Naoto Hori

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 16

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Journal of chemical theory and computation

The journal of physical chemistry letters

The journal of physical chemistry. B

University of Texas at Austin

Kyoto University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Texas at Austin Jan 04 2016

United States

Postdoctoral Fellow :: Department of Chemistry

University of Maryland at College Park Feb 01 2014 - Jan 03 2016

United States

Research Associate :: Institute for Physical Science & Technology

Kyoto University Apr 01 2013

Japan

Postdoctoral Fellow :: Department of Biophysics

Kyoto University Apr 01 2009 - Mar 31 2010

Japan

Research Associate :: Department of Biophysics

Education History

Kyoto University Apr 01 2010 - Mar 25 2013

Japan

PHD :: Department of Biophysics

Kobe University Apr 01 2006 - Mar 25 2008

Japan

MSC :: Department of Chemistry

Kobe University Apr 01 2002 - Mar 25 2006

Japan

BSC :: Department of Chemistry

Publications

Hiranmay Maity, Hung T Nguyen, Naoto Hori, D Thirumalai
Salt-Dependent Self-Association of Trinucleotide Repeat RNA Sequences. The journal of physical chemistry letters (2024)
Balaka Mondal, Debayan Chakraborty, Naoto Hori, Hung T Nguyen, D Thirumalai
Competition between Stacking and Divalent Cation-Mediated Electrostatic Interactions Determines the Conformations of Short DNA Sequences. Journal of chemical theory and computation (2024)
Hiranmay Maity, Hung T Nguyen, Naoto Hori, D Thirumalai
Salt-Dependent Self-Association of Trinucleotide Repeat RNA Sequences. The journal of physical chemistry letters 15 (14) (2024)
Balaka Mondal, Debayan Chakraborty, Naoto Hori, Hung T Nguyen, D Thirumalai
Competition between Stacking and Divalent Cation-Mediated Electrostatic Interactions Determines the Conformations of Short DNA Sequences. Journal of chemical theory and computation 20 (7) (2024)
Balaka Mondal, Debayan Chakraborty, Naoto Hori, Hung T Nguyen, D Thirumalai
Competition between Stacking and Divalent Cation-Mediated Electrostatic Interactions Determines the Conformations of Short DNA Sequences. Journal of chemical theory and computation 20 (7) (2024)
Hiranmay Maity, Hung T Nguyen, Naoto Hori, D Thirumalai
Salt-Dependent Self-Association of Trinucleotide Repeat RNA Sequences. The journal of physical chemistry letters 15 (14) (2024)
Hiranmay Maity, Hung T Nguyen, Naoto Hori, D Thirumalai
Odd-even disparity in the population of slipped hairpins in RNA repeat sequences with implications for phase separation. Proceedings of the National Academy of Sciences of the United States of America 120 (24) (2023)
Naoto Hori, D Thirumalai
Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time. Nucleic acids research (2023)
Hung T Nguyen, Naoto Hori, D Thirumalai
Condensates in RNA repeat sequences are heterogeneously organized and exhibit reptation dynamics. Nature chemistry 14 (7) (2022)
Naoto Hori, Natalia A Denesyuk, D Thirumalai
Shape changes and cooperativity in the folding of the central domain of the 16S ribosomal RNA. Proceedings of the National Academy of Sciences of the United States of America 118 (10) (2021)
Hung T Nguyen, Naoto Hori, D Thirumalai
Theory and simulations for RNA folding in mixtures of monovalent and divalent cations. Proceedings of the National Academy of Sciences of the United States of America 116 (42) (2019)
Jorjethe Roca, Naoto Hori, Saroj Baral, Yogambigai Velmurugu, Ranjani Narayanan, Prasanth Narayanan, D Thirumalai, Anjum Ansari
Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot. Proceedings of the National Academy of Sciences of the United States of America 115 (31) (2018)
Natalia A Denesyuk, Naoto Hori, D Thirumalai
Molecular Simulations of Ion Effects on the Thermodynamics of RNA Folding. The journal of physical chemistry. B 122 (50) (2018)
Debayan Chakraborty, Naoto Hori, D Thirumalai
Sequence-Dependent Three Interaction Site Model for Single- and Double-Stranded DNA. Journal of chemical theory and computation 14 (7) (2018)
Naoto Hori, Natalia A Denesyuk, D Thirumalai
Frictional Effects on RNA Folding: Speed Limit and Kramers Turnover. The journal of physical chemistry. B 122 (49) (2018)
Himadri S Samanta, Pavel I Zhuravlev, Michael Hinczewski, Naoto Hori, Shaon Chakrabarti, D Thirumalai
Protein collapse is encoded in the folded state architecture. Soft matter 13 (19) (2017)

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Publication Activity (10 Years)

Top Topics

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Naoto Hori