BMC bioinformatics

Keyphrases

Publications

volume 25, number 1, 2024

Ali Hakem Alsaeedi, Haider Hameed R Al-Mahmood, Zainab Fahad Alnaseri, Mohammad R Aziz, Dhiah Al-Shammary, Ayman Ibaida, Khandakar Ahmed
Fractal feature selection model for enhancing high-dimensional biological problems. BMC bioinformatics 25 (1) (2024)
Lasse Meyer, Nils Eling, Bernd Bodenmiller
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data. BMC bioinformatics 25 (1) (2024)
Xue-Qin Chen, Jie Ma, Di Xu, Zuo-Lin Xiang
Correction: Comprehensive analysis of KLF2 as a prognostic biomarker associated with fibrosis and immune infiltration in advanced hepatocellular carcinoma. BMC bioinformatics 25 (1) (2024)
Lixuan Mu, Jiangning Song, Tatsuya Akutsu, Tomoya Mori
DiCleave: a deep learning model for predicting human Dicer cleavage sites. BMC bioinformatics 25 (1) (2024)
Ali Hakem Alsaeedi, Haider Hameed R Al-Mahmood, Zainab Fahad Alnaseri, Mohammad R Aziz, Dhiah Al-Shammary, Ayman Ibaida, Khandakar Ahmed
Fractal feature selection model for enhancing high-dimensional biological problems. BMC bioinformatics 25 (1) (2024)
Jiahao Wei, Linzhang Lu, Tie Shen
Predicting drug-protein interactions by preserving the graph information of multi source data. BMC bioinformatics 25 (1) (2024)
Eli J Draizen, John Readey, Cameron Mura, Philip E Bourne
Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data. BMC bioinformatics 25 (1) (2024)
Jiahao Wei, Linzhang Lu, Tie Shen
Predicting drug-protein interactions by preserving the graph information of multi source data. BMC bioinformatics 25 (1) (2024)
Eli J Draizen, John Readey, Cameron Mura, Philip E Bourne
Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data. BMC bioinformatics 25 (1) (2024)
Qian Liu, Qiang Hu, Song Liu, Alan Hutson, Martin Morgan
ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management. BMC bioinformatics 25 (1) (2024)
Kimberly T To, Judy Strickland, Emily Reinke, Alexandre Borrel, Jim Truax, Heather Maldonado, Dave Allen, Nicole Kleinstreuer
Computational application of internationally harmonized defined approaches to skin sensitization: DASS App. BMC bioinformatics 25 (1) (2024)
Madiha Shabbir, Aziz Mithani
Roast: a tool for reference-free optimization of supertranscriptome assemblies. BMC bioinformatics 25 (1) (2024)
Madiha Shabbir, Aziz Mithani
Roast: a tool for reference-free optimization of supertranscriptome assemblies. BMC bioinformatics 25 (1) (2024)
Pedro A Saa, Sebastian Zapararte, Christopher C Drovandi, Lars K Nielsen
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models. BMC bioinformatics 25 (1) (2024)
Lasse Meyer, Nils Eling, Bernd Bodenmiller
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data. BMC bioinformatics 25 (1) (2024)
Kimberly T To, Judy Strickland, Emily Reinke, Alexandre Borrel, Jim Truax, Heather Maldonado, Dave Allen, Nicole Kleinstreuer
Computational application of internationally harmonized defined approaches to skin sensitization: DASS App. BMC bioinformatics 25 (1) (2024)
Madiha Shabbir, Aziz Mithani
Roast: a tool for reference-free optimization of supertranscriptome assemblies. BMC bioinformatics 25 (1) (2024)
Pedro A Saa, Sebastian Zapararte, Christopher C Drovandi, Lars K Nielsen
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models. BMC bioinformatics 25 (1) (2024)
Xu Zhang, Ya Su, Andrew N Lane, Arnold J Stromberg, Teresa W M Fan, Chi Wang
Correction: Bayesian kinetic modeling for tracer-based metabolomic data. BMC bioinformatics 25 (1) (2024)
Ali Hakem Alsaeedi, Haider Hameed R Al-Mahmood, Zainab Fahad Alnaseri, Mohammad R Aziz, Dhiah Al-Shammary, Ayman Ibaida, Khandakar Ahmed
Fractal feature selection model for enhancing high-dimensional biological problems. BMC bioinformatics 25 (1) (2024)
Lixuan Mu, Jiangning Song, Tatsuya Akutsu, Tomoya Mori
DiCleave: a deep learning model for predicting human Dicer cleavage sites. BMC bioinformatics 25 (1) (2024)
Lixuan Mu, Jiangning Song, Tatsuya Akutsu, Tomoya Mori
DiCleave: a deep learning model for predicting human Dicer cleavage sites. BMC bioinformatics 25 (1) (2024)
Eli J Draizen, John Readey, Cameron Mura, Philip E Bourne
Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data. BMC bioinformatics 25 (1) (2024)
Jiahao Wei, Linzhang Lu, Tie Shen
Predicting drug-protein interactions by preserving the graph information of multi source data. BMC bioinformatics 25 (1) (2024)
Qian Liu, Qiang Hu, Song Liu, Alan Hutson, Martin Morgan
ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management. BMC bioinformatics 25 (1) (2024)
Xu Zhang, Ya Su, Andrew N Lane, Arnold J Stromberg, Teresa W M Fan, Chi Wang
