Dmitrii E Makarov (D E Makarov)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 24

Top Topics

Molecular Dynamics Simulations

Atomic Force Microscopy

Depressive Symptoms

Top Venues

The journal of physical chemistry. B

Proceedings of the National Academy of Sciences of the United States of America

The Journal of chemical physics

The journal of physical chemistry letters

This page only lists publications with an associated author ORCID identifier.

Publications

Kristian Blom, Kevin Song, Etienne Vouga, Aljaž Godec, Dmitrii E Makarov
Milestoning estimators of dissipation in systems observed at a coarse resolution. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Kristian Blom, Kevin Song, Etienne Vouga, Aljaž Godec, Dmitrii E Makarov
Milestoning estimators of dissipation in systems observed at a coarse resolution. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Kristian Blom, Kevin Song, Etienne Vouga, Aljaž Godec, Dmitrii E Makarov
Milestoning estimators of dissipation in systems observed at a coarse resolution. Proceedings of the National Academy of Sciences of the United States of America 121 (17) (2024)
Kevin Song, Dmitrii E Makarov, Etienne Vouga
The effect of time resolution on the observed first passage times in diffusive dynamics. The Journal of chemical physics 158 (11) (2023)
Dmitrii E Makarov, Alexander M Berezhkovskii, Gilad Haran, Eli Pollak
The Effect of Time Resolution on Apparent Transition Path Times Observed in Single-Molecule Studies of Biomolecules. The journal of physical chemistry. B 126 (40) (2022)
Ali Imran, Brandon S Moyer, Aaron J Wolfe, Michael S Cosgrove, Dmitrii E Makarov, Liviu Movileanu
Interplay of Affinity and Surface Tethering in Protein Recognition. The journal of physical chemistry letters 13 (18) (2022)
Dmitrii E Makarov
Barrier Crossing Dynamics from Single-Molecule Measurements. The journal of physical chemistry. B 125 (10) (2021)
Alexander M Berezhkovskii, Sergey M Bezrukov, Dmitrii E Makarov
Localized potential well vs binding site: Mapping solute dynamics in a membrane channel onto one-dimensional description. The Journal of chemical physics 154 (11) (2021)
Dmitrii E Makarov
Life in silico: Are we close yet? Proceedings of the National Academy of Sciences of the United States of America 118 (7) (2021)
Dmitrii E Makarov, Hagen Hofmann
Does Electric Friction Matter in Living Cells? The journal of physical chemistry. B 125 (23) (2021)
Rohit Satija, Alexander M Berezhkovskii, Dmitrii E Makarov
Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapes. Proceedings of the National Academy of Sciences of the United States of America 117 (44) (2020)
Alexander M Berezhkovskii, Dmitrii E Makarov
Detailed balance for diffusion in a potential with trapping and forward-backward symmetry of trapping time distributions. The Journal of chemical physics 152 (22) (2020)
Alexander M Berezhkovskii, Dmitrii E Makarov
From Nonequilibrium Single-Molecule Trajectories to Underlying Dynamics. The journal of physical chemistry letters 11 (5) (2020)
Masoumeh Ozmaian, Dmitrii E Makarov
Transition path dynamics in the binding of intrinsically disordered proteins: A simulation study. The Journal of chemical physics 151 (23) (2020)
Piao Ma, Ron Elber, Dmitrii E Makarov
Value of Temporal Information When Analyzing Reaction Coordinates. Journal of chemical theory and computation 16 (10) (2020)
Rohit Satija, Atanu Das, Steffen Mühle, Jörg Enderlein, Dmitrii E Makarov
Kinetics of Loop Closure in Disordered Proteins: Theory vs Simulations vs Experiments. The journal of physical chemistry. B 124 (17) (2020)
J P Renn, S Bhattacharyya, H Bai, C He, H Li, A F Oberhauser, J F Marko, Dmitrii E Makarov, Andreas Matouschek
Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force. Scientific reports 9 (1) (2019)
Rohit Satija, Dmitrii E Makarov
Generalized Langevin Equation as a Model for Barrier Crossing Dynamics in Biomolecular Folding. The journal of physical chemistry. B 123 (4) (2019)
Jeremy Copperman, David Aristoff, Dmitrii E Makarov, Gideon Simpson, Daniel M Zuckerman
Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture. The Journal of chemical physics 151 (17) (2019)
Flurin Sturzenegger, Franziska Zosel, Erik D Holmstrom, Karin J Buholzer, Dmitrii E Makarov, Daniel Nettels, Benjamin Schuler
Transition path times of coupled folding and binding reveal the formation of an encounter complex. Nature communications 9 (1) (2018)
Atanu Das, Dmitrii E Makarov
Dynamics of Disordered Proteins under Confinement: Memory Effects and Internal Friction. The journal of physical chemistry. B 122 (39) (2018)
Alexander M Berezhkovskii, Dmitrii E Makarov
Single-Molecule Test for Markovianity of the Dynamics along a Reaction Coordinate. The journal of physical chemistry letters 9 (9) (2018)
Eduardo Medina, Rohit Satija, Dmitrii E Makarov
Transition Path Times in Non-Markovian Activated Rate Processes. The journal of physical chemistry. B 122 (49) (2018)
Ramesh Adhikari, Dmitrii E Makarov
Mechanochemical Kinetics in Elastomeric Polymer Networks: Heterogeneity of Local Forces Results in Nonexponential Kinetics. The journal of physical chemistry. B 121 (10) (2017)