Debayan Chakraborty

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 22

Top Topics

High Resolution Mass Spectrometry

Protein Protein

Molecular Dynamics

Top Venues

Journal of chemical theory and computation

The journal of physical chemistry letters

Science advances

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Debayan Chakraborty, Balaka Mondal, D Thirumalai
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA-Protein Complexes. Journal of chemical theory and computation (2024)
Debayan Chakraborty, Balaka Mondal, D Thirumalai
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA-Protein Complexes. Journal of chemical theory and computation (2024)
Debayan Chakraborty, Balaka Mondal, D Thirumalai
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA-Protein Complexes. Journal of chemical theory and computation 20 (3) (2024)
Debayan Chakraborty, Balaka Mondal, D Thirumalai
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA-Protein Complexes. Journal of chemical theory and computation 20 (3) (2024)
Debayan Chakraborty, John E Straub, D Thirumalai
Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald's rule of stages. Science advances 9 (12) (2023)
D Thirumalai, Abhinaw Kumar, Debayan Chakraborty, John E Straub, Mauro Lorenzo Mugnai
Conformational fluctuations and phases in fused in sarcoma (FUS) low-complexity domain. Biopolymers (2023)
Debayan Chakraborty, John E Straub, D Thirumalai
Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald's rule of stages. Science advances 9 (12) (2023)
Debayan Chakraborty, John E Straub, D Thirumalai
Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald's rule of stages. Science advances 9 (12) (2023)
Debayan Chakraborty, Balaka Mondal, D Thirumalai
Brewing COFFEE: a sequence-specific coarse-grained energy function for simulations of DNA-protein complexes. bioRxiv : the preprint server for biology (2023)
Nicy, Debayan Chakraborty, David J Wales
Energy Landscapes for Base-Flipping in a Model DNA Duplex. The journal of physical chemistry. B 126 (16) (2022)
Debayan Chakraborty, Atreyee Banerjee, David J Wales
Side-Chain Polarity Modulates the Intrinsic Conformational Landscape of Model Dipeptides. The journal of physical chemistry. B 125 (22) (2021)
Abhinaw Kumar, Debayan Chakraborty, Mauro Lorenzo Mugnai, John E Straub, D Thirumalai
Sequence Determines the Switch in the Fibril Forming Regions in the Low-Complexity FUS Protein and Its Variants. The journal of physical chemistry letters 12 (37) (2021)
Debayan Chakraborty, John E Straub, D Thirumalai
Differences in the free energies between the excited states of Aβ40 and Aβ42 monomers encode their aggregation propensities. Proceedings of the National Academy of Sciences of the United States of America 117 (33) (2020)
Debayan Chakraborty, Yassmine Chebaro, David J Wales
A multifunnel energy landscape encodes the competing α-helix and β-hairpin conformations for a designed peptide. Physical chemistry chemical physics : PCCP 22 (3) (2020)
Upayan Baul, Debayan Chakraborty, Mauro L Mugnai, John E Straub, D Thirumalai
Sequence Effects on Size, Shape, and Structural Heterogeneity in Intrinsically Disordered Proteins. The journal of physical chemistry. B 123 (16) (2019)
Shiyan Xiao, Daniel J Sharpe, Debayan Chakraborty, David J Wales
Energy Landscapes and Hybridization Pathways for DNA Hexamer Duplexes. The journal of physical chemistry letters 10 (21) (2019)
Debayan Chakraborty, David J Wales
Dynamics of an adenine-adenine RNA conformational switch from discrete path sampling. The Journal of chemical physics 150 (12) (2019)
Jerelle A Joseph, Konstantin Röder, Debayan Chakraborty, Rosemary G Mantell, David J Wales
Exploring biomolecular energy landscapes. Chemical communications (Cambridge, England) 53 (52) (2018)
Himadri S Samanta, Debayan Chakraborty, D Thirumalai
Charge fluctuation effects on the shape of flexible polyampholytes with applications to intrinsically disordered proteins. The Journal of chemical physics 149 (16) (2018)
Debayan Chakraborty, Naoto Hori, D Thirumalai
Sequence-Dependent Three Interaction Site Model for Single- and Double-Stranded DNA. Journal of chemical theory and computation 14 (7) (2018)
Jerelle A Joseph, Debayan Chakraborty, David J Wales
Energy Landscape for Fold-Switching in Regulatory Protein RfaH. Journal of chemical theory and computation 15 (1) (2018)
Debayan Chakraborty, David J Wales
Energy Landscape and Pathways for Transitions between Watson-Crick and Hoogsteen Base Pairing in DNA. The journal of physical chemistry letters 9 (1) (2017)