Feng Cheng

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 30

Top Topics

Dna Methylation

Gene Expression

Arabidopsis Thaliana

Top Venues

Nature genetics

The Plant journal : for cell and molecular biology

Horticulture research

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang, Shumin Chen, Lingkui Zhang, Yinqing Yang, Qi Tang, Johan Bucher, Xuelin Wang, Limei Yang, Mu Zhuang, Kang Zhang, Honghao Lv, Guusje Bonnema, Yang-Yong Zhang, Feng Cheng
Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea. Nature genetics 56 (3) (2024)
Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang, Shumin Chen, Lingkui Zhang, Yinqing Yang, Qi Tang, Johan Bucher, Xuelin Wang, Limei Yang, Mu Zhuang, Kang Zhang, Honghao Lv, Guusje Bonnema, Yang-Yong Zhang, Feng Cheng
Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea. Nature genetics 56 (3) (2024)
Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang, Shumin Chen, Lingkui Zhang, Yinqing Yang, Qi Tang, Johan Bucher, Xuelin Wang, Limei Yang, Mu Zhuang, Kang Zhang, Honghao Lv, Guusje Bonnema, Yang-Yong Zhang, Feng Cheng
Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea. Nature genetics 56 (3) (2024)
Hongbing She, Zhiyuan Liu, Zhaosheng Xu, Helong Zhang, Jian Wu, Feng Cheng, Xiaowu Wang, Wei Qian
Pan-genome analysis of 13 Spinacia accessions reveals structural variations associated with sex chromosome evolution and domestication traits in spinach. Plant biotechnology journal (2024)
Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang, Shumin Chen, Lingkui Zhang, Yinqing Yang, Qi Tang, Johan Bucher, Xuelin Wang, Limei Yang, Mu Zhuang, Kang Zhang, Honghao Lv, Guusje Bonnema, Yang-Yong Zhang, Feng Cheng
Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea. Nature genetics (2024)
Chengcheng Cai, Yinqing Yang, Lei Zhang, Yinan Cui, Jian Wu, Jianli Liang, Xing Li, Lingkui Zhang, Xin Zhang, Yiyue Zhang, Zhongwei Guo, Shumin Chen, Kang Zhang, Michael Freeling, Xiaowu Wang, Feng Cheng
Regional Active Transcription Associates with Homoeologous Exchange Breakpoints in Synthetic Brassica Tetraploids. Plant physiology (2024)
Zhongwei Guo, Kang Zhang, Chengcheng Cai, Xing Li, Lingkui Zhang, Yinqing Yang, Xiang Wang, Shumin Chen, Lei Zhang, Feng Cheng
Deep learning can predict subgenome dominance in ancient but not in neo/synthetic polyploidized genomes. The Plant journal : for cell and molecular biology (2024)
Hongbing She, Zhiyuan Liu, Zhaosheng Xu, Helong Zhang, Jian Wu, Xiaowu Wang, Feng Cheng, Deborah Charlesworth, Wei Qian
Insights into spinach domestication from genome sequences of two wild spinach progenitors, Spinacia turkestanica and Spinacia tetrandra. The New phytologist (2024)
Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang, Shumin Chen, Lingkui Zhang, Yinqing Yang, Qi Tang, Johan Bucher, Xuelin Wang, Limei Yang, Mu Zhuang, Kang Zhang, Honghao Lv, Guusje Bonnema, Yang-Yong Zhang, Feng Cheng
Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea. Nature genetics (2024)
Hongbing She, Zhiyuan Liu, Zhaosheng Xu, Helong Zhang, Jian Wu, Xiaowu Wang, Feng Cheng, Deborah Charlesworth, Wei Qian
Insights into spinach domestication from genome sequences of two wild spinach progenitors, Spinacia turkestanica and Spinacia tetrandra. The New phytologist 243 (1) (2024)
