Fengfeng Zhou

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 48

Top Topics

Top Venues

Scientific reports

Interdisciplinary sciences, computational life sciences

Analytical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Ran Zheng, Rui Su, Yusi Fan, Fan Xing, Keke Huang, Fei Yan, Huanwen Chen, Botong Liu, Laiping Fang, Yechao Du, Fengfeng Zhou, Daguang Wang, Shouhua Feng
Machine Learning-Based Integrated Multiomics Characterization of Colorectal Cancer Reveals Distinctive Metabolic Signatures. Analytical chemistry 96 (21) (2024)
Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang, Kewei Li, Lan Huang, Fengfeng Zhou
MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning. Bioinformatics (Oxford, England) 40 (4) (2024)
Ran Zheng, Rui Su, Yusi Fan, Fan Xing, Keke Huang, Fei Yan, Huanwen Chen, Botong Liu, Laiping Fang, Yechao Du, Fengfeng Zhou, Daguang Wang, Shouhua Feng
Machine Learning-Based Integrated Multiomics Characterization of Colorectal Cancer Reveals Distinctive Metabolic Signatures. Analytical chemistry (2024)
Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang, Kewei Li, Lan Huang, Fengfeng Zhou
MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning. Bioinformatics (Oxford, England) 40 (4) (2024)
Ran Zheng, Rui Su, Yusi Fan, Fan Xing, Keke Huang, Fei Yan, Huanwen Chen, Botong Liu, Laiping Fang, Yechao Du, Fengfeng Zhou, Daguang Wang, Shouhua Feng
Machine Learning-Based Integrated Multiomics Characterization of Colorectal Cancer Reveals Distinctive Metabolic Signatures. Analytical chemistry 96 (21) (2024)
Ruihao Xin, Qian Cheng, Xiaohang Chi, Xin Feng, Hang Zhang, Yueying Wang, Meiyu Duan, Tunyang Xie, Xiaonan Song, Qiong Yu, Yusi Fan, Lan Huang, Fengfeng Zhou
Computational Characterization of Undifferentially Expressed Genes with Altered Transcription Regulation in Lung Cancer. Genes 14 (12) (2023)
Xiaoying Lv, Xue Li, Shihong Chen, Gongyou Zhang, Kewei Li, Yueying Wang, Meiyu Duan, Fengfeng Zhou, Hongmei Liu
Transcriptional Dysregulations of Seven Non-Differentially Expressed Genes as Biomarkers of Metastatic Colon Cancer. Genes 14 (6) (2023)
Ruihao Xin, Qian Cheng, Xiaohang Chi, Xin Feng, Hang Zhang, Yueying Wang, Meiyu Duan, Tunyang Xie, Xiaonan Song, Qiong Yu, Yusi Fan, Lan Huang, Fengfeng Zhou
Computational Characterization of Undifferentially Expressed Genes with Altered Transcription Regulation in Lung Cancer. Genes 14 (12) (2023)
Ruihao Xin, Xin Feng, Hang Zhang, Yueying Wang, Meiyu Duan, Tunyang Xie, Lin Dong, Qiong Yu, Lan Huang, Fengfeng Zhou
Seven non-differentially expressed 'dark biomarkers' show transcriptional dysregulation in chronic lymphocytic leukemia. Personalized medicine (2023)
Ruihao Xin, Qian Cheng, Xiaohang Chi, Xin Feng, Hang Zhang, Yueying Wang, Meiyu Duan, Tunyang Xie, Xiaonan Song, Qiong Yu, Yusi Fan, Lan Huang, Fengfeng Zhou
Computational Characterization of Undifferentially Expressed Genes with Altered Transcription Regulation in Lung Cancer. Genes 14 (12) (2023)
Xiaoying Lv, Xue Li, Shihong Chen, Gongyou Zhang, Kewei Li, Yueying Wang, Meiyu Duan, Fengfeng Zhou, Hongmei Liu
Transcriptional Dysregulations of Seven Non-Differentially Expressed Genes as Biomarkers of Metastatic Colon Cancer. Genes 14 (6) (2023)
Xue Li, Xiaoying Lv, Haijun Li, Gongyou Zhang, Yaohang Long, Kewei Li, Yusi Fan, Dawei Jin, Fengfeng Zhou, Hongmei Liu
Undifferentially Expressed CXXC5 as a Transcriptionally Regulatory Biomarker of Breast Cancer. Advanced biology (2023)
Xiaoying Lv, Xue Li, Shihong Chen, Gongyou Zhang, Kewei Li, Yueying Wang, Meiyu Duan, Fengfeng Zhou, Hongmei Liu
