Dhiman Ray

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 25

Top Venues

Journal of chemical theory and computation

Proceedings of the National Academy of Sciences of the United States of America

The Journal of chemical physics

Journal of chemical information and modeling

University of California Irvine

University of California, Irvine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Irvine Oct 01 2018

United States

Graduate Teaching Assistant :: Chemistry

Education History

University of California, Irvine Sep 08 2018

United States

PHD :: Chemistry

Publications

Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation 20 (13) (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation 20 (13) (2024)
Dhiman Ray, Michele Parrinello
Data-driven classification of ligand unbinding pathways. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Dhiman Ray, Sudip Das, Umberto Raucci
Kinetic View of Enzyme Catalysis from Enhanced Sampling QM/MM Simulations. Journal of chemical information and modeling 64 (9) (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
Correction to A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation (2024)
Dhiman Ray, Michele Parrinello
Data-driven classification of ligand unbinding pathways. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
Correction to A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation 20 (13) (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
Correction to A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation (2024)
Dhiman Ray, Michele Parrinello
Data-driven classification of ligand unbinding pathways. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Dhiman Ray, Sudip Das, Umberto Raucci
Kinetic View of Enzyme Catalysis from Enhanced Sampling QM/MM Simulations. Journal of chemical information and modeling (2024)
Dhiman Ray, Michele Parrinello
Data-driven classification of ligand unbinding pathways. Proceedings of the National Academy of Sciences of the United States of America 121 (10) (2024)
Michael Faran, Dhiman Ray, Shubhadeep Nag, Umberto Raucci, Michele Parrinello, Gili Bisker
A Stochastic Landscape Approach for Protein Folding State Classification. Journal of chemical theory and computation 20 (13) (2024)
Dhiman Ray, Enrico Trizio, Michele Parrinello
Deep learning collective variables from transition path ensemble. The Journal of chemical physics 158 (20) (2023)
Praveen Ranganath Prabhakar, Dhiman Ray, Ioan Andricioaei
Predicting residue cooperativity during protein folding: A combined, molecular dynamics and unsupervised learning approach. The Journal of chemical physics 158 (13) (2023)
Dhiman Ray, Michele Parrinello
Kinetics from Metadynamics: Principles, Applications, and Outlook. Journal of chemical theory and computation (2023)
Sharon Emily Stone, Dhiman Ray, Ioan Andricioaei
Force-Field-Dependent DNA Breathing Dynamics: A Case Study of Hoogsteen Base Pairing in A6-DNA. Journal of chemical information and modeling (2022)
Dhiman Ray, Narjes Ansari, Valerio Rizzi, Michele Invernizzi, Michele Parrinello
Rare Event Kinetics from Adaptive Bias Enhanced Sampling. Journal of chemical theory and computation 18 (11) (2022)
Dhiman Ray, Riley Nicolas Quijano, Ioan Andricioaei
Point mutations in SARS-CoV-2 variants induce long-range dynamical perturbations in neutralizing antibodies. Chemical science 13 (24) (2022)
Dhiman Ray, Sharon Emily Stone, Ioan Andricioaei
Markovian Weighted Ensemble Milestoning (M-WEM): Long-Time Kinetics from Short Trajectories. Journal of chemical theory and computation 18 (1) (2021)
Dhiman Ray, Ly Le, Ioan Andricioaei
Distant residues modulate conformational opening in SARS-CoV-2 spike protein. Proceedings of the National Academy of Sciences of the United States of America 118 (43) (2021)
Dhiman Ray, Trevor Gokey, David L Mobley, Ioan Andricioaei
Kinetics and free energy of ligand dissociation using weighted ensemble milestoning. The Journal of chemical physics 153 (15) (2020)
Dhiman Ray, Ioan Andricioaei
Weighted ensemble milestoning (WEM): A combined approach for rare event simulations. The Journal of chemical physics 152 (23) (2020)
Smita Ghosh, Dhiman Ray, Ashwani K Tiwari
Effects of alloying on mode-selectivity in H2O dissociation on Cu/Ni bimetallic surfaces. The Journal of chemical physics 150 (11) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Dhiman Ray