Aivett Bilbao

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Venues

Journal of the American Society for Mass Spectrometry

Journal of proteome research

Nature communications

Nature chemical biology

University of Geneva (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

University of Geneva Nov 01 2011 - Dec 09 2015

Switzerland

PHD

Publications

Dylan H Ross, Harsh Bhotika, Xueyun Zheng, Richard D Smith, Kristin E Burnum-Johnson, Aivett Bilbao
Computational tools and algorithms for ion mobility spectrometry-mass spectrometry. Proteomics (2024)
Andrea Harrison, Josie G Eder, Priscila M Lalli, Nathalie Munoz, Yuqian Gao, Chaevien S Clendinen, Daniel J Orton, Xueyun Zheng, Sarah M Williams, Sneha P Couvillion, Rosalie K Chu, Vimal K Balasubramanian, Arunima Bhattacharjee, Christopher R Anderton, Kyle R Pomraning, Kristin E Burnum-Johnson, Tao Liu, Jennifer E Kyle, Aivett Bilbao
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data. Journal of the American Society for Mass Spectrometry (2024)
Dylan H Ross, Jung Yun Lee, Yuqian Gao, Adam L Hollerbach, Aivett Bilbao, Tujin Shi, Helen S C Lazzarin, Richard D Smith, Xueyun Zheng
Evaluation of a Reference-Free Collision Cross Section Calibration Strategy for Proteomics Using SLIM-Based High-Resolution Ion Mobility Spectrometry-Mass Spectrometry. Journal of the American Society for Mass Spectrometry (2024)
Dylan H Ross, Harsh Bhotika, Xueyun Zheng, Richard D Smith, Kristin E Burnum-Johnson, Aivett Bilbao
Computational tools and algorithms for ion mobility spectrometry-mass spectrometry. Proteomics 24 (12-13) (2024)
David J Degnan, Logan A Lewis, Lisa M Bramer, Lee Ann McCue, James J Pesavento, Mowei Zhou, Aivett Bilbao
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data. Journal of proteome research (2024)
Sarah M Stow, Bryson C Gibbons, Leonard C Rorrer Iii, Lauren Royer, Rebecca S Glaskin, Gordon W Slysz, Ruwan T Kurulugama, John C Fjeldsted, Daniel DeBord, Aivett Bilbao
Exploring Ion Mobility Mass Spectrometry Data File Conversions to Leverage Existing Tools and Enable New Workflows. Journal of the American Society for Mass Spectrometry (2024)
Marija Veličković, Ruonan Wu, Yuqian Gao, Margaret W Thairu, Dušan Veličković, Nathalie Munoz Munoz, Chaevien S Clendinen, Aivett Bilbao, Rosalie K Chu, Priscila M Lalli, Kevin Zemaitis, Carrie D Nicora, Jennifer E Kyle, Daniel J Orton, Sarai Williams, Ying Zhu, Rui Zhao, Matthew E Monroe, Ronald J Moore, Bobbie-Jo M Webb-Robertson, Lisa M Bramer, Cameron R Currie, Paul D Piehowski, Kristin E Burnum-Johnson
Mapping microhabitats of lignocellulose decomposition by a microbial consortium. Nature chemical biology 20 (8) (2024)
David J Degnan, Logan A Lewis, Lisa M Bramer, Lee Ann McCue, James J Pesavento, Mowei Zhou, Aivett Bilbao
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data. Journal of proteome research 23 (8) (2024)
Dylan H Ross, Jung Yun Lee, Yuqian Gao, Adam L Hollerbach, Aivett Bilbao, Tujin Shi, Helen S C Lazzarin, Richard D Smith, Xueyun Zheng
Evaluation of a Reference-Free Collision Cross Section Calibration Strategy for Proteomics Using SLIM-Based High-Resolution Ion Mobility Spectrometry-Mass Spectrometry. Journal of the American Society for Mass Spectrometry 35 (7) (2024)
Marija Veličković, Ruonan Wu, Yuqian Gao, Margaret W Thairu, Dušan Veličković, Nathalie Munoz Munoz, Chaevien S Clendinen, Aivett Bilbao, Rosalie K Chu, Priscila M Lalli, Kevin Zemaitis, Carrie D Nicora, Jennifer E Kyle, Daniel J Orton, Sarai Williams, Ying Zhu, Rui Zhao, Matthew E Monroe, Ronald J Moore, Bobbie-Jo M Webb-Robertson, Lisa M Bramer, Cameron R Currie, Paul D Piehowski, Kristin E Burnum-Johnson
Mapping microhabitats of lignocellulose decomposition by a microbial consortium. Nature chemical biology 20 (8) (2024)
Andrea Harrison, Josie G Eder, Priscila M Lalli, Nathalie Munoz, Yuqian Gao, Chaevien S Clendinen, Daniel J Orton, Xueyun Zheng, Sarah M Williams, Sneha P Couvillion, Rosalie K Chu, Vimal K Balasubramanian, Arunima Bhattacharjee, Christopher R Anderton, Kyle R Pomraning, Kristin E Burnum-Johnson, Tao Liu, Jennifer E Kyle, Aivett Bilbao
