Jeffrey J Gray

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 66

Top Venues

bioRxiv : the preprint server for biology

PLoS computational biology

Protein science : a publication of the Protein Society

Nature communications

Johns Hopkins University

University of Texas at Austin (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Johns Hopkins University

United States

Professor :: Chemical & Biomolecular Engineering

Education History

University of Texas at Austin

United States

PHD :: Chemical Engineering

Publications

Gao-Lan Zhang, Mitchell J Porter, Abduselam K Awol, Benjamin C Orsburn, Samuel W Canner, Jeffrey J Gray, Robert N O'Meally, Robert N Cole, Ronald L Schnaar
The Human Ganglioside Interactome in Live Cells Revealed Using Clickable Photoaffinity Ganglioside Probes. Journal of the American Chemical Society 146 (26) (2024)
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, Konstantin Schütze, Nathachit Limjunyawong, Daphne Chun-Che Chien, Wayne Denis Monteiro, Lee-Shin Chu, William Morgenlander, Sahana Jayaraman, Sung-Eun Jang, Jeffrey J Gray, Heng Zhu, Xinzhong Dong, Martin Steinegger, H Benjamin Larman
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides. bioRxiv : the preprint server for biology (2024)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible protein-protein docking with a multitrack iterative transformer. Protein science : a publication of the Protein Society 33 (2) (2024)
Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins, Michael Iannotti, Giuliana Vozza, Tony Pham, Nurjahan Mehzabeen, Harini Shandilya, Keith Rickert, Rebecca Croasdale-Wood, Melissa Damschroder, Ying Fu, Andrew Dippel, Jeffrey J Gray, Gilad Kaplan
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen. mAbs 16 (1) (2024)
Rituparna Samanta, Ameya Harmalkar, Priyamvada Prathima, Jeffrey J Gray
Advancing membrane-associated protein docking with improved sampling and scoring in Rosetta. bioRxiv : the preprint server for biology (2024)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible protein-protein docking with a multitrack iterative transformer. Protein science : a publication of the Protein Society 33 (2) (2024)
Rituparna Samanta, Jeffrey J Gray
Implicit model to capture electrostatic features of membrane environment. PLoS computational biology 20 (1) (2024)
Manoela Martins, Alberto M Dos Santos, Clauber H S da Costa, Samuel W Canner, Michael Chungyoun, Jeffrey J Gray, Munir Salomão Skaf, Marc Ostermeier, Rosana Goldbeck
Thermostability Enhancement of GH 62 α-l-Arabinofuranosidase by Directed Evolution and Rational Design. Journal of agricultural and food chemistry (2024)
Rituparna Samanta, Ameya Harmalkar, Priyamvada Prathima, Jeffrey J Gray
Advancing membrane-associated protein docking with improved sampling and scoring in Rosetta. bioRxiv : the preprint server for biology (2024)
Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins, Michael Iannotti, Giuliana Vozza, Tony Pham, Nurjahan Mehzabeen, Harini Shandilya, Keith Rickert, Rebecca Croasdale-Wood, Melissa Damschroder, Ying Fu, Andrew Dippel, Jeffrey J Gray, Gilad Kaplan
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen. mAbs 16 (1) (2024)
Rituparna Samanta, Jeffrey J Gray
Implicit model to capture electrostatic features of membrane environment. PLoS computational biology 20 (1) (2024)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible protein-protein docking with a multitrack iterative transformer. Protein science : a publication of the Protein Society 33 (2) (2024)
Rituparna Samanta, Jeffrey J Gray
Implicit model to capture electrostatic features of membrane environment. PLoS computational biology 20 (1) (2024)
Rituparna Samanta, Jeffrey J Gray