Transcriptional Dysregulations of Seven Non-Differentially Expressed Genes as Biomarkers of Metastatic Colon Cancer. Genes 14 (6) (2023)
Xiaoying Lv, Xue Li, Shihong Chen, Gongyou Zhang, Kewei Li, Yueying Wang, Meiyu Duan, Fengfeng Zhou, Hongmei Liu
Transcriptional Dysregulations of Seven Non-Differentially Expressed Genes as Biomarkers of Metastatic Colon Cancer. Genes 14 (6) (2023)
Meiyu Duan, Yueying Wang, Dong Zhao, Hongmei Liu, Gongyou Zhang, Kewei Li, Haotian Zhang, Lan Huang, Ruochi Zhang, Fengfeng Zhou
Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis. Briefings in bioinformatics (2023)
Shuai Liu, Yusi Fan, Meiyu Duan, Yueying Wang, Guoxiong Su, Yanjiao Ren, Lan Huang, Fengfeng Zhou
AcneGrader: An ensemble pruning of the deep learning base models to grade acne. Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) 28 (5) (2022)
Yaqi Zhang, Gancheng Zhu, Kewei Li, Fei Li, Lan Huang, Meiyu Duan, Fengfeng Zhou
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction. Briefings in bioinformatics 23 (5) (2022)
Daiguo Deng, Zengrong Lei, Xiaobin Hong, Ruochi Zhang, Fengfeng Zhou
Describe Molecules by a Heterogeneous Graph Neural Network with Transformer-like Attention for Supervised Property Predictions. ACS omega 7 (4) (2022)
Qian Wang, Meiyu Duan, Yusi Fan, Shuai Liu, Yanjiao Ren, Lan Huang, Fengfeng Zhou
Transforming OMIC features for classification using siamese convolutional networks. Journal of bioinformatics and computational biology 20 (3) (2022)
Shuai Liu, Yusi Fan, Kewei Li, Haotian Zhang, Xi Wang, Ruofei Ju, Lan Huang, Meiyu Duan, Fengfeng Zhou
Integration of lncRNAs, Protein-Coding Genes and Pathology Images for Detecting Metastatic Melanoma. Genes 13 (10) (2022)
Zhiqiang Sha, Daan van Rooij, Evdokia Anagnostou, Celso Arango, Guillaume Auzias, Marlene Behrmann, Boris C Bernhardt, Sven Bölte, Geraldo F Busatto, Sara Calderoni, Rosa Calvo, Eileen Daly, Christine Deruelle, Meiyu Duan, Fabio Luis de Souza Duran, Sarah Durston, Christine Ecker, Stefan Ehrlich, Damien Fair, Jennifer Fedor, Jacqueline Fitzgerald, Dorothea L Floris, Barbara Franke, Christine Margarete Freitag, Louise Gallagher, David C Glahn, Shlomi Haar, Liesbeth Hoekstra, Neda Jahanshad, Maria Jalbrzikowski, Joost Janssen, Joseph A King, Luisa Lazaro, Beatriz Luna, Jane McGrath, Sarah E Medland, Filippo Muratori, Declan G M Murphy, Janina Neufeld, Kirsten O'Hearn, Bob Oranje, Mara Parellada, Jose C Pariente, Merel C Postema, Karl Lundin Remnelius, Alessandra Retico, Pedro Gomes Penteado Rosa, Katya Rubia, Devon Shook, Kristiina Tammimies, Margot J Taylor, Michela Tosetti, Gregory L Wallace, Fengfeng Zhou, Paul M Thompson, Simon E Fisher, Jan K Buitelaar, Clyde Francks
Subtly altered topological asymmetry of brain structural covariance networks in autism spectrum disorder across 43 datasets from the ENIGMA consortium. Molecular psychiatry 27 (4) (2022)
Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiao-Jian Wang, Fengfeng Zhou
Correction to "XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties". Journal of chemical information and modeling 61 (9) (2021)
Yueying Wang, Shuai Liu, Zhao Wang, Yusi Fan, Jingxuan Huang, Lan Huang, Zhijun Li, Xinwei Li, Mengdi Jin, Qiong Yu, Fengfeng Zhou
A Machine Learning-Based Investigation of Gender-Specific Prognosis of Lung Cancers. Medicina (Kaunas, Lithuania) 57 (2) (2021)
