Andriy Kryshtafovych

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 58

Top Venues

Proteins

Nature methods

Research square

bioRxiv : the preprint server for biology

University of California Davis

National Academy of Sciences of Ukraine (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Davis Jul 01 2005

United States

Project Scientist :: Genome Center

Lawrence Livermore National Laboratory Feb 01 2002 - Jun 30 2005

United States

Staff scientist :: Biology and Biotechnology Research Program

University of California Davis Apr 12 2000 - Feb 01 2002

United States

Visiting Scientist :: Applied Science

Institute of Applied Problems of Mechanics and Mathematics, National Academy of Sciences of Ukraine Jul 01 1989 - Apr 10 2000

Ukraine

Scientist :: Contact mechanics

Education History

National Academy of Sciences of Ukraine Sep 01 1992 - Sep 01 1995

Ukraine

PHD :: Insitute for Applied Problems of Mechanics and Mathematics

Ivan Franko National University of Lviv Sep 01 1982 - Sep 01 1989

Ukraine

MSC :: Mechanics and Mathematics

Publications

Catherine L Lawson, Andriy Kryshtafovych, Grigore Pintilie, Stephen Burley, Jiri Cerny, Vincent Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael Prisant, Randy J Read, Jane S Richardson, Alexis Rohou, Bohdan Schneider, Benjamin Sellers, Chenghua Chao, Elizabeth Sourial, Chris Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel Moriarty, Andrew Muenks, Garib Murshudov, Robert Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar Pothula, Christopher Rowley, Daipayan Sarkar, Luisa Schäfer, Christopher Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea Vaiana, Sundeep Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen Berman, Wah Chiu
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge. Research square (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael G Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Nature methods 21 (7) (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge. Research square (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael G Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Nature methods 21 (7) (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael G Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Nature methods (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge. Research square (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore Pintilie, Stephen Burley, Jiri Cerny, Vincent Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael Prisant, Randy J Read, Jane S Richardson, Alexis Rohou, Bohdan Schneider, Benjamin Sellers, Chenghua Chao, Elizabeth Sourial, Chris Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel Moriarty, Andrew Muenks, Garib Murshudov, Robert Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar Pothula, Christopher Rowley, Daipayan Sarkar, Luisa Schäfer, Christopher Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea Vaiana, Sundeep Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen Berman, Wah Chiu
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge. Research square (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael G Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Nature methods 21 (7) (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge. Research square (2024)
