Hamed S Najafabadi (Hamed Najafabadi)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 31

Top Topics

Genome Wide Association

Transcription Factor

Intellectual Disability

Top Venues

Nature communications

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Dilan Rasool, Audrey Burban, Ahmad Sharanek, Ariel Madrigal, Jinghua Hu, Keqin Yan, Dianbo Qu, Anne Kathrin Voss, Ruth S Slack, Tim Thomas, Azad Bonni, David J Picketts, Vahab D Soleimani, Hamed S Najafabadi, Arezu Jahani-Asl
PHF6-mediated transcriptional control of NSC via Ephrin receptors is impaired in the intellectual disability syndrome BFLS. EMBO reports 25 (3) (2024)
Dilan Rasool, Audrey Burban, Ahmad Sharanek, Ariel Madrigal, Jinghua Hu, Keqin Yan, Dianbo Qu, Anne Kathrin Voss, Ruth S Slack, Tim Thomas, Azad Bonni, David J Picketts, Vahab D Soleimani, Hamed S Najafabadi, Arezu Jahani-Asl
PHF6-mediated transcriptional control of NSC via Ephrin receptors is impaired in the intellectual disability syndrome BFLS. EMBO reports 25 (3) (2024)
Wenmin Zhang, Tianyuan Lu, Robert Sladek, Yue Li, Hamed S Najafabadi, Josée Dupuis
SharePro: an accurate and efficient genetic colocalization method accounting for multiple causal signals. Bioinformatics (Oxford, England) 40 (5) (2024)
Wenmin Zhang, Tianyuan Lu, Robert Sladek, Yue Li, Hamed S Najafabadi, Josée Dupuis
SharePro: an accurate and efficient genetic colocalization method accounting for multiple causal signals. Bioinformatics (Oxford, England) 40 (5) (2024)
Dilan Rasool, Audrey Burban, Ahmad Sharanek, Ariel Madrigal, Jinghua Hu, Keqin Yan, Dianbo Qu, Anne Kathrin Voss, Ruth S Slack, Tim Thomas, Azad Bonni, David J Picketts, Vahab D Soleimani, Hamed S Najafabadi, Arezu Jahani-Asl
PHF6-mediated transcriptional control of NSC via Ephrin receptors is impaired in the intellectual disability syndrome BFLS. EMBO reports 25 (3) (2024)
Dilan Rasool, Audrey Burban, Ahmad Sharanek, Ariel Madrigal, Jinghua Hu, Keqin Yan, Dianbo Qu, Anne Kathrin Voss, Ruth S Slack, Tim Thomas, Azad Bonni, David J Picketts, Vahab D Soleimani, Hamed S Najafabadi, Arezu Jahani-Asl
PHF6-mediated transcriptional control of NSC via Ephrin receptors is impaired in the intellectual disability syndrome BFLS. EMBO reports (2024)
Michael Apostolides, Benedict Choi, Albertas Navickas, Ali Saberi, Larisa M Soto, Hani Goodarzi, Hamed S Najafabadi
Accurate isoform quantification by joint short- and long-read RNA-sequencing. bioRxiv : the preprint server for biology (2024)
Ariel Madrigal, Tianyuan Lu, Larisa M Soto, Hamed S Najafabadi
A unified model for interpretable latent embedding of multi-sample, multi-condition single-cell data. Nature communications 15 (1) (2024)
Ariel Madrigal, Tianyuan Lu, Larisa M Soto, Hamed S Najafabadi
A unified model for interpretable latent embedding of multi-sample, multi-condition single-cell data. Nature communications 15 (1) (2024)
Michael Apostolides, Benedict Choi, Albertas Navickas, Ali Saberi, Larisa M Soto, Hani Goodarzi, Hamed S Najafabadi
Accurate isoform quantification by joint short- and long-read RNA-sequencing. bioRxiv : the preprint server for biology (2024)
Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M Blackburn, Aldo Hernández-Corchado, Gabrielle Perron, Tianyuan Lu, Adrien Osakwe, Jiannis Ragoussis, Colin Crist, Theodore J Perkins, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment. Nature communications 14 (1) (2023)
Wenmin Zhang, Hamed S Najafabadi, Yue Li
SparsePro: An efficient fine-mapping method integrating summary statistics and functional annotations. PLoS genetics 19 (12) (2023)
Wenmin Zhang, Hamed S Najafabadi, Yue Li
SparsePro: An efficient fine-mapping method integrating summary statistics and functional annotations. PLoS genetics 19 (12) (2023)
Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M Blackburn, Aldo Hernández-Corchado, Gabrielle Perron, Tianyuan Lu, Adrien Osakwe, Jiannis Ragoussis, Colin Crist, Theodore J Perkins, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment. Nature communications 14 (1) (2023)
Wenmin Zhang, Hamed S Najafabadi, Yue Li
SparsePro: An efficient fine-mapping method integrating summary statistics and functional annotations. PLoS genetics 19 (12) (2023)
Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M Blackburn, Aldo Hernández-Corchado, Gabrielle Perron, Tianyuan Lu, Adrien Osakwe, Jiannis Ragoussis, Colin Crist, Theodore J Perkins, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment. Nature communications 14 (1) (2023)
Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M Blackburn, Aldo Hernández-Corchado, Gabrielle Perron, Tianyuan Lu, Adrien Osakwe, Jiannis Ragoussis, Colin Crist, Theodore J Perkins, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment. Nature communications 14 (1) (2023)
Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M Blackburn, Aldo Hernández-Corchado, Gabrielle Perron, Tianyuan Lu, Adrien Osakwe, Jiannis Ragoussis, Colin Crist, Theodore J Perkins, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment. Nature communications 14 (1) (2023)
Wenmin Zhang, Hamed S Najafabadi, Yue Li
SparsePro: An efficient fine-mapping method integrating summary statistics and functional annotations. PLoS genetics 19 (12) (2023)
Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M Blackburn, Aldo Hernández-Corchado, Gabrielle Perron, Tianyuan Lu, Adrien Osakwe, Jiannis Ragoussis, Colin Crist, Theodore J Perkins, Arezu Jahani-Asl, Hamed S Najafabadi, Vahab D Soleimani
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment. Nature communications 14 (1) (2023)
Dan Moldoveanu, LeeAnn Ramsay, Mathieu Lajoie, Luke Anderson-Trocme, Marine Lingrand, Diana Berry, Lucas J M Perus, Yuhong Wei, Cleber Moraes, Rached Alkallas, Shivshankari Rajkumar, Dongmei Zuo, Matthew Dankner, Eric Hongbo Xu, Nicholas R Bertos, Hamed S Najafabadi, Simon Gravel, Santiago Costantino, Martin J Richer, Amanda W Lund, Sonia V Del Rincon, Alan Spatz, Wilson H Miller, Rahima Jamal, Réjean Lapointe, Anne-Marie Mes-Masson, Simon Turcotte, Kevin Petrecca, Sinziana Dumitra, Ari-Nareg Meguerditchian, Keith Richardson, Francine Tremblay, Beatrice Wang, May Chergui, Marie-Christine Guiot, Kevin Watters, John Stagg, Abdel Razaq Ahmad A Alyasin, Catalin Mihalcioiu, Sarkis Meterissian
Spatially mapping the immune landscape of melanoma using imaging mass cytometry. Science immunology 7 (70) (2022)
