Herbert Levine

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 45

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Journal of the Royal Society, Interface

Science advances

Biomolecules

Rice University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Rice University Jan 01 2019

United States

Adjunct Professor :: Bioengineering

Northeastern University Jan 01 2019

United States

University Distinguished Professor :: Physics and Bioengineering

Baylor College of Medicine

United States

Adjunct Professor :: Structural and Computational Biology and Molecular Biophysics Graduate Program

Rice University Aug 01 2012 - Dec 31 2018

United States

Professor, Hasselman Chair of Bioengineering :: Bioengineering

University of California San Diego

United States

Professor :: Physics

University of California San Diego

United States

Associate Professor :: Physics

Schlumberger-Doll Research Ridgefield

United States

Member of Professional Staff

Publications

Herbert Levine, Yuhai Tu
Machine learning meets physics: A two-way street. Proceedings of the National Academy of Sciences of the United States of America 121 (27) (2024)
Ailun Wang, Xingcheng Lin, Kevin Ng Chau, José Nelson Onuchic, Herbert Levine, Jason T George
RACER-m leverages structural features for sparse T cell specificity prediction. Science advances 10 (20) (2024)
Ailun Wang, Xingcheng Lin, Kevin Ng Chau, José Nelson Onuchic, Herbert Levine, Jason T George
RACER-m leverages structural features for sparse T cell specificity prediction. Science advances 10 (20) (2024)
Herbert Levine, Yuhai Tu
Machine learning meets physics: A two-way street. Proceedings of the National Academy of Sciences of the United States of America 121 (27) (2024)
Herbert Levine, Yuhai Tu
Machine learning meets physics: A two-way street. Proceedings of the National Academy of Sciences of the United States of America 121 (27) (2024)
Sumitabha Brahmachari, Shubham Tripathi, José Nelson Onuchic, Herbert Levine
Nucleosomes play a dual role in regulating transcription dynamics. Proceedings of the National Academy of Sciences of the United States of America 121 (28) (2024)
Sumitabha Brahmachari, Shubham Tripathi, José Nelson Onuchic, Herbert Levine
Nucleosomes play a dual role in regulating transcription dynamics. Proceedings of the National Academy of Sciences of the United States of America 121 (28) (2024)
Yu-Chen Cheng, Yun Zhang, Shubham Tripathi, B V Harshavardhan, Mohit Kumar Jolly, Geoffrey Schiebinger, Herbert Levine, Thomas O McDonald, Franziska Michor
Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
Ailun Wang, Xingcheng Lin, Kevin Ng Chau, José Nelson Onuchic, Herbert Levine, Jason T George
RACER-m leverages structural features for sparse T cell specificity prediction. Science advances 10 (20) (2024)
Sumitabha Brahmachari, Shubham Tripathi, José Nelson Onuchic, Herbert Levine
Nucleosomes play a dual role in regulating transcription dynamics. Proceedings of the National Academy of Sciences of the United States of America 121 (28) (2024)
Yu-Chen Cheng, Yun Zhang, Shubham Tripathi, B V Harshavardhan, Mohit Kumar Jolly, Geoffrey Schiebinger, Herbert Levine, Thomas O McDonald, Franziska Michor
Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
Yu-Chen Cheng, Yun Zhang, Shubham Tripathi, B V Harshavardhan, Mohit Kumar Jolly, Geoffrey Schiebinger, Herbert Levine, Thomas O McDonald, Franziska Michor
Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition. Proceedings of the National Academy of Sciences of the United States of America 121 (32) (2024)
Paras Jain, Sophia Corbo, Kulsoom Mohammad, Sarthak Sahoo, Santhalakshmi Ranganathan, Jason T George, Herbert Levine, Joseph Taube, Michael Toneff, Mohit Kumar Jolly
Epigenetic memory acquired during long-term EMT induction governs the recovery to the epithelial state. Journal of the Royal Society, Interface 20 (198) (2023)
Paras Jain, Sophia Corbo, Kulsoom Mohammad, Sarthak Sahoo, Santhalakshmi Ranganathan, Jason T George, Herbert Levine, Joseph Taube, Michael Toneff, Mohit Kumar Jolly