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiri Cerny, Vincent B Chen, Paul Emsley, Alberto Gobbi, Andrzej Joachimiak, Sigrid Noreng, Michael G Prisant, Randy J Read, Jane S Richardson, Alexis L Rohou, Bohdan Schneider, Benjamin D Sellers, Chenghua Shao, Elizabeth Sourial, Chris I Williams, Christopher J Williams, Ying Yang, Venkat Abbaraju, Pavel V Afonine, Matthew L Baker, Paul S Bond, Thomas L Blundell, Tom Burnley, Arthur Campbell, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Frank Dimaio, Reza Esmaeeli, Nabin Giri, Helmut Grubmüller, Soon Wen Hoh, Jie Hou, Corey F Hryc, Carola Hunte, Maxim Igaev, Agnel-Praveen Joseph, Wei-Chun Kao, Daisuke Kihara, Dilip Kumar, Lijun Lang, Sean Lin, Sai Raghavendra Maddhuri Venkata Subramaniya, Sumit Mittal, Arup Mondal, Nigel W Moriarty, Andrew Muenks, Garib N Murshudov, Robert A Nicholls, Mateusz Olek, Colin M Palmer, Alberto Perez, Emmi Pohjolainen, Karunakar R Pothula, Christopher N Rowley, Daipayan Sarkar, Luisa U Schäfer, Christopher J Schlicksup, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Oleg V Sobolev, Genki Terashi, Andrea C Vaiana, Sundeep C Vedithi, Jacob Verburgt, Xiao Wang, Rangana Warshamanage, Martyn David Winn, Simone Weyand, Keitaro Yamashita, Minglei Zhao, Michael F Schmid, Helen M Berman, Wah Chiu
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Nature methods (2024)
Andriy Kryshtafovych, Gaetano T Montelione, Daniel J Rigden, Shahram Mesdaghi, Ezgi Karaca, John Moult
Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15. Proteins (2023)
Thomas Mulvaney, Rachael C Kretsch, Luc Elliott, Joseph George Beton, Andriy Kryshtafovych, Daniel J Rigden, Rachel J Hagey, Andriy Kryshtafovych
CASP15 cryoEM protein and RNA targets: refinement and analysis using experimental maps. bioRxiv : the preprint server for biology (2023)
Rachael C Kretsch, Ebbe Sloth Andersen, Janusz M Bujnicki, Wah Chiu, Rachel J Hagey, Bingnan Luo, Benoît Masquida, Ewan K S McRae, Griffin M Schroeder, Zhaoming Su, Joseph E Wedekind, Lily Xu, Kaiming Zhang, Ivan N Zheludev, John Moult, Andriy Kryshtafovych
RNA target highlights in CASP15: Evaluation of predicted models by structure providers. Proteins (2023)
Burcu Özden, Andriy Kryshtafovych, Ezgi Karaca
The Impact of AI-Based Modeling on the Accuracy of Protein Assembly Prediction: Insights from CASP15. bioRxiv : the preprint server for biology (2023)
Leila Tamara Alexander, Janani Durairaj, Andriy Kryshtafovych, Luciano Andrés Abriata, Yusupha Bayo, Gira Bhabha, Cécile Breyton, Simon G Caulton, James Chen, Séraphine Degroux, Damian C Ekiert, Benedikte S Erlandsen, Peter L Freddolino, Dominic Gilzer, Chris Greening, Jonathan M Grimes, Rhys W Grinter, Manickam Gurusaran, Marcus D Hartmann, Charlie J Hitchman, Jeremy Russell Keown, Ashleigh Kropp, Petri Kursula, Andrew Lee Lovering, Bruno Lemaître, Andrea Lia, Shiheng Liu, Maria Logotheti, Shuze Lu, Sigurbjörn Markússon, Mitchell D Miller, George Minasov, Hartmut H Niemann, Felipe Opazo, George N Philips, Owen Richard Davies, Samuel Rommelaere, Monica Rosas-Lemus, Pietro Roversi, Karla J F Satchell, Nathan Smith, Mark A Wilson, Kuan-Lin Wu, Xian Xia, Han Xiao, Wenhua Zhang, Z Hong Zhou, Krzysztof Fidelis, Andriy Kryshtafovych, John Moult, Torsten Schwede
Protein target highlights in CASP15: Analysis of models by structure providers. Proteins (2023)
Andriy Kryshtafovych, Torsten Schwede, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
Critical assessment of methods of protein structure prediction (CASP)-Round XV. Proteins (2023)
Andriy Kryshtafovych, Daniel J Rigden
To split or not to split: CASP15 targets and their processing into tertiary structure evaluation units. Proteins (2023)
Thomas Mulvaney, Rachael C Kretsch, Luc Elliott, Joseph George Beton, Andriy Kryshtafovych, Daniel J Rigden, Rachel J Hagey, Andriy Kryshtafovych
CASP15 cryo-EM protein and RNA targets: Refinement and analysis using experimental maps. Proteins 91 (12) (2023)
