Ron Elber

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Topics

Structural Basis

Chronic Myeloid Leukemia

Molecular Dynamics

Top Venues

The journal of physical chemistry. B

Journal of chemical theory and computation

The Journal of chemical physics

The journal of physical chemistry letters

This page only lists publications with an associated author ORCID identifier.

Publications

Brajesh Narayan, Ron Elber
Comparison of Accuracy and Efficiency of Milestoning Variants: Introducing Buffer Milestoning. The journal of physical chemistry. B (2024)
Brajesh Narayan, Ron Elber
Comparison of Accuracy and Efficiency of Milestoning Variants: Introducing Buffer Milestoning. The journal of physical chemistry. B 128 (6) (2024)
Clark Templeton, Ian Hamilton, Rick Russell, Ron Elber
Impact of Ion-Mixing Entropy on Orientational Preferences of DNA Helices: FRET Measurements and Computer Simulations. The journal of physical chemistry. B (2023)
Ru Wang, Hao Wang, Wenjian Liu, Ron Elber
Approximating First Hitting Point Distribution in Milestoning for Rare Event Kinetics. Journal of chemical theory and computation (2023)
Ron Elber
Defect Formation and Peptide Permeation across Phospholipid Membranes. The journal of physical chemistry. B (2023)
Ehud Neumann, Yang Sung Sohn, Sydney C Povilaitis, Alfredo E Cardenas, Ron Mittler, Assaf Friedler, Lauren J Webb, Rachel Nechushtai, Ron Elber
Visualization of Molecular Permeation into a Multi-compartment Phospholipid Vesicle. The journal of physical chemistry letters (2023)
Alfredo E Cardenas, Chad I Drexler, Rachel Nechushtai, Ron Mittler, Assaf Friedler, Lauren J Webb, Ron Elber
Peptide Permeation across a Phosphocholine Membrane: An Atomically Detailed Mechanism Determined through Simulations and Supported by Experimentation. The journal of physical chemistry. B 126 (15) (2022)
Alfredo E Cardenas, Allison Hunter, Hao Wang, Ron Elber
ScMiles2: A Script to Conduct and Analyze Milestoning Trajectories for Long Time Dynamics. Journal of chemical theory and computation 18 (11) (2022)
Yang Sung Sohn, Anat Losub-Amir, Alfredo E Cardenas, Ola Karmi, Merav Darash Yahana, Tal Gruman, Linda Rowland, Henri-Baptiste Marjault, Lauren J Webb, Ron Mittler, Ron Elber, Assaf Friedler, Rachel Nechushtai
A peptide-derived strategy for specifically targeting the mitochondria and ER of cancer cells: a new approach in fighting cancer. Chemical science 13 (23) (2022)
Ghulam Abbas, Alfredo E Cardenas, Ron Elber
The Structures of Heterogeneous Membranes and Their Interactions with an Anticancer Peptide: A Molecular Dynamics Study. Life (Basel, Switzerland) 12 (10) (2022)
Sydney C Povilaitis, Arman Fathizadeh, Molly Kogan, Ron Elber, Lauren J Webb
Design of Peptides for Membrane Insertion: The Critical Role of Charge Separation. The journal of physical chemistry. B 126 (34) (2022)
Hao Wang, Ron Elber
Catalytic Magnesium as a Door Stop for DNA Sliding. The journal of physical chemistry. B 125 (14) (2021)
Brajesh Narayan, Nicolae-Viorel Buchete, Ron Elber
Computer Simulations of the Dissociation Mechanism of Gleevec from Abl Kinase with Milestoning. The journal of physical chemistry. B 125 (22) (2021)
Mason L Valentine, Maya K Waterland, Arman Fathizadeh, Ron Elber, Carlos R Baiz
Interfacial Dynamics in Lipid Membranes: The Effects of Headgroup Structures. The journal of physical chemistry. B 125 (5) (2021)
Clark Templeton, Ron Elber
Correction to "Simple and Analytical Model of RNA Collapse". The journal of physical chemistry. B 125 (27) (2021)
Yevhen K Cherniavskyi, Arman Fathizadeh, Ron Elber, D Peter Tieleman
Computer simulations of a heterogeneous membrane with enhanced sampling techniques. The Journal of chemical physics 153 (14) (2021)
Arman Fathizadeh, Eric Senning, Ron Elber
Impact of the Protonation State of Phosphatidylinositol 4,5-Bisphosphate (PIP2) on the Binding Kinetics and Thermodynamics to Transient Receptor Potential Vanilloid (TRPV5): A Milestoning Study. The journal of physical chemistry. B 125 (33) (2021)