Gabrielle Perron, Pouria Jandaghi, Elham Moslemi, Tamiko Nishimura, Maryam Rajaee, Rached Alkallas, Tianyuan Lu, Yasser Riazalhosseini, Hamed S Najafabadi
Pan-cancer analysis of mRNA stability for decoding tumour post-transcriptional programs. Communications biology 5 (1) (2022)
Aldo Hernandez-Corchado, Hamed S Najafabadi
Toward a base-resolution panorama of the in vivo impact of cytosine methylation on transcription factor binding. Genome biology 23 (1) (2022)
Lisa Fish, Matvei Khoroshkin, Albertas Navickas, Kristle Garcia, Bruce Culbertson, Benjamin Hänisch, Steven Zhang, Hoang C B Nguyen, Larisa M Soto, Maria Dermit, Faraz K Mardakheh, Henrik Molina, Claudio R Alarcón, Hamed S Najafabadi, Hani Goodarzi
A prometastatic splicing program regulated by SNRPA1 interactions with structured RNA elements. Science (New York, N.Y.) 372 (6543) (2021)
Charles P Couturier, Shamini Ayyadhury, Phuong U Le, Javad Nadaf, Jean Monlong, Gabriele Riva, Redouane Allache, Salma Baig, Xiaohua Yan, Mathieu Bourgey, Changseok Lee, Yu Chang David Wang, Voon Wee Yong, Marie-Christine Guiot, Hamed S Najafabadi, Bratislav Misic, Jack Antel, Guillaume Bourque, Jiannis Ragoussis, Kevin Petrecca
Author Correction: Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy. Nature communications 11 (1) (2020)
Rick Farouni, Haig Hugo Vrej Djambazian, Lorenzo E Ferri, Jiannis Ragoussis, Hamed S Najafabadi
Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing. Nature communications 11 (1) (2020)
Rached Alkallas, Mathieu Lajoie, Dan Moldoveanu, Karen Vo Hoang, Philippe Lefrançois, Marine Lingrand, Mozhdeh Ahanfeshar-Adams, Kevin Watters, Alan Spatz, Jonathan H Zippin, Hamed S Najafabadi, Ian R Watson
Multi-omic analysis reveals significantly mutated genes and DDX3X as a sex-specific tumor suppressor in cutaneous melanoma. Nature cancer 1 (6) (2020)
Charles P Couturier, Shamini Ayyadhury, Phuong U Le, Javad Nadaf, Jean Monlong, Gabriele Riva, Redouane Allache, Salma Baig, Xiaohua Yan, Mathieu Bourgey, Changseok Lee, Yu Chang David Wang, Voon Wee Yong, Marie-Christine Guiot, Hamed S Najafabadi, Bratislav Misic, Jack Antel, Guillaume Bourque, Jiannis Ragoussis, Kevin Petrecca
Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy. Nature communications 11 (1) (2020)
Melissa A Buckley, Nicholas T Woods, Jonathan P Tyrer, Gustavo Mendoza-Fandiño, Kate Lawrenson, Dennis J Hazelett, Hamed S Najafabadi, Anxhela Gjyshi, Renato S Carvalho, Paulo C Lyra, Simon G Coetzee, Howard C Shen, Ally W Yang, Madalene A Earp, Susan J Ramus, Harvey Risch, Georgia Chenevix-Trench, Susan J Ramus, Catherine M Phelan, Houtan Noushmehr, Timothy R Hughes, Thomas A Sellers, Ellen L Goode, Paul D Pharoah, Simon A Gayther, Alvaro N A Monteiro, null null
Functional Analysis and Fine Mapping of the 9p22.2 Ovarian Cancer Susceptibility Locus. Cancer research 79 (3) (2018)
Rached Alkallas, Lisa Fish, Hani Goodarzi, Hamed S Najafabadi
Publisher Correction: Inference of RNA decay rate from transcriptional profiling highlights the regulatory programs of Alzheimer's disease. Nature communications 9 (1) (2018)
Rached Alkallas, Lisa Fish, Hani Goodarzi, Hamed S Najafabadi
Inference of RNA decay rate from transcriptional profiling highlights the regulatory programs of Alzheimer's disease. Nature communications 8 (1) (2017)