Burcu Özden, Andriy Kryshtafovych, Ezgi Karaca
The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15. Proteins (2023)
Adam J Simpkin, Shahram Mesdaghi, Filomeno Sánchez Rodríguez, Luc Elliott, David L Murphy, Andriy Kryshtafovych, Ronan M Keegan, Daniel J Rigden
Tertiary structure assessment at CASP15. Proteins (2023)
Andriy Kryshtafovych, Maciej Antczak, Marta Szachniuk, Tomasz Zok, Rachael C Kretsch, Ramya Rangan, Phillip Pham, Rachel J Hagey, Xavier Robin, Gabriel Studer, Janani Durairaj, Jerome Eberhardt, Aaron Sweeney, Maya Topf, Torsten Schwede, Krzysztof Fidelis, John Moult
New prediction categories in CASP15. Proteins (2023)
Lisa N Kinch, Jimin Pei, Andriy Kryshtafovych, R Dustin Schaeffer, Nick V Grishin
Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14). Proteins 89 (12) (2021)
Andriy Kryshtafovych, Torsten Schwede, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
Critical assessment of methods of protein structure prediction (CASP)-Round XIV. Proteins 89 (12) (2021)
Lisa N Kinch, R Dustin Schaeffer, Andriy Kryshtafovych, Nick V Grishin
Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14). Proteins 89 (12) (2021)
Catherine L Lawson, Andriy Kryshtafovych, Paul D Adams, Pavel V Afonine, Matthew L Baker, Benjamin A Barad, Paul S Bond, Tom Burnley, Renzhi Cao, Jianlin Cheng, Grzegorz Chojnowski, Kathryn D Cowtan, Ken A Dill, Frank DiMaio, Daniel P Farrell, Brian K Shoichet, Mark A Herzik, Soon Wen Hoh, Jie Hou, Li-Wei Hung, Maxim Igaev, Agnel-Praveen Joseph, Daisuke Kihara, Dilip Kumar, Sumit Mittal, Bohdan Monastyrskyy, Mateusz Olek, Colin M Palmer, Ardan Patwardhan, Alberto Perez, Jonas Pfab, Grigore D Pintilie, Jane S Richardson, Peter B Rosenthal, Daipayan Sarkar, Luisa U Schäfer, Michael F Schmid, Gunnar F Schröder, Mrinal Shekhar, Dong Si, Abhishek Singharoy, Genki Terashi, Thomas C Terwilliger, Andrea C Vaiana, Liguo Wang, Zhe Wang, Stephanie A Wankowicz, Christopher J Williams, Martyn David Winn, Tianqi Wu, Xiaodi Yu, Kaiming Zhang, Helen M Berman, Wah Chiu
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nature methods 18 (2) (2021)
R Dustin Schaeffer, Lisa N Kinch, Andriy Kryshtafovych, Nick V Grishin
Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14). Proteins 89 (12) (2021)
Leila Tamara Alexander, Rosalba Lepore, Andriy Kryshtafovych, Athanassios Adamopoulos, Markus Alahuhta, Ann M Arvin, Yannick J Bomble, Bettina Böttcher, Cécile Breyton, Valerio Chiarini, Naga Babu Chinnam, Wah Chiu, Krzysztof Fidelis, Rhys W Grinter, Gagan D Gupta, Marcus D Hartmann, Christopher S Hayes, Tatjana Heidebrecht, Andrea Ilari, Andrzej Joachimiak, Youngchang Kim, Romain Linares, Andrew L Lovering, Vladimir V Lunin, Andrei N Lupas, Cihan Makbul, Karolina Michalska, John Moult, Prasun K Mukherjee, William Sam Nutt, Stefan L Oliver, Anastassis Perrakis, Lucy Stols, John A Tainer, Maya Topf, Susan E Tsutakawa, Mauricio Valdivia-Delgado, Torsten Schwede
Target highlights in CASP14: Analysis of models by structure providers. Proteins 89 (12) (2021)
Tristan Cragnolini, Andriy Kryshtafovych, Andriy Kryshtafovych
Cryo-EM targets in CASP14. Proteins 89 (12) (2021)
Andriy Kryshtafovych, John Moult, Wendy M Billings, Dennis Della Corte, Krzysztof Fidelis, Sohee Kwon, Kliment Olechnovič, Chaok Seok, Česlovas Venclovas, Jonghun Won, null null
Modeling SARS-CoV-2 proteins in the CASP-commons experiment. Proteins 89 (12) (2021)
Adam J Simpkin, Filomeno Sánchez Rodríguez, Shahram Mesdaghi, Andriy Kryshtafovych, Daniel J Rigden
Evaluation of model refinement in CASP14. Proteins 89 (12) (2021)