Epigenetic memory acquired during long-term EMT induction governs the recovery to the epithelial state. Journal of the Royal Society, Interface 20 (198) (2023)
Paras Jain, Sophia Corbo, Kulsoom Mohammad, Sarthak Sahoo, Santhalakshmi Ranganathan, Jason T George, Herbert Levine, Joseph Taube, Michael Toneff, Mohit Kumar Jolly
Epigenetic memory acquired during long-term EMT induction governs the recovery to the epithelial state. Journal of the Royal Society, Interface 20 (198) (2023)
Paras Jain, Sophia Corbo, Kulsoom Mohammad, Sarthak Sahoo, Santhalakshmi Ranganathan, Jason T George, Herbert Levine, Joseph Taube, Michael Toneff, Mohit Kumar Jolly
Epigenetic memory acquired during long-term EMT induction governs the recovery to the epithelial state. Journal of the Royal Society, Interface 20 (198) (2023)
Herbert Levine, Daniel I Goldman
Physics of smart active matter: integrating active matter and control to gain insights into living systems. Soft matter (2023)
Alexander S Moffett, Youyuan Deng, Herbert Levine
Modeling the Role of Immune Cell Conversion in the Tumor-Immune Microenvironment. Bulletin of mathematical biology 85 (10) (2023)
M Ali Al-Radhawi, Shubham Tripathi, Yun Zhang, Eduardo D Sontag, Herbert Levine
Epigenetic factor competition reshapes the EMT landscape. Proceedings of the National Academy of Sciences of the United States of America 119 (42) (2022)
Shubham Tripathi, David A Kessler, Herbert Levine
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shubham Tripathi, David A Kessler, Herbert Levine
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shubham Tripathi, David A Kessler, Herbert Levine
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Wen Jia, Atchuta Srinivas Duddu, Mohit Kumar Jolly, Herbert Levine
Lack of Correlation between Landscape Geometry and Transition Rates. The journal of physical chemistry. B 126 (30) (2022)
Shubham Tripathi, Jun Hyoung Park, Shivanand Pudakalakatti, Pratip K Bhattacharya, Benny Abraham Kaipparettu, Herbert Levine
A mechanistic modeling framework reveals the key principles underlying tumor metabolism. PLoS computational biology 18 (2) (2022)
Pedram Esfahani, Herbert Levine, Mrinmoy Mukherjee, Bo Sun
Three-dimensional cancer cell migration directed by dual mechanochemical guidance. Physical review research 4 (2) (2022)
Shubham Tripathi, David A Kessler, Herbert Levine
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shubham Tripathi, David A Kessler, Herbert Levine
Minimal frustration underlies the usefulness of incomplete regulatory network models in biology. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Srinath Muralidharan, Sarthak Sahoo, Aryamaan Saha, Sanjay Chandran, Sauma Suvra Majumdar, Susmita Mandal, Herbert Levine, Mohit Kumar Jolly
Quantifying the Patterns of Metabolic Plasticity and Heterogeneity along the Epithelial-Hybrid-Mesenchymal Spectrum in Cancer. Biomolecules 12 (2) (2022)
Herbert Levine
Let the robotic games begin. Proceedings of the National Academy of Sciences of the United States of America 119 (17) (2022)
Hiroko Masuda, Kenichi Harano, Sakiko Miura, Ying Wang, Yuko Hirota, Oi Harada, Mohit Kumar Jolly, Yuki Matsunaga, Bora Lim, Anita L Wood, Napa Parinyanitikul, Hee Jin Lee, Gyungyub Gong, Jason T George, Herbert Levine, Jangsoon Lee, Xiaoping Wang, Anthony Lucci, Arvind Rao, Brock L Schweitzer, O Rayne Lawrence, Robert S Seitz, Stephan W Morris, David R Hout, Seigo Nakamura, Savitri Krishnamurthy, Naoto T Ueno
Changes in Triple-Negative Breast Cancer Molecular Subtypes in Patients Without Pathologic Complete Response After Neoadjuvant Systemic Chemotherapy. JCO precision oncology 6 (2022)
Nishant Singh, Thomas Bartol, Herbert Levine, Terrence Sejnowski, Suhita Nadkarni
Presynaptic endoplasmic reticulum regulates short-term plasticity in hippocampal synapses. Communications biology 4 (1) (2021)
Samuel A Vilchez Mercedes, Federico Bocci, Herbert Levine, José Nelson Onuchic, Mohit Kumar Jolly, Pak Kin Wong