Xing Li, Yong Wang, Chengcheng Cai, Jialei Ji, Fengqing Han, Lei Zhang, Shumin Chen, Lingkui Zhang, Yinqing Yang, Qi Tang, Johan Bucher, Xuelin Wang, Limei Yang, Mu Zhuang, Kang Zhang, Honghao Lv, Guusje Bonnema, Yang-Yong Zhang, Feng Cheng
Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea. Nature genetics 56 (3) (2024)
Yongbo Liu, Yi Zhou, Feng Cheng, Renchao Zhou, Yinqing Yang, Yanchang Wang, Xingtan Zhang, Douglas E Soltis, Nengwen Xiao, Zhanjun Quan, Junsheng Li
Chromosome-level genome of putative autohexaploid Actinidia deliciosa provides insights into polyploidisation and evolution. The Plant journal : for cell and molecular biology 118 (1) (2023)
Hongbing She, Zhiyuan Liu, Shufen Li, Zhaosheng Xu, Helong Zhang, Feng Cheng, Jian Wu, Xiaowu Wang, Chuanliang Deng, Deborah Charlesworth, Wu-Jun Gao, Wei Qian
Evolution of the spinach sex-linked region within a rarely recombining pericentromeric region. Plant physiology (2023)
Yile Huang, Xinyi Guo, Kang Zhang, Terezie M Mandakova, Feng Cheng, Martin A Lysak
The meso-octoploid Heliophila variabilis genome sheds a new light on the impact of polyploidization and diploidization on the diversity of the Cape flora. The Plant journal : for cell and molecular biology (2023)
Yongbo Liu, Yi Zhou, Feng Cheng, Renchao Zhou, Yinqing Yang, Yanchang Wang, Xingtan Zhang, Douglas E Soltis, Nengwen Xiao, Zhanjun Quan, Junsheng Li
Chromosome-level genome of putative autohexaploid Actinidia deliciosa provides insights into polyploidisation and evolution. The Plant journal : for cell and molecular biology 118 (1) (2023)
Yongbo Liu, Yi Zhou, Feng Cheng, Renchao Zhou, Yinqing Yang, Yanchang Wang, Xingtan Zhang, Douglas E Soltis, Nengwen Xiao, Zhanjun Quan, Junsheng Li
Chromosome-level genome of putative autohexaploid Actinidia deliciosa provides insights into polyploidisation and evolution. The Plant journal : for cell and molecular biology (2023)
Kang Zhang, Lingkui Zhang, Yinan Cui, Yinqing Yang, Jian Wu, Jianli Liang, Xing Li, Xin Zhang, Yiyue Zhang, Zhongwei Guo, Lei Zhang, Shumin Chen, Jue Ruan, Michael Freeling, Xiaowu Wang, Feng Cheng
The lack of negative association between TE load and subgenome dominance in synthesized Brassica allotetraploids. Proceedings of the National Academy of Sciences of the United States of America 120 (42) (2023)
Peng Wu, Lingkui Zhang, Kang Zhang, Yulai Yin, Ailian Liu, Yue Zhu, Yu Fu, Fangfang Sun, Shuping Zhao, Kai Feng, Xuewen Xu, Xuehao Chen, Feng Cheng, LiangJun Li
The adaptive evolution of Euryale ferox to the aquatic environment through paleo-hexaploidization. The Plant journal : for cell and molecular biology 110 (3) (2022)
Kang Zhang, Yinqing Yang, Jian Wu, Jianli Liang, Shumin Chen, Lei Zhang, Honghao Lv, Xiaona Yin, Xin Zhang, Yiyue Zhang, Lingkui Zhang, Yangyong Zhang, Michael Freeling, Xiaowu Wang, Feng Cheng
A cluster of transcripts identifies a transition stage initiating leafy head growth in heading morphotypes of Brassica. The Plant journal : for cell and molecular biology 110 (3) (2022)
Yuanyuan Zhang, Jianli Liang, Xu Cai, Haixu Chen, Jian Wu, Runmao Lin, Feng Cheng, Xiaowu Wang
Divergence of three BRX homoeologs in Brassica rapa and its effect on leaf morphology. Horticulture research 8 (1) (2021)