Sohee Kwon, Jonghun Won, Andriy Kryshtafovych, Chaok Seok
Assessment of protein model structure accuracy estimation in CASP14: Old and new challenges. Proteins 89 (12) (2021)
Burcu Özden, Andriy Kryshtafovych, Ezgi Karaca
Assessment of the CASP14 assembly predictions. Proteins 89 (12) (2021)
Yuanpeng Janet Huang, Ning Zhang, Beate Bersch, Krzysztof Fidelis, Masayori Inouye, Yojiro Ishida, Andriy Kryshtafovych, Naohiro Kobayashi, Yutaka Kuroda, Gaohua Liu, Andy LiWang, Gurla V T Swapna, Nan Wu, Toshio Yamazaki, Gaetano T Montelione
Assessment of prediction methods for protein structures determined by NMR in CASP14: Impact of AlphaFold2. Proteins 89 (12) (2021)
Victoria Ruiz Serra, Camila Pontes, Edoardo Milanetti, Andriy Kryshtafovych, Rosalba Lepore, Alfonso Valencia
Assessing the accuracy of contact and distance predictions in CASP14. Proteins 89 (12) (2021)
Davide Sala, Yuanpeng Janet Huang, Casey A Cole, David A Snyder, Gaohua Liu, Yojiro Ishida, G V T Swapna, Kelly P Brock, Chris Sander, Krzysztof Fidelis, Andriy Kryshtafovych, Masayori Inouye, Roberto Tejero, Homayoun Valafar, Antonio Rosato, Gaetano T Montelione
Protein structure prediction assisted with sparse NMR data in CASP13. Proteins 87 (12) (2020)
J Eduardo Fajardo, Rojan Shrestha, Nelson Gil, Adam Belsom, Silvia N Crivelli, Cezary Czaplewski, Krzysztof Fidelis, Sergei Grudinin, Mikhail Karasikov, Agnieszka S Karczyńska, Andriy Kryshtafovych, Alexander Leitner, Adam Liwo, Emilia A Lubecka, Bohdan Monastyrskyy, Guillaume Pagès, Juri Rappsilber, Adam K Sieradzan, Celina Sikorska, Esben Trabjerg, Andras Fiser
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins 88 (3) (2020)
Lisa N Kinch, Andriy Kryshtafovych, Bohdan Monastyrskyy, Nick V Grishin
CASP13 target classification into tertiary structure prediction categories. Proteins 87 (12) (2019)
Andriy Kryshtafovych, Sony Malhotra, Bohdan Monastyrskyy, Tristan Cragnolini, Agnel-Praveen Joseph, Wah Chiu, Andriy Kryshtafovych
Cryo-electron microscopy targets in CASP13: Overview and evaluation of results. Proteins 87 (12) (2019)
J Eduardo Fajardo, Rojan Shrestha, Nelson Gil, Adam Belsom, Silvia N Crivelli, Cezary Czaplewski, Krzysztof Fidelis, Sergei Grudinin, Mikhail Karasikov, Agnieszka S Karczyńska, Andriy Kryshtafovych, Alexander Leitner, Adam Liwo, Emilia A Lubecka, Bohdan Monastyrskyy, Guillaume Pagès, Juri Rappsilber, Adam K Sieradzan, Celina Sikorska, Esben Trabjerg, Andras Fiser
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins 87 (12) (2019)
Rosalba Lepore, Andriy Kryshtafovych, Markus Alahuhta, Harshul A Veraszto, Yannick J Bomble, Joshua C Bufton, Alex N Bullock, Cody Caba, Hongnan Cao, Owen R Davies, Ambroise Desfosses, Matthew Dunne, Krzysztof Fidelis, Celia W Goulding, Manickam Gurusaran, Irina Gutsche, Christopher J Harding, Marcus D Hartmann, Christopher S Hayes, Andrzej Joachimiak, Petr G Leiman, Peter Loppnau, Andrew L Lovering, Vladimir V Lunin, Karolina Michalska, Ignacio Mir-Sanchis, A K Mitra, John Moult, George N Phillips, Daniel M Pinkas, Phoebe A Rice, Yufeng Tong, Maya Topf, Jonathan D Walton, Torsten Schwede
Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins 87 (12) (2019)
Tristan I Croll, Massimo D Sammito, Andriy Kryshtafovych, Randy J Read
Evaluation of template-based modeling in CASP13. Proteins 87 (12) (2019)
Dmytro Guzenko, Aleix Lafita, Bohdan Monastyrskyy, Andriy Kryshtafovych, Jose M Duarte
Assessment of protein assembly prediction in CASP13. Proteins 87 (12) (2019)
Randy J Read, Massimo D Sammito, Andriy Kryshtafovych, Tristan I Croll
Evaluation of model refinement in CASP13. Proteins 87 (12) (2019)
