Ezgi Karaca

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 18

Top Venues

Proteins

Cells

Turkish journal of biology = Turk biyoloji dergisi

Cancer immunology, immunotherapy : CII

Izmir Biomedicine and Genome Center

Universiteit Utrecht (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Izmir Biomedicine and Genome Center May 01 2017

Turkey

Principal Investigator :: Basic and Translational Research Program

European Molecular Biology Laboratory Aug 01 2013 - Aug 31 2016

Germany

Postdoctoral Fellow :: Structural and Computational Biology

Education History

Universiteit Utrecht Oct 01 2008 - Feb 28 2013

Netherlands

PHD :: Chemistry

Boğaziçi Üniversitesi Sep 01 2006 - Sep 30 2008

Turkey

MSC :: Chemical Engineering

Boğaziçi Üniversitesi Sep 01 2001 - Jun 30 2006

Turkey

BSC :: Chemical Engineering

Publications

Rodrigo V Honorato, Mikael E Trellet, Brian Jiménez-García, Jörg J Schaarschmidt, Marco Giulini, Victor Reys, Panagiotis I Koukos, João P G L M Rodrigues, Ezgi Karaca, Gydo C P van Zundert, Jorge Roel-Touris, Charlotte W van Noort, Zuzana Jandová, Adrien S J Melquiond, Alexandre M J J Bonvin
The HADDOCK2.4 web server for integrative modeling of biomolecular complexes. Nature protocols (2024)
Andriy Kryshtafovych, Gaetano T Montelione, Daniel J Rigden, Shahram Mesdaghi, Ezgi Karaca, John Moult
Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15. Proteins (2023)
Burcu Özden, Andriy Kryshtafovych, Ezgi Karaca
The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15. bioRxiv : the preprint server for biology (2023)
Burcu Özden, Eda Şamiloğlu, Atakan Özsan, Mehmet Erguven, Can Yükrük, Mehdi Koşaca, Melis Oktayoğlu, Muratcan Menteş, Nazmiye Arslan, Gökhan Karakülah, Ayşe Berçin Barlas, Busra Savas, Ezgi Karaca
Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set. Proteins (2023)
Burcu Ozden, Ramachandran Boopathi, Ayşe Berçin Barlas, Imtiaz N Lone, Jan Bednar, Carlo Petosa, Seyit Kale, Ali Hamiche, Dimitar Angelov, Stefan Dimitrov, Ezgi Karaca
Molecular Mechanism of Nucleosome Recognition by the Pioneer Transcription Factor Sox. Journal of chemical information and modeling (2023)
Didem Naz Dioken, Ibrahim Ozgul, Irem Yilmazbilek, Mustafa Cengiz Yakicier, Ezgi Karaca, Ayse Elif Erson-Bensan
An alternatively spliced PD-L1 isoform PD-L1∆3, and PD-L2 expression in breast cancers: implications for eligibility scoring and immunotherapy response. Cancer immunology, immunotherapy : CII (2023)
Gülden Özden-Yılmaz, Busra Savas, Ahmet Bursalı, Aleyna Eray, Alirıza Arıbaş, Serif Senturk, Ezgi Karaca, Gökhan Karakülah, Serap Erkek-Ozhan
Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines. Cells 12 (6) (2023)
Necati Atalay, Enver Kamil Akcan, Mehmet Gül, Esra Ayan, Ebru Destan, Fatma Betül Ertem, Nurettin Tokay, Barış Çakilkaya, Zeliş Nergiz, Gözde Karakadioğlu, Abdullah Kepceoğlu, İlkin Yapici, Bilge Tosun, Nilüfer Baldir, Günseli Yildirim, J Austin Johnson, Ömür Güven, Alaleh Shafiei, Nazlı Eylül Arslan, Merve Yilmaz, Cahine Kulakman, Seyide Seda Paydos, Zeynep Sena Çinal, Kardelen Şabanoğlu, Ayşegül Pazarçeviren, Ayşenur Yilmaz, Başak Canbay, Bengisu Aşci, Esra Kartal, Serra Tavli, Mehmet Çaliseki, Gunce Goc, Arif Mermer, Gamze Yeşilay, Sevde Altuntaş, Hiroshi Tateishi, Masami Otsuka, Mikako Fujita, Şaban Tekİn, Halilibrahim Çiftçi, Serdar Durdagi, Gizem Dinler Doganay, Ezgi Karaca, Burcu Kaplan Türköz, Burak Veli Kabasakal, Ahmet Kati, Hasan DeMirci
Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source " Turkish DeLight ". Turkish journal of biology = Turk biyoloji dergisi 47 (1) (2023)
Gülden Özden-Yılmaz, Busra Savas, Ahmet Bursalı, Aleyna Eray, Alirıza Arıbaş, Serif Senturk, Ezgi Karaca, Gökhan Karakülah, Serap Erkek-Ozhan
Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines. Cells 12 (6) (2023)
Burcu Özden, Andriy Kryshtafovych, Ezgi Karaca
The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Proteins (2023)
Gülden Özden-Yılmaz, Busra Savas, Ahmet Bursalı, Aleyna Eray, Alirıza Arıbaş, Serif Senturk, Ezgi Karaca, Gökhan Karakülah, Serap Erkek-Ozhan
Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines. Cells 12 (6) (2023)
Mehmet Erguven, Nicolas V Cornelissen, Aileen Peters, Ezgi Karaca, Andrea Rentmeister
Enzymatic Generation of Double-Modified AdoMet Analogues and Their Application in Cascade Reactions with Different Methyltransferases. Chembiochem : a European journal of chemical biology (2022)
A Semra Hiz, Seval Kiliç, Güney Bademci, Tülay Karakulak, Aybike Erdoğan, Burcu Özden, Çiğdem Eresen, Esra Erdal, Uluç Yiş, Mustafa Tekin, Gökhan Karakülah, Ezgi Karaca, Mehmet Ozturk
VARS1 mutations associated with neurodevelopmental disorder are located on a short amino acid stretch of the anticodon-binding domain. Turkish journal of biology = Turk biyoloji dergisi 46 (6) (2022)
Mehmet Erguven, Seval Kiliç, Ezgi Karaca, M Kasim Diril
Genetic complementation screening and molecular docking give new insight on phosphorylation-dependent Mastl kinase activation. Journal of biomolecular structure & dynamics (2022)
Ayca Circir, Gozde Koksal Bicakci, Busra Savas, Didem Naz Doken, Şevki Onur Henden, Tolga Can, Ezgi Karaca, Ayse Elif Erson-Bensan
A C-term truncated EIF2Bγ protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2Bγ-EIF2γ interactions. Proteins (2021)
Burcu Özden, Andriy Kryshtafovych, Ezgi Karaca
Assessment of the CASP14 assembly predictions. Proteins 89 (12) (2021)
Hormos Salimi Dafsari, Rosanne Sprute, Gilbert Wunderlich, Hülya-Sevcan Daimagüler, Ezgi Karaca, Adriana Contreras, Kerstin Becker, Mira Schulze-Rhonhof, Karl Kiening, Tülay Karakulak, Manja Kloss, Annette Horn, Amande Pauls, Peter Nürnberg, Janine Altmüller, Holger Thiele, Birgit Assmann, Anne Koy, Sebahattin Cirak
Novel mutations in KMT2B offer pathophysiological insights into childhood-onset progressive dystonia. Journal of human genetics 64 (8) (2019)
Athanasia Pavlopoulou, Ezgi Karaca, Alma Balestrazzi, Alexandros G Georgakilas
In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress. Oxidative medicine and cellular longevity 2019 (2019)

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Publication Activity (10 Years)

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Ezgi Karaca