Merel C Postema, Daan van Rooij, Evdokia Anagnostou, Celso Arango, Guillaume Auzias, Marlene Behrmann, Geraldo Busatto Filho, Sara Calderoni, Rosa Calvo, Eileen Daly, Christine Deruelle, Adriana Di Martino, Ilan Dinstein, Fabio Luis de Souza Duran, Sarah Durston, Christine Ecker, Stefan Ehrlich, Damien A Fair, Jennifer Fedor, Xin Feng, Jackie Fitzgerald, Dorothea L Floris, Christine Margarete Freitag, Louise Gallagher, David C Glahn, Ilaria Gori, Shlomi Haar, Liesbeth Hoekstra, Neda Jahanshad, Maria Jalbrzikowski, Joost Janssen, Joseph A King, Xiang Zhen Kong, Luisa Lazaro, Jason P Lerch, Beatriz Luna, Mauricio M Martinho, Jane McGrath, Sarah E Medland, Filippo Muratori, Clodagh M Murphy, Declan G M Murphy, Kirsten O'Hearn, Bob Oranje, Mara Parellada, Olga Puig, Alessandra Retico, Pedro Rosa, Katya Rubia, Devon Shook, Margot J Taylor, Michela Tosetti, Gregory L Wallace, Fengfeng Zhou, Paul M Thompson, Simon E Fisher, Jan K Buitelaar, Clyde Francks
Author Correction: Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Nature communications 12 (1) (2021)
Xuechen Mu, Yueying Wang, Meiyu Duan, Shuai Liu, Fei Li, Xiuli Wang, Kai Zhang, Lan Huang, Fengfeng Zhou
A Novel Position-Specific Encoding Algorithm (SeqPose) of Nucleotide Sequences and Its Application for Detecting Enhancers. International journal of molecular sciences 22 (6) (2021)
Quewang Liu, Yueying Wang, Meiyu Duan, Yusi Fan, Xingyuan Pan, Shuai Liu, Qiong Yu, Lan Huang, Fengfeng Zhou
Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma. Diagnostics (Basel, Switzerland) 11 (2) (2021)
Jinpu Cai, Yuyang Xu, Wen Zhang, Shiying Ding, Yuewei Sun, Jingyi Lyu, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou
A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear. Briefings in bioinformatics 22 (4) (2021)
Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiao-Jian Wang, Fengfeng Zhou
XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties. Journal of chemical information and modeling 61 (6) (2021)
Yuanyuan Han, Lan Huang, Fengfeng Zhou
Zoo: Selecting Transcriptomic and Methylomic Biomarkers by Ensembling Animal-Inspired Swarm Intelligence Feature Selection Algorithms. Genes 12 (11) (2021)
Shuai Liu, Zheng Chen, Huahui Zhou, Kunlin He, Meiyu Duan, Qichen Zheng, Pengcheng Xiong, Lan Huang, Qiong Yu, Guoxiong Su, Fengfeng Zhou
DiaMole: Mole Detection and Segmentation Software for Mobile Phone Skin Images. Journal of healthcare engineering 2021 (2021)
Chao Feng, Shufen Liu, Hao Zhang, Renchu Guan, Dan Li, Fengfeng Zhou, Yanchun Liang, Xiaoyue Feng
Dimension Reduction and Clustering Models for Single-Cell RNA Sequencing Data: A Comparative Study. International journal of molecular sciences 21 (6) (2020)
Jialiang Li, Zhaomin Yao, Meiyu Duan, Shuai Liu, Fei Li, Haiyang Zhu, Zhiqiang Xia, Lan Huang, Fengfeng Zhou
MuscNet, a Weighted Voting Model of Multi-Source Connectivity Networks to Predict Mild Cognitive Impairment Using Resting-State Functional MRI. IEEE access : practical innovations, open solutions 8 (2020)
Ruochi Zhang, Zhehao Guo, Yue Sun, Qi Lu, Zijian Xu, Zhaomin Yao, Meiyu Duan, Shuai Liu, Yanjiao Ren, Lan Huang, Fengfeng Zhou
COVID19XrayNet: A Two-Step Transfer Learning Model for the COVID-19 Detecting Problem Based on a Limited Number of Chest X-Ray Images. Interdisciplinary sciences, computational life sciences 12 (4) (2020)
Yexian Zhang, Chaorong Chen, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou
BioDog, biomarker detection for improving identification power of breast cancer histologic grade in methylomics. Epigenomics 11 (15) (2019)
Xiaofeng Dai, Rong Ma, Xijiang Zhao, Fengfeng Zhou
Epigenetic profiles capturing breast cancer stemness for triple negative breast cancer control. Epigenomics 11 (16) (2019)