Mingliang Jiang, Zongxiang Zhan, Haiyan Li, Xiangshu Dong, Feng Cheng, Zhongyun Piao
Brassica rapa orphan genes largely affect soluble sugar metabolism. Horticulture research 7 (1) (2020)
Xin Zhang, Kang Zhang, Jian Wu, Ning Guo, Jianli Liang, Xiaowu Wang, Feng Cheng
QTL-Seq and Sequence Assembly Rapidly Mapped the Gene BrMYBL2.1 for the Purple Trait in Brassica rapa. Scientific reports 10 (1) (2020)
Weifeng Xu, Qian Zhang, Wei Yuan, Feiyun Xu, Mehtab Muhammad Aslam, Rui Miao, Ying Li, Qianwen Wang, Xing Li, Xin Zhang, Kang Zhang, Tianyu Xia, Feng Cheng
The genome evolution and low-phosphorus adaptation in white lupin. Nature communications 11 (1) (2020)
Kun Lu, Lijuan Wei, Xiaolong Li, Yuntong Wang, Jian Wu, Miao Liu, Chao Zhang, Zhiyou Chen, Zhongchun Xiao, Hongju Jian, Feng Cheng, Kai Zhang, Hai Du, Xinchao Cheng, Cunming Qu, Wei Qian, Liezhao Liu, Rui Wang, Qingyuan Zou, Jiamin Ying, Xingfu Xu, Jiaqing Mei, Ying Liang, You-Rong Chai, Zhanglin Tang, Huafang Wan, Yu Ni, Yajun He, Na Lin, Yonghai Fan, Wei Sun, Nan-Nan Li, Gang Zhou, Hongkun Zheng, Xiaowu Wang, Andrew H Paterson, Jiana Li
Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement. Nature communications 10 (1) (2019)
Zheng Zheng, Ziqi Sun, Yuanjin Fang, Feiyan Qi, Hua Liu, Lijuan Miao, Pei Du, Lei Shi, Wei Gao, Suoyi Han, Wenzhao Dong, Fengshou Tang, Feng Cheng, Haiyan Hu, Bingyan Huang, Xinyou Zhang
Genetic Diversity, Population Structure, and Botanical Variety of 320 Global Peanut Accessions Revealed Through Tunable Genotyping-by-Sequencing. Scientific reports 8 (1) (2018)
Lei Zhang, Xu Cai, Jian Wu, Min Liu, Stefan Grob, Feng Cheng, Jianli Liang, Chengcheng Cai, Zhiyuan Liu, Bo Liu, Fan Wang, Song Li, Fuyan Liu, Xuming Li, Lin Cheng, Wencai Yang, Mai-He Li, Ueli Grossniklaus, Hongkun Zheng, Xiaowu Wang
Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies. Horticulture research 5 (2018)
Feng Cheng, Jian Wu, Xu Cai, Jianli Liang, Michael Freeling, Xiaowu Wang
Gene retention, fractionation and subgenome differences in polyploid plants. Nature plants 4 (5) (2018)
Feng Cheng, Rifei Sun, Xilin Hou, Hongkun Zheng, Fenglan Zhang, Yangyong Zhang, Bo Liu, Jianli Liang, Mu Zhuang, Yunxia Liu, Dongyuan Liu, Xiaobo Wang, Pingxia Li, Yumei Liu, Ke Lin, Johan Bucher, Ningwen Zhang, Yan Wang, Hui Wang, Jie Deng, Yongcui Liao, Keyun Wei, Xueming Zhang, Lixia Fu, Yunyan Hu, Jisheng Liu, Chengcheng Cai, Shujiang Zhang, Shifan Zhang, Fei Li, Hui Zhang, Jifang Zhang, Ning Guo, Zhiyuan Liu, Jin Liu, Chao Sun, Yuan Ma, Haijiao Zhang, Yang Cui, Micheal R Freeling, Theo Borm, Guusje Bonnema, Jian Wu, Xiaowu Wang
Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea. Nature genetics 48 (10) (2016)
Feng Cheng, Jian Wu, Chengcheng Cai, Lixia Fu, Jianli Liang, Theo Borm, Mu Zhuang, Yangyong Zhang, Fenglan Zhang, Guusje Bonnema, Xiaowu Wang
Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection. Scientific data 3 (2016)
Jinghua Yang, Dongyuan Liu, Xiaowu Wang, Changmian Ji, Feng Cheng, Baoning Liu, Zhongyuan Hu, Sheng Chen, Deepak Pental, Youhui Ju, Pu Yao, Xuming Li, Kun Xie, Jianhui Zhang, Jianlin Wang, Fan Liu, Weiwei Ma, Jannat Shopan, Hongkun Zheng, Sally A Mackenzie, Mingfang Zhang
The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection. Nature genetics 48 (10) (2016)