Hao Wang, Nathan Huang, Tyler Dangerfield, Kenneth A Johnson, Jiali Gao, Ron Elber
Exploring the Reaction Mechanism of HIV Reverse Transcriptase with a Nucleotide Substrate. The journal of physical chemistry. B 124 (21) (2020)
Clark Templeton, Ron Elber
Simple and Analytical Model of RNA Collapse. The journal of physical chemistry. B 124 (25) (2020)
Wei Wei, Ron Elber
ScMile: A Script to Investigate Kinetics with Short Time Molecular Dynamics Trajectories and the Milestoning Theory. Journal of chemical theory and computation 16 (2) (2020)
Hao Wang, Ron Elber
Milestoning with wind: Exploring the impact of a biasing potential in exact calculation of kinetics. The Journal of chemical physics 152 (22) (2020)
Arman Fathizadeh, Mason Valentine, Carlos R Baiz, Ron Elber
Phase Transition in a Heterogeneous Membrane: Atomically Detailed Picture. The journal of physical chemistry letters 11 (13) (2020)
Piao Ma, Ron Elber, Dmitrii E Makarov
Value of Temporal Information When Analyzing Reaction Coordinates. Journal of chemical theory and computation 16 (10) (2020)
Serdal Kirmizialtin, Felicia Pitici, Alfredo E Cardenas, Ron Elber, D Thirumalai
Dramatic Shape Changes Occur as Cytochrome c Folds. The journal of physical chemistry. B 124 (38) (2020)
Arman Fathizadeh, Molly Kogan, Cari M Anderson, Lauren J Webb, Ron Elber
Defect-Assisted Permeation Through a Phospholipid Membrane: Experimental and Computational Study of the Peptide WKW. The journal of physical chemistry. B 123 (31) (2019)
Alfredo E Cardenas, Cari M Anderson, Ron Elber, Lauren J Webb
Partition of Positively and Negatively Charged Tryptophan Ions in Membranes with Inverted Phospholipid Heads: Simulations and Experiments. The journal of physical chemistry. B 123 (15) (2019)
Piao Ma, Alfredo E Cardenas, Mangesh I Chaudhari, Ron Elber, Susan L B Rempe
Probing Translocation in Mutants of the Anthrax Channel: Atomically Detailed Simulations with Milestoning. The journal of physical chemistry. B 122 (45) (2018)
Arman Fathizadeh, Ron Elber
A mixed alchemical and equilibrium dynamics to simulate heterogeneous dense fluids: Illustrations for Lennard-Jones mixtures and phospholipid membranes. The Journal of chemical physics 149 (7) (2018)
Clark Templeton, Serena H Chen, Arman Fathizadeh, Ron Elber
Rock climbing: A local-global algorithm to compute minimum energy and minimum free energy pathways. The Journal of chemical physics 147 (15) (2018)
Clark Templeton, Ron Elber
Why Does RNA Collapse? The Importance of Water in a Simulation Study of Helix-Junction-Helix Systems. Journal of the American Chemical Society 140 (49) (2018)
Cari M Anderson, Alfredo Cardenas, Ron Elber, Lauren J Webb
Preferential Equilibrium Partitioning of Positively Charged Tryptophan into Phosphatidylcholine Bilayer Membranes. The journal of physical chemistry. B 123 (1) (2018)
Arman Fathizadeh, Ron Elber
Ion Permeation through a Phospholipid Membrane: Transition State, Path Splitting, and Calculation of Permeability. Journal of chemical theory and computation 15 (1) (2018)
Rebika Shrestha, Cari M Anderson, Alfredo E Cardenas, Ron Elber, Lauren J Webb
Direct Measurement of the Effect of Cholesterol and 6-Ketocholestanol on the Membrane Dipole Electric Field Using Vibrational Stark Effect Spectroscopy Coupled with Molecular Dynamics Simulations. The journal of physical chemistry. B 121 (15) (2017)
Piao Ma, Alfredo E Cardenas, Mangesh I Chaudhari, Ron Elber, Susan L B Rempe
The Impact of Protonation on Early Translocation of Anthrax Lethal Factor: Kinetics from Molecular Dynamics Simulations and Milestoning Theory. Journal of the American Chemical Society 139 (42) (2017)
Murat Atis, Kenneth A Johnson, Ron Elber
Pyrophosphate Release in the Protein HIV Reverse Transcriptase. The journal of physical chemistry. B 121 (41) (2017)