Jonghun Won, Minkyung Baek, Bohdan Monastyrskyy, Andriy Kryshtafovych, Chaok Seok
Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning. Proteins 87 (12) (2019)
Rojan Shrestha, Eduardo Fajardo, Nelson Gil, Krzysztof Fidelis, Andriy Kryshtafovych, Bohdan Monastyrskyy, Andras Fiser
Assessing the accuracy of contact predictions in CASP13. Proteins 87 (12) (2019)
Andriy Kryshtafovych, Torsten Schwede, Andriy Kryshtafovych, Krzysztof Fidelis, John Moult
Critical assessment of methods of protein structure prediction (CASP)-Round XIII. Proteins 87 (12) (2019)
Greg L Hura, Curtis D Hodge, Daniel Rosenberg, Dmytro Guzenko, Jose M Duarte, Bohdan Monastyrskyy, Sergei Grudinin, Andriy Kryshtafovych, John A Tainer, Krzysztof Fidelis, Susan E Tsutakawa
Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences. Proteins 87 (12) (2019)
Tadeusz L Ogorzalek, Greg L Hura, Adam Belsom, Kathryn H Burnett, Andriy Kryshtafovych, John A Tainer, Juri Rappsilber, Susan E Tsutakawa, Krzysztof Fidelis
Small angle X-ray scattering and cross-linking for data assisted protein structure prediction in CASP 12 with prospects for improved accuracy. Proteins (2018)
Andriy Kryshtafovych, Reinhard Albrecht, Arnaud Baslé, Pedro Bule, Alessandro T Caputo, Ana Luísa Carvalho, Kinlin L Chao, Ron Diskin, Krzysztof Fidelis, Carlos M G A Fontes, Folmer Fredslund, Harry J Gilbert, Celia W Goulding, Marcus D Hartmann, Christopher S Hayes, Osnat Herzberg, Johan C Hill, Andrzej Joachimiak, Gert-Wieland Kohring, Roman I Koning, Leila Lo Leggio, Marco Mangiagalli, Karolina Michalska, John Moult, Shabir Najmudin, Marco Nardini, Valentina Nardone, Didier Ndeh, Thanh-Hong Nguyen, Guido Pintacuda, Sandra Postel, Mark J van Raaij, Pietro Roversi, Amir Shimon, Abhimanyu K Singh, Eric John Sundberg, Kaspars Tars, Nicole Zitzmann, Torsten Schwede
Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016). Proteins (2017)
John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Torsten Schwede
A tribute to Anna Tramontano (1957-2017). Proteins (2017)
Jörg J Schaarschmidt, Bohdan Monastyrskyy, Andriy Kryshtafovych, Alexandre M J J Bonvin
Assessment of contact predictions in CASP12: Co-evolution and deep learning coming of age. Proteins (2017)
Luciano Andrés Abriata, Giorgio E Tamò, Bohdan Monastyrskyy, Andriy Kryshtafovych, Matteo Dal Peraro
Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods. Proteins (2017)
Aleix Lafita, Spencer E Bliven, Andriy Kryshtafovych, Martino Bertoni, Bohdan Monastyrskyy, Jose M Duarte, Torsten Schwede, Guido Capitani
Assessment of protein assembly prediction in CASP12. Proteins (2017)
Andriy Kryshtafovych, Bohdan Monastyrskyy, Krzysztof Fidelis, John Moult, Torsten Schwede, Anna Tramontano
Evaluation of the template-based modeling in CASP12. Proteins (2017)
Luciano Andrés Abriata, Lisa N Kinch, Giorgio E Tamò, Bohdan Monastyrskyy, Andriy Kryshtafovych, Matteo Dal Peraro
Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi-automated metrics. Proteins (2017)
Andriy Kryshtafovych, Bohdan Monastyrskyy, Krzysztof Fidelis, Torsten Schwede, Anna Tramontano
Assessment of model accuracy estimations in CASP12. Proteins (2017)
Ladislav Hovan, Vladimiras Oleinikovas, Havva Yalinca, Andriy Kryshtafovych, Giorgio Saladino, Francesco Luigi Gervasio
Assessment of the model refinement category in CASP12. Proteins (2017)
John Moult, Krzysztof Fidelis, Andriy Kryshtafovych, Torsten Schwede, Anna Tramontano
Critical assessment of methods of protein structure prediction (CASP)-Round XII. Proteins (2017)

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Andriy Kryshtafovych