Merel C Postema, Daan van Rooij, Evdokia Anagnostou, Celso Arango, Guillaume Auzias, Marlene Behrmann, Geraldo Busatto Filho, Sara Calderoni, Rosa Calvo, Eileen Daly, Christine Deruelle, Adriana Di Martino, Ilan Dinstein, Fabio Luis de Souza Duran, Sarah Durston, Christine Ecker, Stefan Ehrlich, Damien A Fair, Jennifer Fedor, Xin Feng, Jackie Fitzgerald, Dorothea L Floris, Christine Margarete Freitag, Louise Gallagher, David C Glahn, Ilaria Gori, Shlomi Haar, Liesbeth Hoekstra, Neda Jahanshad, Maria Jalbrzikowski, Joost Janssen, Joseph A King, Xiang Zhen Kong, Luisa Lazaro, Jason P Lerch, Beatriz Luna, Mauricio M Martinho, Jane McGrath, Sarah E Medland, Filippo Muratori, Clodagh M Murphy, Declan G M Murphy, Kirsten O'Hearn, Bob Oranje, Mara Parellada, Olga Puig, Alessandra Retico, Pedro Rosa, Katya Rubia, Devon Shook, Margot J Taylor, Michela Tosetti, Gregory L Wallace, Fengfeng Zhou, Paul M Thompson, Simon E Fisher, Jan K Buitelaar, Clyde Francks
Altered structural brain asymmetry in autism spectrum disorder in a study of 54 datasets. Nature communications 10 (1) (2019)
Xin Feng, Xubing Hao, Ruihao Xin, Xiaoqian Gao, Minge Liu, Fei Li, Yubo Wang, Ruoyao Shi, Shishun Zhao, Fengfeng Zhou
Detecting Methylomic Biomarkers of Pediatric Autism in the Peripheral Blood Leukocytes. Interdisciplinary sciences, computational life sciences 11 (2) (2019)
Yan Wang, Sen Yang, Jing Zhao, Wei Du, Yanchun Liang, Cankun Wang, Fengfeng Zhou, Yuan Tian, Qin Ma
Using Machine Learning to Measure Relatedness Between Genes: A Multi-Features Model. Scientific reports 9 (1) (2019)
Renchu Guan, Xu Wang, Mary Qu Yang, Yu Zhang, Fengfeng Zhou, Chen Yang, Yanchun Liang
Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways. Scientific reports 8 (1) (2018)
Jiamei Liu, Cheng Xu, Weifeng Yang, Yayun Shu, Weiwei Zheng, Fengfeng Zhou
Author Correction: Multiple similarly effective solutions exist for biomedical feature selection and classification problems. Scientific reports 8 (1) (2018)
Yinda Zhang, Shuhan Yang, Yang Liu, Yexian Zhang, Bingfeng Han, Fengfeng Zhou
Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals. Sensors (Basel, Switzerland) 18 (5) (2018)
Renchu Guan, Xu Wang, Mary Qu Yang, Yu Zhang, Fengfeng Zhou, Chen Yang, Yanchun Liang
Author Correction: Multi-label Deep Learning for Gene Function Annotation in Cancer Pathways. Scientific reports 8 (1) (2018)
Ruochi Zhang, Ruixue Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng, Xin Feng, Fengfeng Zhou
pyHIVE, a health-related image visualization and engineering system using Python. BMC bioinformatics 19 (1) (2018)
Jiamei Liu, Cheng Xu, Weifeng Yang, Yayun Shu, Weiwei Zheng, Fengfeng Zhou
Publisher Correction: Multiple similarly effective solutions exist for biomedical feature selection and classification problems. Scientific reports 8 (1) (2018)
Yuting Ye, Ruochi Zhang, Weiwei Zheng, Shuai Liu, Fengfeng Zhou
RIFS: a randomly restarted incremental feature selection algorithm. Scientific reports 7 (1) (2017)
Jiamei Liu, Cheng Xu, Weifeng Yang, Yayun Shu, Weiwei Zheng, Fengfeng Zhou
Multiple similarly effective solutions exist for biomedical feature selection and classification problems. Scientific reports 7 (1) (2017)
Pu Wang, Ruiquan Ge, Xuan Xiao, Yunpeng Cai, Guoqing Wang, Fengfeng Zhou
Rectified-Linear-Unit-Based Deep Learning for Biomedical Multi-label Data. Interdisciplinary sciences, computational life sciences 9 (3) (2016)
Guoqin Mai, Ruiquan Ge, Guoquan Sun, Qinghan Meng, Fengfeng Zhou
A Comprehensive Curation Shows the Dynamic Evolutionary Patterns of Prokaryotic CRISPRs. BioMed research international 2016 (2016)
Manli Zhou, Youxi Luo, Guoquan Sun, Guoqin Mai, Fengfeng Zhou
Constraint programming based biomarker optimization. BioMed research international 2015 (2015)