Jeffrey A Ruffolo

ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 12

Top Venues

Nature biotechnology

mAbs

Nature communications

bioRxiv : the preprint server for biology

Johns Hopkins University (PHD)

This page only lists publications with an associated author ORCID identifier.

Education History

Johns Hopkins University

United States

PHD :: Biophysics

University of Missouri

United States

BSC :: Biochemistry

University of Missouri

United States

BSC :: Electrical Engineering and Computer Science

Publications

Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins, Michael Iannotti, Giuliana Vozza, Tony Pham, Nurjahan Mehzabeen, Harini Shandilya, Keith Rickert, Rebecca Croasdale-Wood, Melissa Damschroder, Ying Fu, Andrew Dippel, Jeffrey J Gray, Gilad Kaplan
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen. mAbs 16 (1) (2024)
Jeffrey A Ruffolo, Ali Madani
Designing proteins with language models. Nature biotechnology 42 (2) (2024)
Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins, Michael Iannotti, Giuliana Vozza, Tony Pham, Nurjahan Mehzabeen, Harini Shandilya, Keith Rickert, Rebecca Croasdale-Wood, Melissa Damschroder, Ying Fu, Andrew Dippel, Jeffrey J Gray, Gilad Kaplan
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen. mAbs 16 (1) (2024)
Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins, Michael Iannotti, Giuliana Vozza, Tony Pham, Nurjahan Mehzabeen, Harini Shandilya, Keith Rickert, Rebecca Croasdale-Wood, Melissa Damschroder, Ying Fu, Andrew Dippel, Jeffrey J Gray, Gilad Kaplan
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen. mAbs 16 (1) (2024)
Jeffrey A Ruffolo, Ali Madani
Designing proteins with language models. Nature biotechnology 42 (2) (2024)
Jeffrey A Ruffolo, Ali Madani
Designing proteins with language models. Nature biotechnology 42 (2) (2024)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer. bioRxiv : the preprint server for biology (2023)
Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan, Jeffrey J Gray
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies. Nature communications 14 (1) (2023)
Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan, Jeffrey J Gray
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies. Nature communications 14 (1) (2023)
Sai Pooja Mahajan, Jeffrey A Ruffolo, Jeffrey J Gray
Contextual protein encodings from equivariant graph transformers. bioRxiv : the preprint server for biology (2023)
Deniz Akpinaroglu, Jeffrey A Ruffolo, Sai Pooja Mahajan, Jeffrey J Gray
Simultaneous prediction of antibody backbone and side-chain conformations with deep learning. PloS one 17 (6) (2022)
Jeffrey A Ruffolo, Andrew D McClellan
Modeling of lamprey reticulospinal neurons: multiple distinct parameter sets yield realistic simulations. Journal of neurophysiology 124 (3) (2020)

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Publication Activity (10 Years)

Top Topics

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Jeffrey A Ruffolo