Hui Shen

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 12

Top Topics

Single Molecule

Dna Methylation

Top Venues

Nucleic acids research

Bioinformatics (Oxford, England)

Cancer research

The Journal of experimental medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Wanding Zhou, Benjamin K Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman, Ayush Semwal, Walid Abi Habib, Lyong Heo, Peter W Laird, Benjamin P Berman, Timothy J Triche, Hui Shen
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Nucleic acids research (2024)
Rachel Rae J House, James P Eapen, Hui Shen, Carrie R Graveel, Matthew R Steensma
ceas: an R package for Seahorse data analysis and visualization. Bioinformatics (Oxford, England) 40 (8) (2024)
Irem Kaymak, McLane J Watson, Brandon M Oswald, Shixin Ma, Benjamin K Johnson, Lisa M DeCamp, Batsirai M Mabvakure, Katarzyna M Luda, Eric H Ma, Kin H Lau, Zhen Fu, Brejnev Muhire, Susan M Kitchen-Goosen, Alexandra Vander Ark, Michael S Dahabieh, Bozena Samborska, Matthew Vos, Hui Shen, Zi Peng Fan, Thomas P Roddy, Gillian A Kingsbury, Cristovão M Sousa, Connie M Krawczyk, Kelsey S Williams, Ryan D Sheldon, Susan M Kaech, Dominic Guy Roy, Russell G Jones
ACLY and ACSS2 link nutrient-dependent chromatin accessibility to CD8 T cell effector responses. The Journal of experimental medicine 221 (9) (2024)
Wanding Zhou, Benjamin K Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman, Ayush Semwal, Walid Abi Habib, Lyong Heo, Peter W Laird, Benjamin P Berman, Timothy J Triche, Hui Shen
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Nucleic acids research 52 (6) (2024)
Wanding Zhou, Benjamin K Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman, Ayush Semwal, Walid Abi Habib, Lyong Heo, Peter W Laird, Benjamin P Berman, Timothy J Triche, Hui Shen
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Nucleic acids research (2024)
Rachel Rae J House, James P Eapen, Hui Shen, Carrie R Graveel, Matthew R Steensma
ceas: an R package for Seahorse data analysis and visualization. Bioinformatics (Oxford, England) 40 (8) (2024)
Rachel Rae J House, James P Eapen, Hui Shen, Carrie R Graveel, Matthew R Steensma
ceas: an R package for Seahorse data analysis and visualization. Bioinformatics (Oxford, England) 40 (8) (2024)
Wanding Zhou, Benjamin K Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman, Ayush Semwal, Walid Abi Habib, Lyong Heo, Peter W Laird, Benjamin P Berman, Timothy J Triche, Hui Shen
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Nucleic acids research 52 (6) (2024)
Wanding Zhou, Benjamin K Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman, Ayush Semwal, Walid Abi Habib, Lyong Heo, Peter W Laird, Benjamin P Berman, Timothy J Triche, Hui Shen
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Nucleic acids research 52 (6) (2024)
Ian Beddows, Huihui Fan, Karolin Heinze, Benjamin K Johnson, Anna Leonova, Janine Senz, Svetlana Djirackor, Kathleen R Cho, Celeste Leigh Pearce, David G Huntsman, Michael S Anglesio, Hui Shen
Cell state of origin impacts development of distinct endometriosis-related ovarian carcinoma histotypes. Cancer research (2023)
Hyo Sik Jang, Galen Hostetter, Alexander W MacFarlane, Zachary B Madaj, Eric A Ross, Toshinori Hinoue, Justin R Kulchycki, Ryan S Burgos, Mahvish Tafseer, R Katherine Alpaugh, Candice L Schwebel, Rutika Kokate, Daniel M Geynisman, Matthew R Zibelman, Pooja Ghatalia, Peter W Nichols, Woonbok Chung, Jozef Madzo, Noah M Hahn, David I Quinn, Jean-Pierre J Issa, Michael J Topper, Stephen B Baylin, Hui Shen, Kerry S Campbell, Peter A Jones, Elizabeth R Plimack
A Phase II Trial of Guadecitabine plus Atezolizumab in Metastatic Urothelial Carcinoma Progressing after Initial Immune Checkpoint Inhibitor Therapy. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Jacob Morrison, Julie M Koeman, Benjamin K Johnson, Kelly K Foy, Ian Beddows, Wanding Zhou, David W Chesla, Larissa L Rossell, Emily J Siegwald, Marie Adams, Hui Shen
Evaluation of whole-genome DNA methylation sequencing library preparation protocols. Epigenetics & chromatin 14 (1) (2021)