Correction: Bayesian kinetic modeling for tracer-based metabolomic data. BMC bioinformatics 25 (1) (2024)
Kimberly T To, Judy Strickland, Emily Reinke, Alexandre Borrel, Jim Truax, Heather Maldonado, Dave Allen, Nicole Kleinstreuer
Computational application of internationally harmonized defined approaches to skin sensitization: DASS App. BMC bioinformatics 25 (1) (2024)
Yong-Jian Guan, Chang-Qing Yu, Li-Ping Li, Zhu-Hong You, Meng-Meng Wei, Xin-Fei Wang, Chen Yang, Lu-Xiang Guo
MHESMMR: a multilevel model for predicting the regulation of miRNAs expression by small molecules. BMC bioinformatics 25 (1) (2024)
Lasse Meyer, Nils Eling, Bernd Bodenmiller
cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data. BMC bioinformatics 25 (1) (2024)
Dengju Yao, Bailin Li, Xiaojuan Zhan, Xiaorong Zhan, Liyang Yu
GCNFORMER: graph convolutional network and transformer for predicting lncRNA-disease associations. BMC bioinformatics 25 (1) (2024)
Yong-Jian Guan, Chang-Qing Yu, Li-Ping Li, Zhu-Hong You, Meng-Meng Wei, Xin-Fei Wang, Chen Yang, Lu-Xiang Guo
MHESMMR: a multilevel model for predicting the regulation of miRNAs expression by small molecules. BMC bioinformatics 25 (1) (2024)
Dengju Yao, Bailin Li, Xiaojuan Zhan, Xiaorong Zhan, Liyang Yu
GCNFORMER: graph convolutional network and transformer for predicting lncRNA-disease associations. BMC bioinformatics 25 (1) (2024)
Edwin Alvarez-Mamani, Reinhard Dechant, César A Beltran-Castañón, Alfredo J Ibáñez
Graph embedding on mass spectrometry- and sequencing-based biomedical data. BMC bioinformatics 25 (1) (2024)
Eduardo N Castanho, João P Lobo, Rui Henriques, Sara C Madeira
Correction: G-bic: generating synthetic benchmarks for biclustering. BMC bioinformatics 25 (1) (2024)
Yong-Jian Guan, Chang-Qing Yu, Li-Ping Li, Zhu-Hong You, Meng-Meng Wei, Xin-Fei Wang, Chen Yang, Lu-Xiang Guo
MHESMMR: a multilevel model for predicting the regulation of miRNAs expression by small molecules. BMC bioinformatics 25 (1) (2024)
Dengju Yao, Bailin Li, Xiaojuan Zhan, Xiaorong Zhan, Liyang Yu
GCNFORMER: graph convolutional network and transformer for predicting lncRNA-disease associations. BMC bioinformatics 25 (1) (2024)
Pedro A Saa, Sebastian Zapararte, Christopher C Drovandi, Lars K Nielsen
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models. BMC bioinformatics 25 (1) (2024)
Qian Liu, Qiang Hu, Song Liu, Alan Hutson, Martin Morgan
ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management. BMC bioinformatics 25 (1) (2024)
Edwin Alvarez-Mamani, Reinhard Dechant, César A Beltran-Castañón, Alfredo J Ibáñez
Graph embedding on mass spectrometry- and sequencing-based biomedical data. BMC bioinformatics 25 (1) (2024)
Edwin Alvarez-Mamani, Reinhard Dechant, César A Beltran-Castañón, Alfredo J Ibáñez
Graph embedding on mass spectrometry- and sequencing-based biomedical data. BMC bioinformatics 25 (1) (2024)
Sahar Mohseni-Takalloo, Hadis Mohseni, Hassan Mozaffari-Khosravi, Masoud Mirzaei, Mahdieh Hosseinzadeh
The effect of data balancing approaches on the prediction of metabolic syndrome using non-invasive parameters based on random forest. BMC bioinformatics 25 (1) (2024)
Emma E Kim, Chloe Soohyun Jang, Hakin Kim, Buhm Han
PASTRY: achieving balanced power for detecting risk and protective minor alleles in meta-analysis of association studies with overlapping subjects. BMC bioinformatics 25 (1) (2024)

volume 25, number Suppl 1, 2024

Dong Wang, Jie Li, Edwin Wang, Yadong Wang
DVA: predicting the functional impact of single nucleotide missense variants. BMC bioinformatics 25 (Suppl 1) (2024)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. BMC bioinformatics 25 (Suppl 1) (2024)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. BMC bioinformatics 25 (Suppl 1) (2024)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. BMC bioinformatics 25 (Suppl 1) (2024)
Rafael Peres da Silva, Chayaporn Suphavilai, Niranjan Nagarajan
MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes. BMC bioinformatics 25 (Suppl 1) (2024)
Dong Wang, Jie Li, Edwin Wang, Yadong Wang
DVA: predicting the functional impact of single nucleotide missense variants. BMC bioinformatics 25 (Suppl 1) (2024)
Dong Wang, Jie Li, Edwin Wang, Yadong Wang
DVA: predicting the functional impact of single nucleotide missense variants. BMC bioinformatics 25 (Suppl 1) (2024)

volume 25, number Suppl 2, 2024

Lan-Yun Chang, Ting-Yi Hao, Wei-Jie Wang, Chun-Yu Lin
Inference of single-cell network using mutual information for scRNA-seq data analysis. BMC bioinformatics 25 (Suppl 2) (2024)