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data. Journal of the American Society for Mass Spectrometry (2024)
Marija Veličković, Ruonan Wu, Yuqian Gao, Margaret W Thairu, Dušan Veličković, Nathalie Munoz Munoz, Chaevien S Clendinen, Aivett Bilbao, Rosalie K Chu, Priscila M Lalli, Kevin Zemaitis, Carrie D Nicora, Jennifer E Kyle, Daniel J Orton, Sarai Williams, Ying Zhu, Rui Zhao, Matthew E Monroe, Ronald J Moore, Bobbie-Jo M Webb-Robertson, Lisa M Bramer, Cameron R Currie, Paul D Piehowski, Kristin E Burnum-Johnson
Mapping microhabitats of lignocellulose decomposition by a microbial consortium. Nature chemical biology 20 (8) (2024)
Sarah M Stow, Bryson C Gibbons, Leonard C Rorrer Iii, Lauren Royer, Rebecca S Glaskin, Gordon W Slysz, Ruwan T Kurulugama, John C Fjeldsted, Daniel DeBord, Aivett Bilbao
Exploring Ion Mobility Mass Spectrometry Data File Conversions to Leverage Existing Tools and Enable New Workflows. Journal of the American Society for Mass Spectrometry 35 (8) (2024)
Marija Veličković, Ruonan Wu, Yuqian Gao, Margaret W Thairu, Dušan Veličković, Nathalie Munoz Munoz, Chaevien S Clendinen, Aivett Bilbao, Rosalie K Chu, Priscila M Lalli, Kevin Zemaitis, Carrie D Nicora, Jennifer E Kyle, Daniel J Orton, Sarai Williams, Ying Zhu, Rui Zhao, Matthew E Monroe, Ronald J Moore, Bobbie-Jo M Webb-Robertson, Lisa M Bramer, Cameron R Currie, Paul D Piehowski, Kristin E Burnum-Johnson
Mapping microhabitats of lignocellulose decomposition by a microbial consortium. Nature chemical biology (2024)
Dylan H Ross, Harsh Bhotika, Xueyun Zheng, Richard D Smith, Kristin E Burnum-Johnson, Aivett Bilbao
Computational tools and algorithms for ion mobility spectrometry-mass spectrometry. Proteomics 24 (12-13) (2024)
David J Degnan, Logan A Lewis, Lisa M Bramer, Lee Ann McCue, James J Pesavento, Mowei Zhou, Aivett Bilbao
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data. Journal of proteome research 23 (8) (2024)
Aivett Bilbao, Nathalie Munoz Munoz, Joonhoon Kim, Daniel J Orton, Yuqian Gao, Kunal Poorey, Kyle R Pomraning, Karl Weitz, Meagan Burnet, Carrie D Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D Smith, Joshua K Michener, John M Gladden, Erin S Baker, Christopher J Petzold, Young-Mo Kim, Alex Apffel, John M Gladden, Kristin E Burnum-Johnson
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature communications 14 (1) (2023)
Aivett Bilbao, Nathalie Munoz Munoz, Joonhoon Kim, Daniel J Orton, Yuqian Gao, Kunal Poorey, Kyle R Pomraning, Karl Weitz, Meagan Burnet, Carrie D Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D Smith, Joshua K Michener, John M Gladden, Erin S Baker, Christopher J Petzold, Young-Mo Kim, Alex Apffel, John M Gladden, Kristin E Burnum-Johnson
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature communications 14 (1) (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Christopher R Baker, Dhruv Patel-Tupper, Benjamin J Cole, Lindsey G Ching, Oliver Dautermann, Armen C Kelikian, Cayci Allison, Julie Pedraza, Julie Sievert, Aivett Bilbao, Joon-Yong Lee, Young-Mo Kim, Jennifer E Kyle, Kent J Bloodsworth, Vanessa Paurus, Kim K Hixson, Robert Hutmacher, Jeffery A Dahlberg, Peggy G Lemaux, Krishna K Niyogi
Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum. Plant direct 7 (11) (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Dylan Ross, Aivett Bilbao, Joon-Yong Lee, Xueyun Zheng
mzapy : An Open-Source Python Library Enabling Efficient Extraction and Processing of Ion Mobility Spectrometry-Mass Spectrometry Data in the MZA File Format. Analytical chemistry (2023)
Dylan H Ross, Joon-Yong Lee, Aivett Bilbao, Daniel J Orton, Josie G Eder, Meagan C Burnet, Brooke L Deatherage Kaiser, Jennifer E Kyle, Xueyun Zheng
LipidOz enables automated elucidation of lipid carbon-carbon double bond positions from ozone-induced dissociation mass spectrometry data. Communications chemistry 6 (1) (2023)
