Sunandan Mukherjee

Scopus Author ID Loop profile ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 17

Top Venues

Nucleic acids research

RNA (New York, N.Y.)

Proteins

Scientific reports

International Institute of Molecular and Cell Biology

Indian Institute of Technology Kharagpur (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

International Institute of Molecular and Cell Biology Jul 01 2018

Poland

Research Associates :: Laboratory of Bioinformatics and Protein Engineering

Indian Institute of Technology Kharagpur Jan 05 2012 - Jun 18 2018

India

Research Scholar :: Department of Biotechnology

Education History

Indian Institute of Technology Kharagpur Jan 01 2012 - Jun 18 2018

India

PHD :: Biotechnology

Publications

Tales Rocha de Moura, Elzbieta Purta, Agata Bernat, Eva M Martín-Cuevas, Małgorzata Kurkowska, Eugene F Baulin, Sunandan Mukherjee, Jakub Nowak, Artur P Biela, Michal Rawski, Sebastian Glatt, Fernando Moreno-Herrero, Janusz M Bujnicki
Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic acids research (2024)
Tales Rocha de Moura, Elzbieta Purta, Agata Bernat, Eva M Martín-Cuevas, Małgorzata Kurkowska, Eugene F Baulin, Sunandan Mukherjee, Jakub Nowak, Artur P Biela, Michal Rawski, Sebastian Glatt, Fernando Moreno-Herrero, Janusz M Bujnicki
Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic acids research 52 (6) (2024)
Tales Rocha de Moura, Elzbieta Purta, Agata Bernat, Eva M Martín-Cuevas, Małgorzata Kurkowska, Eugene F Baulin, Sunandan Mukherjee, Jakub Nowak, Artur P Biela, Michal Rawski, Sebastian Glatt, Fernando Moreno-Herrero, Janusz M Bujnicki
Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic acids research 52 (6) (2024)
Tales Rocha de Moura, Elzbieta Purta, Agata Bernat, Eva M Martín-Cuevas, Małgorzata Kurkowska, Eugene F Baulin, Sunandan Mukherjee, Jakub Nowak, Artur P Biela, Michal Rawski, Sebastian Glatt, Fernando Moreno-Herrero, Janusz M Bujnicki
Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. Nucleic acids research 52 (6) (2024)
Xinyu Jia, Zhiling Pan, Yang Yuan, Bingnan Luo, Yongbo Luo, Sunandan Mukherjee, Guowen Jia, Liu Liu, Xiaobin Ling, Xiting Yang, Zhichao Miao, Yanping Qian, Janusz M Bujnicki, Kelei Zhao, Zhaoming Su
Structural basis of sRNA RsmZ regulation of Pseudomonas aeruginosa virulence. Cell research (2023)
Andrea Cappannini, Angana Ray, Elzbieta Purta, Sunandan Mukherjee, Pietro Boccaletto, S Naeim Moafinejad, Antony Lechner, Charles Barchet, Bruno P Klaholz, Filip Stefaniak, Janusz M Bujnicki
MODOMICS: a database of RNA modifications and related information. 2023 update. Nucleic acids research (2023)
Eugene F Baulin, Sunandan Mukherjee, S Naeim Moafinejad, Tomasz K Wirecki, Nagendar Goud Badepally, Farhang Jaryani, Filip Stefaniak, Masoud Amiri Farsani, Angana Ray, Tales Rocha de Moura, Janusz M Bujnicki
RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints. Proteins (2023)
Andrea Cappannini, Kevin Mosca, Sunandan Mukherjee, S Naeim Moafinejad, Richard R Sinden, Veronique Arluison, Janusz Bujnicki, Frank Wien
NACDDB: Nucleic Acid Circular Dichroism Database. Nucleic acids research (2022)
Julita Gumna, Maciej Antczak, Ryszard W Adamiak, Janusz M Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzyńska, Tomasz K Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Zhichiao Miao, Marta Szachniuk, Agnieszka Rybarczyk
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models. International journal of molecular sciences 23 (17) (2022)
Chandran Nithin, Sunandan Mukherjee, Jolly Basak, Ranjit Prasad Bahadur
NCodR: A multi-class support vector machine classification to distinguish non-coding RNAs in Viridiplantae. Quantitative plant biology 3 (2022)
Swagata Mukhopadhyay, Tulika Das, Madhuparna Bose, Chetan Kumar Jain, Mayukh Chakraborty, Sunandan Mukherjee, Kumari Shikha, Amit K Das, Agneyo Ganguly
Residues at the interface between zinc binding and winged helix domains of human RECQ1 play a significant role in DNA strand annealing activity. Nucleic acids research 49 (20) (2021)
Arne Kuepper, Niall M McLoughlin, Saskia Neubacher, Alejandro Yeste-Vázquez, Estel Collado Camps, Chandran Nithin, Sunandan Mukherjee, Lucas Bethge, Janusz M Bujnicki, Roland Brock, Stefan Heinrichs, Tom N Grossmann
Constrained peptides mimic a viral suppressor of RNA silencing. Nucleic acids research (2021)
Pietro Boccaletto, Filip Stefaniak, Angana Ray, Andrea Cappannini, Sunandan Mukherjee, Elzbieta Purta, Małgorzata Kurkowska, Niloofar Shirvanizadeh, Eliana Destefanis, Paula Groza, Gülben Avşar, Antonia Romitelli, Pınar Pir, Erik Dassi, Silvestro Giovanni Conticello, Francesca Aguilo, Janusz M Bujnicki
MODOMICS: a database of RNA modification pathways. 2021 update. Nucleic acids research (2021)
Almudena Ponce-Salvatierra, Astha Joshi, Katarzyna Merdas, Chandran Nithin, Pritha Ghosh, Sunandan Mukherjee, Janusz M Bujnicki
Computational modeling of RNA 3D structure based on experimental data. Bioscience reports 39 (2) (2019)
Chandran Nithin, Sunandan Mukherjee, Ranjit Prasad Bahadur
A structure-based model for the prediction of protein-RNA binding affinity. RNA (New York, N.Y.) 25 (12) (2019)
Sunandan Mukherjee, Chandran Nithin, Yasaswi Divakaruni, Ranjit Prasad Bahadur
Dissecting water binding sites at protein-protein interfaces: a lesson from the atomic structures in the Protein Data Bank. Journal of biomolecular structure & dynamics 37 (5) (2018)
Sunandan Mukherjee, Ranjit Prasad Bahadur
An account of solvent accessibility in protein-RNA recognition. Scientific reports 8 (1) (2018)

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Publication Activity (10 Years)

Top Topics

Top Venues

Sunandan Mukherjee