Filip Stefaniak

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 15

Top Venues

Nucleic acids research

PLoS computational biology

Proteins

Scientific reports

International Institute of Molecular and Cell Biology in Warsaw

This page only lists publications with an associated author ORCID identifier.

Affiliation History

International Institute of Molecular and Cell Biology in Warsaw May 01 2014

Poland

Researcher :: Laboratory of Bioinformatics and Protein Engineering

Celon Pharma Jan 15 2010 - May 01 2014

Poland

Chemo/bio informatican :: Medicinal Chemisty unit

Celon Pharma Mar 17 2008 - Jan 15 2010

Poland

Project leader: anticancer drugs :: Medicinal Chemistry Unit

Publications

S Naeim Moafinejad, Belisa R H de Aquino, Michał J Boniecki, Iswarya P N Pandaranadar Jeyeram, Grigory Nikolaev, Marcin Magnus, Masoud Amiri Farsani, Nagendar Goud Badepally, Tomasz K Wirecki, Filip Stefaniak, Janusz M Bujnicki
SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories. Nucleic acids research (2024)
S Naeim Moafinejad, Belisa R H de Aquino, Michał J Boniecki, Iswarya P N Pandaranadar Jeyeram, Grigory Nikolaev, Marcin Magnus, Masoud Amiri Farsani, Nagendar Goud Badepally, Tomasz K Wirecki, Filip Stefaniak, Janusz M Bujnicki
SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories. Nucleic acids research 52 (W1) (2024)
S Naeim Moafinejad, Belisa R H de Aquino, Michał J Boniecki, Iswarya P N Pandaranadar Jeyeram, Grigory Nikolaev, Marcin Magnus, Masoud Amiri Farsani, Nagendar Goud Badepally, Tomasz K Wirecki, Filip Stefaniak, Janusz M Bujnicki
SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories. Nucleic acids research 52 (W1) (2024)
S Naeim Moafinejad, Belisa R H de Aquino, Michał J Boniecki, Iswarya P N Pandaranadar Jeyeram, Grigory Nikolaev, Marcin Magnus, Masoud Amiri Farsani, Nagendar Goud Badepally, Tomasz K Wirecki, Filip Stefaniak, Janusz M Bujnicki
SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories. Nucleic acids research 52 (W1) (2024)
S Naeim Moafinejad, Belisa R H de Aquino, Michał J Boniecki, Iswarya P N Pandaranadar Jeyeram, Grigory Nikolaev, Marcin Magnus, Masoud Amiri Farsani, Nagendar Goud Badepally, Tomasz K Wirecki, Filip Stefaniak, Janusz M Bujnicki
SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories. Nucleic acids research (2024)
Natalia A Szulc, Filip Stefaniak, Małgorzata Piechota, Anna Soszyńska, Gabriela Piórkowska, Andrea Cappannini, Janusz M Bujnicki, Chiara Maniaci, Wojciech Pokrzywa
DEGRONOPEDIA: a web server for proteome-wide inspection of degrons. Nucleic acids research (2024)
Natalia A Szulc, Filip Stefaniak, Małgorzata Piechota, Anna Soszyńska, Gabriela Piórkowska, Andrea Cappannini, Janusz M Bujnicki, Chiara Maniaci, Wojciech Pokrzywa
DEGRONOPEDIA: a web server for proteome-wide inspection of degrons. Nucleic acids research 52 (W1) (2024)
Natalia A Szulc, Filip Stefaniak, Małgorzata Piechota, Anna Soszyńska, Gabriela Piórkowska, Andrea Cappannini, Janusz M Bujnicki, Chiara Maniaci, Wojciech Pokrzywa
DEGRONOPEDIA: a web server for proteome-wide inspection of degrons. Nucleic acids research 52 (W1) (2024)
Andrea Cappannini, Angana Ray, Elzbieta Purta, Sunandan Mukherjee, Pietro Boccaletto, S Naeim Moafinejad, Antony Lechner, Charles Barchet, Bruno P Klaholz, Filip Stefaniak, Janusz M Bujnicki
MODOMICS: a database of RNA modifications and related information. 2023 update. Nucleic acids research (2023)
Eugene F Baulin, Sunandan Mukherjee, S Naeim Moafinejad, Tomasz K Wirecki, Nagendar Goud Badepally, Farhang Jaryani, Filip Stefaniak, Masoud Amiri Farsani, Angana Ray, Tales Rocha de Moura, Janusz M Bujnicki
RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints. Proteins (2023)
Natalia A Szulc, Zuzanna Mackiewicz, Janusz M Bujnicki, Filip Stefaniak
fingeRNAt-A novel tool for high-throughput analysis of nucleic acid-ligand interactions. PLoS computational biology 18 (6) (2022)
Mariola Stypik, Marcin Zagozda, Stanisław Michałek, Barbara Dymek, Daria Zdżalik-Bielecka, Maciej Dziachan, Nina Orłowska, Paweł Gunerka, Paweł Turowski, Joanna Hucz-Kalitowska, Aleksandra Stańczak, Paulina Stańczak, Krzysztof Mulewski, Damian Smuga, Filip Stefaniak, Lidia Gurba-Bryśkiewicz, Arkadiusz Leniak, Zbigniew Ochal, Mateusz Mach, Karolina Dzwonek, Monika Lamparska-Przybysz, Krzysztof Dubiel, Maciej Wieczorek
Design, Synthesis, and Development of pyrazolo[1,5- a ]pyrimidine Derivatives as a Novel Series of Selective PI3K δ Inhibitors: Part I-Indole Derivatives. Pharmaceuticals (Basel, Switzerland) 15 (8) (2022)
Pietro Boccaletto, Filip Stefaniak, Angana Ray, Andrea Cappannini, Sunandan Mukherjee, Elzbieta Purta, Małgorzata Kurkowska, Niloofar Shirvanizadeh, Eliana Destefanis, Paula Groza, Gülben Avşar, Antonia Romitelli, Pınar Pir, Erik Dassi, Silvestro Giovanni Conticello, Francesca Aguilo, Janusz M Bujnicki
MODOMICS: a database of RNA modification pathways. 2021 update. Nucleic acids research (2021)
Filip Stefaniak, Janusz M Bujnicki
AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses. PLoS computational biology 17 (2) (2021)
Paweł Mitkowski, Elżbieta Jagielska, Elżbieta Nowak, Janusz M Bujnicki, Filip Stefaniak, Dorota Niedziałek, Matthias Bochtler, Izabela Sabała
Structural bases of peptidoglycan recognition by lysostaphin SH3b domain. Scientific reports 9 (1) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Filip Stefaniak