Robin Schmid, Steffen Heuckeroth, Ansgar Korf, Aleksandr Smirnov, Owen Myers, Thomas S Dyrlund, Roman Bushuiev, Kevin J Murray, Nils Hoffmann, Miaoshan Lu, Abinesh Sarvepalli, Zheng Zhang, Markus Fleischauer, Kai Dührkop, Mark Wesner, Shawn J Hoogstra, Edward Rudt, Olena Mokshyna, Corinna Brungs, Kirill Ponomarov, Lana Mutabdžija, Tito Damiani, Chris J Pudney, Mark Earll, Patrick O Helmer, Timothy R Fallon, Tobias Schulze, Albert Rivas-Ubach, Aivett Bilbao, Henning Richter, Louis-Felix Nothias, Mingxun Wang, Matej Oresic, Jing-Ke Weng, Sebastian Böcker, Astrid Jeibmann, Heiko Hayen, Uwe Karst, Pieter C Dorrestein, Daniel Petras, Xiuxia Du, Tomáš Pluskal
Integrative analysis of multimodal mass spectrometry data in MZmine 3. Nature biotechnology (2023)
Aivett Bilbao, Nathalie Munoz Munoz, Joonhoon Kim, Daniel J Orton, Yuqian Gao, Kunal Poorey, Kyle R Pomraning, Karl Weitz, Meagan Burnet, Carrie D Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D Smith, Joshua K Michener, John M Gladden, Erin S Baker, Christopher J Petzold, Young-Mo Kim, Alex Apffel, John M Gladden, Kristin E Burnum-Johnson
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature communications 14 (1) (2023)
Aivett Bilbao, Nathalie Munoz Munoz, Joonhoon Kim, Daniel J Orton, Yuqian Gao, Kunal Poorey, Kyle R Pomraning, Karl Weitz, Meagan Burnet, Carrie D Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D Smith, Joshua K Michener, John M Gladden, Erin S Baker, Christopher J Petzold, Young-Mo Kim, Alex Apffel, John M Gladden, Kristin E Burnum-Johnson
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature communications 14 (1) (2023)
Aivett Bilbao, Nathalie Munoz Munoz, Joonhoon Kim, Daniel J Orton, Yuqian Gao, Kunal Poorey, Kyle R Pomraning, Karl Weitz, Meagan Burnet, Carrie D Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D Smith, Joshua K Michener, John M Gladden, Erin S Baker, Christopher J Petzold, Young-Mo Kim, Alex Apffel, John M Gladden, Kristin E Burnum-Johnson
PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements. Nature communications 14 (1) (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Dylan H Ross, Jian Guo, Aivett Bilbao, Tao Huan, Richard D Smith, Xueyun Zheng
Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland) 28 (8) (2023)
Jesse W Wilson, Aivett Bilbao, Juan Wang, Yen-Chen Liao, Dušan Veličković, Roza Wojcik, Marta Passamonti, Rui Zhao, Andrea F G Gargano, Vincent R Gerbasi, Ljiljana Pas A-Tolić, Scott E Baker, Mowei Zhou
Online Hydrophilic Interaction Chromatography (HILIC) Enhanced Top-Down Mass Spectrometry Characterization of the SARS-CoV-2 Spike Receptor-Binding Domain. Analytical chemistry 94 (15) (2022)
Aivett Bilbao, Dylan H Ross, Joon-Yong Lee, Micah T Donor, Sarah M Williams, Ying Zhu, Helen S C Lazzarin, Richard D Smith, Xueyun Zheng
MZA: A Data Conversion Tool to Facilitate Software Development and Artificial Intelligence Research in Multidimensional Mass Spectrometry. Journal of proteome research (2022)
David J Degnan, Lisa M Bramer, Amanda M White, Mowei Zhou, Aivett Bilbao, Lee Ann McCue
PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R. Journal of proteome research 20 (4) (2021)
Aivett Bilbao, Bryson C Gibbons, Sarah M Stow, Jennifer E Kyle, Kent J Bloodsworth, Samuel H Payne, Richard D Smith, Helen S C Lazzarin, Erin S Baker, John C Fjeldsted
A Preprocessing Tool for Enhanced Ion Mobility-Mass Spectrometry-Based Omics Workflows. Journal of proteome research (2021)
Christopher R Conant, Isaac K Attah, Sandilya V B Garimella, Gabe Nagy, Aivett Bilbao, Richard D Smith, Helen S C Lazzarin
Evaluation of Waveform Profiles for Traveling Wave Ion Mobility Separations in Structures for Lossless Ion Manipulations. Journal of the American Society for Mass Spectrometry 32 (1) (2020)
Xueyun Zheng, Noor A Aly, Yuxuan Zhou, Kevin T Dupuis, Aivett Bilbao, Vanessa L Paurus, Daniel J Orton, Ryan Wilson, Samuel H Payne, Richard D Smith, Erin S Baker
A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chemical science 8 (11) (2017)

Aivett Bilbao.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Aivett Bilbao