Implicit model to capture electrostatic features of membrane environment. PLoS computational biology 20 (1) (2024)
Mark Hutchinson, Jeffrey A Ruffolo, Nantaporn Haskins, Michael Iannotti, Giuliana Vozza, Tony Pham, Nurjahan Mehzabeen, Harini Shandilya, Keith Rickert, Rebecca Croasdale-Wood, Melissa Damschroder, Ying Fu, Andrew Dippel, Jeffrey J Gray, Gilad Kaplan
Toward enhancement of antibody thermostability and affinity by computational design in the absence of antigen. mAbs 16 (1) (2024)
Rituparna Samanta, Jeffrey J Gray
Implicit model to capture electrostatic features of membrane environment. PLoS computational biology 20 (1) (2024)
Gao-Lan Zhang, Mitchell J Porter, Abduselam K Awol, Benjamin C Orsburn, Samuel W Canner, Jeffrey J Gray, Robert N O'Meally, Robert N Cole, Ronald L Schnaar
The Human Ganglioside Interactome in Live Cells Revealed Using Clickable Photoaffinity Ganglioside Probes. Journal of the American Chemical Society (2024)
Manoela Martins, Alberto M Dos Santos, Clauber H S da Costa, Samuel W Canner, Michael Chungyoun, Jeffrey J Gray, Munir Salomão Skaf, Marc Ostermeier, Rosana Goldbeck
Thermostability Enhancement of GH 62 α-l-Arabinofuranosidase by Directed Evolution and Rational Design. Journal of agricultural and food chemistry 72 (8) (2024)
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, Konstantin Schütze, Nathachit Limjunyawong, Daphne Chun-Che Chien, Wayne Denis Monteiro, Lee-Shin Chu, William Morgenlander, Sahana Jayaraman, Sung-Eun Jang, Jeffrey J Gray, Heng Zhu, Xinzhong Dong, Martin Steinegger, H Benjamin Larman
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides. bioRxiv : the preprint server for biology (2024)
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, Konstantin Schütze, Nathachit Limjunyawong, Daphne Chun-Che Chien, Wayne Denis Monteiro, Lee-Shin Chu, William Morgenlander, Sahana Jayaraman, Sung-Eun Jang, Jeffrey J Gray, Heng Zhu, Xinzhong Dong, Martin Steinegger, H Benjamin Larman
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides. bioRxiv : the preprint server for biology (2024)
Manoela Martins, Alberto M Dos Santos, Clauber H S da Costa, Samuel W Canner, Michael Chungyoun, Jeffrey J Gray, Munir Salomão Skaf, Marc Ostermeier, Rosana Goldbeck
Thermostability Enhancement of GH 62 α-l-Arabinofuranosidase by Directed Evolution and Rational Design. Journal of agricultural and food chemistry 72 (8) (2024)
Susana Moleirinho, Yohei Kitamura, Paulo S G N Borges, Sophia Auduong, Seyda Kilic, David Deng, Nobuhiko Kanaya, David Kozono, Jing Zhou, Jeffrey J Gray, Esther Revai-Lechtich, Yanni Zhu, Khalid Shah
Fate and Efficacy of Engineered Allogeneic Stem Cells Targeting Cell Death and Proliferation Pathways in Primary and Brain Metastatic Lung Cancer. Stem cells translational medicine (2023)
Rituparna Samanta, Jeffrey J Gray
Implicit model to capture electrostatic features of membrane environment. bioRxiv : the preprint server for biology (2023)
Ameya Harmalkar, Roshan Rao, Yuxuan Richard Xie, Jonas Honer, Wibke Deisting, Jonas Anlahr, Anja Hoenig, Julia Czwikla, Eva Sienz-Widmann, Doris Rau, Austin J Rice, Timothy P Riley, Danqing Li, Hannah B Catterall, Christine E Tinberg, Jeffrey J Gray, Kathy Y Wei
Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features. mAbs 15 (1) (2023)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer. Protein science : a publication of the Protein Society (2023)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer. Protein science : a publication of the Protein Society (2023)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer. Protein science : a publication of the Protein Society (2023)
Lee-Shin Chu, Jeffrey A Ruffolo, Ameya Harmalkar, Jeffrey J Gray
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer. bioRxiv : the preprint server for biology (2023)
