnan, Lisa M Bramer, Javier E Flores, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification. Analytical chemistry 95 (19) (2023)
Javier E Flores, Lisa M Bramer, David J Degnan, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics. Journal of the American Society for Mass Spectrometry (2023)
David J Degnan, Kelly G Stratton, Rachel Richardson, Daniel M Claborne, Evan A Martin, Nathan A Johnson, Damon Leach, Bobbie-Jo M Webb-Robertson, Lisa M Bramer
pmartR 2.0 : A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes. Journal of proteome research (2023)
David J Degnan, Javier E Flores, Eva R Brayfindley, Vanessa L Paurus, Bobbie-Jo M Webb-Robertson, Chaevien S Clendinen, Lisa M Bramer
Characterizing Families of Spectral Similarity Scores and Their Use Cases for Gas Chromatography-Mass Spectrometry Small Molecule Identification. Metabolites 13 (10) (2023)
David J Degnan, Lisa M Bramer, Javier E Flores, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification. Analytical chemistry 95 (19) (2023)
Lisa M Bramer, Holly M Dixon, David J Degnan, Diana Rohlman, Julie B Herbstman, Kim A Anderson, Katrina M Waters
Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration. bioRxiv : the preprint server for biology (2023)
David J Degnan, Kelly G Stratton, Rachel Richardson, Daniel M Claborne, Evan A Martin, Nathan A Johnson, Damon Leach, Bobbie-Jo M Webb-Robertson, Lisa M Bramer
pmartR 2.0 : A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes. Journal of proteome research 22 (2) (2023)
Javier E Flores, Lisa M Bramer, David J Degnan, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics. Journal of the American Society for Mass Spectrometry (2023)
Kelly G Stratton, Daniel M Claborne, David J Degnan, Rachel E Richardson, Amanda M White, Lee Ann McCue, Bobbie-Jo M Webb-Robertson, Lisa M Bramer
PMart Web Application: Marketplace for Interactive Analysis of Panomics Data. Journal of proteome research (2023)
David J Degnan, Lisa M Bramer, Javier E Flores, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification. Analytical chemistry 95 (19) (2023)
Javier E Flores, Lisa M Bramer, David J Degnan, Vanessa L Paurus, Yuri E Corilo, Chaevien S Clendinen
Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics. Journal of the American Society for Mass Spectrometry (2023)
David J Degnan, Lisa M Bramer, Amanda M White, Mowei Zhou, Aivett Bilbao, Lee Ann McCue
PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R. Journal of proteome research 20 (4) (2021)