Decoding leader cells in collective cancer invasion. Nature reviews. Cancer 21 (9) (2021)
Eial Teomy, David A Kessler, Herbert Levine
Ordered hexagonal patterns via notch-delta signaling. Physical biology 18 (6) (2021)
Mrinmoy Mukherjee, Herbert Levine
Cluster size distribution of cells disseminating from a primary tumor. PLoS computational biology 17 (11) (2021)
Jihan Kim, Yuansheng Cao, Christopher Eddy, Youyuan Deng, Herbert Levine, Wouter-Jan Rappel, Bo Sun
The mechanics and dynamics of cancer cells sensing noisy 3D contact guidance. Proceedings of the National Academy of Sciences of the United States of America 118 (10) (2021)
Grace G Bushnell, Abhijeet P Deshmukh, Petra den Hollander, Ming Luo, Rama Soundararajan, Dongya Jia, Herbert Levine, Sandurai A Mani, Max S Wicha
Breast cancer dormancy: need for clinically relevant models to address current gaps in knowledge. NPJ breast cancer 7 (1) (2021)
Juliana C Wortman, Ting-Fang He, Shawn T Solomon, Robert Z Zhang, Anthony Rosario, Roger Wang, Travis Y Tu, Daniel Schmolze, Yuan Yuan, Susan E Yost, Xuefei Li, Herbert Levine, Gurinder Atwal, Peter P Lee, Clare C Yu
Spatial distribution of B cells and lymphocyte clusters as a predictor of triple-negative breast cancer outcome. NPJ breast cancer 7 (1) (2021)
Carlos Floyd, Herbert Levine, Christopher Jarzynski, Garegin A Papoian
Understanding cytoskeletal avalanches using mechanical stability analysis. Proceedings of the National Academy of Sciences of the United States of America 118 (41) (2021)
Nishant Singh, Thomas Bartol, Herbert Levine, Terrence Sejnowski, Suhita Nadkarni
Author Correction: Presynaptic endoplasmic reticulum regulates short-term plasticity in hippocampal synapses. Communications biology 4 (1) (2021)
Dongya Jia, Jun Hyoung Park, Harsimran Kaur, Kwang Hwa Jung, Sukjin Yang, Shubham Tripathi, Madeline Galbraith, Youyuan Deng, Mohit Kumar Jolly, Benny Abraham Kaipparettu, José Nelson Onuchic, Herbert Levine
Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer. British journal of cancer 124 (12) (2021)
Abhijeet P Deshmukh, Suhas V Vasaikar, Katarzyna Tomczak, Shubham Tripathi, Petra den Hollander, Emre Arslan, Priyanka Chakraborty, Rama Soundararajan, Mohit Kumar Jolly, Kunal Rai, Herbert Levine, Sandurai A Mani
Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing. Proceedings of the National Academy of Sciences of the United States of America 118 (19) (2021)
Archana P Thankamony, Reshma Murali, Nitheesh Karthikeyan, Binitha Anu Varghese, Wee S Teo, Andrea McFarland, Daniel L Roden, Holly Holliday, Christina Valbirk Konrad, Aurelie Cazet, Eoin Dodson, Jessica Yang, Laura A Baker, Jason T George, Herbert Levine, Mohit Kumar Jolly, Alexander Swarbrick, Radhika Nair
Targeting the Id1-Kif11 Axis in Triple-Negative Breast Cancer Using Combination Therapy. Biomolecules 10 (9) (2020)
Jordan L Shivers, Jingchen Feng, Anne S G van Oosten, Herbert Levine, Paul A Janmey, Fred C MacKintosh
Compression stiffening of fibrous networks with stiff inclusions. Proceedings of the National Academy of Sciences of the United States of America 117 (35) (2020)
Xingcheng Lin, Prakash Kulkarni, Federico Bocci, Nicholas P Schafer, Susmita Roy, Min-Yeh Tsai, Yanan He, Yihong Chen, Krithika Rajagopalan, Steven M Mooney, Yu Zeng, Keith Weninger, Alex Grishaev, José N Onuchic, Herbert Levine, Peter G Wolynes, Ravi Salgia, Govindan Rangarajan, Vladimir N Uversky, John Orban, Mohit Kumar Jolly
Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level. Biomolecules 9 (2) (2019)
Ayse Nihan Kilinc, Nami Sugiyama, Ravi Kiran Reddy Kalathur, Helena Antoniadis, Huseyin Birogul, Dana Ishay-Ronen, Jason T George, Herbert Levine, Mohit Kumar Jolly, Gerhard Christofori
Histone deacetylases, Mbd3/NuRD, and Tet2 hydroxylase are crucial regulators of epithelial-mesenchymal plasticity and tumor metastasis. Oncogene 39 (7) (2019)

Herbert Levine.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Herbert Levine