Samuel W Canner, Sudhanshu Shanker, Jeffrey J Gray
Structure-Based Neural Network Protein-Carbohydrate Interaction Predictions at the Residue Level. bioRxiv : the preprint server for biology (2023)
Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan, Jeffrey J Gray
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies. Nature communications 14 (1) (2023)
Ameya Harmalkar, Sergey Lyskov, Jeffrey J Gray
Reliable protein-protein docking with AlphaFold, Rosetta and replica-exchange. bioRxiv : the preprint server for biology (2023)
Jeffrey A Ruffolo, Lee-Shin Chu, Sai Pooja Mahajan, Jeffrey J Gray
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies. Nature communications 14 (1) (2023)
Ameya Harmalkar, Roshan Rao, Yuxuan Richard Xie, Jonas Honer, Wibke Deisting, Jonas Anlahr, Anja Hoenig, Julia Czwikla, Eva Sienz-Widmann, Doris Rau, Austin J Rice, Timothy P Riley, Danqing Li, Hannah B Catterall, Christine E Tinberg, Jeffrey J Gray, Kathy Y Wei
Toward generalizable prediction of antibody thermostability using machine learning on sequence and structure features. mAbs 15 (1) (2023)
Sai Pooja Mahajan, Jeffrey A Ruffolo, Jeffrey J Gray
Contextual protein encodings from equivariant graph transformers. bioRxiv : the preprint server for biology (2023)
Deniz Akpinaroglu, Jeffrey A Ruffolo, Sai Pooja Mahajan, Jeffrey J Gray
Simultaneous prediction of antibody backbone and side-chain conformations with deep learning. PloS one 17 (6) (2022)
Rebecca F Alford, Andrew Leaver-Fay, Jeliazko R Jeliazkov, Matthew J O'Meara, Frank P DiMaio, Hahnbeom Park, Maxim V Shapovalov, P Douglas Renfrew, Vikram K Mulligan, Kalli Kappel, Jason W Labonte, Michael S Pacella, Richard Bonneau, Philip Bradley, Roland L Dunbrack, Rhiju Das, David Baker, Brian Kuhlman, Tanja Kortemme, Jeffrey J Gray
Correction to "The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design". Journal of chemical theory and computation 18 (7) (2022)
Rahel Frick, Lene Støkken Høydahl, Jan Petersen, M Fleur du Pré, Shraddha Kumari, Grete Berntsen, Alisa E Dewan, Jeliazko R Jeliazkov, Kristin S Gunnarsen, Terje Frigstad, Erik S Vik, Carmen Llerena, Prof Knut E A Lundin, Sheraz Yaqub, Prof Jørgen Jahnsen, Jeffrey J Gray, Jamie Rossjohn, Ludvig M Sollid, Inger Sandlie, Geir Åge Løset
A high-affinity human TCR-like antibody detects celiac disease gluten peptide-MHC complexes and inhibits T cell activation. Science immunology 6 (62) (2022)
Ameya Harmalkar, Sai Pooja Mahajan, Jeffrey J Gray
Induced fit with replica exchange improves protein complex structure prediction. PLoS computational biology 18 (6) (2022)
Cody Krivacic, Kale Kundert, Xingjie Pan, Roland A Pache, Lin Liu, Shane O Conchúir, Jeliazko R Jeliazkov, Jeffrey J Gray, Michael C Thompson, Brian K Shoichet, Tanja Kortemme
Accurate positioning of functional residues with robotics-inspired computational protein design. Proceedings of the National Academy of Sciences of the United States of America 119 (11) (2022)
Rebecca F Alford, Rituparna Samanta, Jeffrey J Gray
Diverse Scientific Benchmarks for Implicit Membrane Energy Functions. Journal of chemical theory and computation 17 (8) (2021)
Julia Koehler Leman, Sergey Lyskov, Steven M Lewis, Jared Adolf-Bryfogle, Rebecca F Alford, Kyle A Barlow, Ziv Ben-Aharon, Daniel P Farrell, Jason S Fell, William A Hansen, Ameya Harmalkar, Jeliazko R Jeliazkov, Georg Kuenze, Justyna Dorota Kryś, Ajasja Ljubetič, Amanda L Loshbaugh, Jack Maguire, Rocco Moretti, Vikram Khipple Mulligan, Morgan L Nance, Phuong T Nguyen, Shane Ó Conchúir, Shourya S Roy Burman, Rituparna Samanta, Shannon T Smith, Frank Teets, Johanna K S Tiemann, Andrew Watkins, Hope Woods, Brahm J Yachnin, Christopher D Bahl, Chris Bailey-Kellogg, Julien S Baker, Rachel J Hagey, Frank DiMaio, Sagar D Khare, Tanja Kortemme, Jason W Labonte, Kresten Lindorff-Larsen, Jens Meiler, William R Schief, Ora Schueler-Furman, Justin B Siegel, Amelie Stein, Vladimir Yarov-Yarovoy, Brian Kuhlman, Andrew Leaver-Fay, Dominik Gront, Jeffrey J Gray, Richard A Bonneau
