Huafeng Xu

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 14

Top Topics

Structural Basis

Molecular Dynamics

Top Venues

Journal of chemical information and modeling

ACS bio & med chem Au

Journal of chemical theory and computation

Scientific reports

This page only lists publications with an associated author ORCID identifier.

Publications

Michael S Jones, Zachary A McDargh, Rafal P Wiewiora, Jesus A Izaguirre, Huafeng Xu, Andrew L Ferguson
Molecular Latent Space Simulators for Distributed and Multimolecular Trajectories. The journal of physical chemistry. A (2023)
Lieyang Chen, Yujie Wu, Chuanjie Wu, Ana Silveira, Woody Sherman, Huafeng Xu, Emilio Gallicchio
Performance and Analysis of the Alchemical Transfer Method for Binding-Free-Energy Predictions of Diverse Ligands. Journal of chemical information and modeling (2023)
Lieyang Chen, Yujie Wu, Chuanjie Wu, Ana Silveira, Woody Sherman, Huafeng Xu, Emilio Gallicchio
Performance and Analysis of the Alchemical Transfer Method for Binding-Free-Energy Predictions of Diverse Ligands. Journal of chemical information and modeling 64 (1) (2023)
Lieyang Chen, Yujie Wu, Chuanjie Wu, Ana Silveira, Woody Sherman, Huafeng Xu, Emilio Gallicchio
Performance and Analysis of the Alchemical Transfer Method for Binding-Free-Energy Predictions of Diverse Ligands. Journal of chemical information and modeling 64 (1) (2023)
Lieyang Chen, Yujie Wu, Chuanjie Wu, Ana Silveira, Woody Sherman, Huafeng Xu, Emilio Gallicchio
Performance and Analysis of the Alchemical Transfer Method for Binding-Free-Energy Predictions of Diverse Ligands. Journal of chemical information and modeling 64 (1) (2023)
Daniel J Park, Jesus Izaguirre, Rory Coffey, Huafeng Xu
Modeling the Effect of Cooperativity in Ternary Complex Formation and Targeted Protein Degradation Mediated by Heterobifunctional Degraders. ACS bio & med chem Au 3 (1) (2022)
Tom Dixon, Derek MacPherson, Barmak Mostofian, Taras Dauzhenka, Samuel D Lotz, Dwight McGee, Sharon Shechter, Utsab R Shrestha, Rafal Wiewiora, Zachary A McDargh, Fen Pei, Rajat Pal, João V Ribeiro, Tanner Wilkerson, Vipin Sachdeva, Ning Gao, Shourya Jain, Samuel Sparks, Yunxing Li, Alexander Vinitsky, Xin Zhang, Asghar M Razavi, István Kolossváry, Jason Imbriglio, Artem Evdokimov, Louise Bergeron, Wenchang Zhou, Jagat Adhikari, Benjamin Ruprecht, Alex Dickson, Huafeng Xu, Woody Sherman, Jesus A Izaguirre
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry. Nature communications 13 (1) (2022)
Huafeng Xu, Timothy Palpant, Cody Weinberger, David E Shaw
Characterizing Receptor Flexibility to Predict Mutations That Lead to Human Adaptation of Influenza Hemagglutinin. Journal of chemical theory and computation 18 (8) (2022)
Huafeng Xu
Non-Equilibrium Protein Folding and Activation by ATP-Driven Chaperones. Biomolecules 12 (6) (2022)
Daniel J Park, Jesus Izaguirre, Rory Coffey, Huafeng Xu
Modeling the Effect of Cooperativity in Ternary Complex Formation and Targeted Protein Degradation Mediated by Heterobifunctional Degraders. ACS bio & med chem Au 3 (1) (2022)
Pengfei Li, Zhijie Li, Yu Wang, Huaixia Dou, Brian K Radak, Bryce K Allen, Woody Sherman, Huafeng Xu
Precise Binding Free Energy Calculations for Multiple Molecules Using an Optimal Measurement Network of Pairwise Differences. Journal of chemical theory and computation (2021)
Tai-Sung Lee, Bryce K Allen, Timothy J Giese, Zhenyu Guo, Pengfei Li, Charles Lin, T Dwight McGee, David A Pearlman, Brian K Radak, Yujun Tao, Hsu-Chun Tsai, Huafeng Xu, Woody Sherman, Darrin M York
Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery. Journal of chemical information and modeling 60 (11) (2020)
Huafeng Xu
Optimal Measurement Network of Pairwise Differences. Journal of chemical information and modeling 59 (11) (2019)
Huafeng Xu
Cochaperones enable Hsp70 to use ATP energy to stabilize native proteins out of the folding equilibrium. Scientific reports 8 (1) (2018)