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks. Nature communications 12 (1) (2021)
Mingji Li, Xiaolu Zheng, Sudhanshu Shanker, Thapakorn Jaroentomeechai, Tyler D Moeller, Sophia W Hulbert, Ilkay Koçer, Josef Byrne, Emily C Cox, Qin Fu, Sheng Zhang, Jason W Labonte, Jeffrey J Gray, Matthew P DeLisa
Shotgun scanning glycomutagenesis: A simple and efficient strategy for constructing and characterizing neoglycoproteins. Proceedings of the National Academy of Sciences of the United States of America 118 (39) (2021)
Morgan L Nance, Jason W Labonte, Jared Adolf-Bryfogle, Jeffrey J Gray
Development and Evaluation of GlycanDock: A Protein-Glycoligand Docking Refinement Algorithm in Rosetta. The journal of physical chemistry. B (2021)
Jeliazko R Jeliazkov, Rahel Frick, Jing Zhou, Jeffrey J Gray
Robustification of RosettaAntibody and Rosetta SnugDock. PloS one 16 (3) (2021)
Daniel R Dempsey, Thibault Viennet, Reina Iwase, Eunyoung Park, Stephanie Henriquez, Zan Chen, Jeliazko R Jeliazkov, Brad A Palanski, Kim L Phan, Paul Coote, Jeffrey J Gray, Michael J Eck, Sandra B Gabelli, Haribabu Arthanari, Philip A Cole
The structural basis of PTEN regulation by multi-site phosphorylation. Nature structural & molecular biology 28 (10) (2021)
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Rebecca F Alford, Melanie Aprahamian, Julien S Baker, Kyle A Barlow, Patrick Barth, Benjamin Basanta, Brian J Bender, Kristin Blacklock, Jaume Bonet, Scott E Boyken, Philip G Bradley, Chris Bystroff, Patrick Conway, Seth Cooper, Bruno E Correia, Brian Coventry, Rachel J Hagey, René M De Jong, Frank DiMaio, Lorna Dsilva, Roland L Dunbrack, Alexander S Ford, Brandon Frenz, Darwin Y Fu, Caleb Geniesse, Lukasz Goldschmidt, Ragul Gowthaman, Jeffrey J Gray, Dominik Gront, Sharon Guffy, Scott Horowitz, Po-Ssu Huang, Thomas Huber, Tim M Jacobs, Jeliazko R Jeliazkov, David K Johnson, Kalli Kappel, John Karanicolas, Hamed Khakzad, Karen R Khar, Sagar D Khare, Firas Khatib, Alisa Khramushin, Indigo C King, Robert Kleffner, Brian Koepnick, Tanja Kortemme, Georg Kuenze, Brian Kuhlman, Daisuke Kuroda, Jason W Labonte, Jason K Lai, Gideon Lapidoth, Andrew Leaver-Fay, Steffen Lindert, Thomas Linsky, Nir London, Joseph H Lubin, Sergey Lyskov, Jack Maguire, Lars Malmström, Enrique Marcos, Orly Marcu, Nicholas A Marze, Jens Meiler, Rocco Moretti, Vikram Khipple Mulligan, Santrupti Nerli, Christoffer Norn, Shane Ó'Conchúir, Noah Ollikainen, Sergey Ovchinnikov, Michael S Pacella, Xingjie Pan, Hahnbeom Park, Ryan E Pavlovicz, Manasi Pethe, Brian G Pierce, Kala Bharath Pilla, Barak Raveh, P Douglas Renfrew, Shourya S Roy Burman, Aliza Rubenstein, Marion F Sauer, Andreas Scheck, William R Schief, Ora Schueler-Furman, Yuval Sedan, Alexander M Sevy, Nikolaos G Sgourakis, Lei Shi, Justin B Siegel, Daniel-Adriano Silva, Shannon Smith, Yifan Song, Amelie Stein, Maria Szegedy, Frank D Teets, Summer B Thyme, Ray Yu-Ruei Wang, Andrew Watkins, Lior Zimmerman, Richard A Bonneau
Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature methods 17 (7) (2020)
Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Andrew M Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W Labonte, Justyna Krys, null null, Christopher Bystroff, William Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland Dunbrack, Tanja Kortemme, Andrew Leaver-Fay, Charlie E M Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J Gray, Richard Bonneau
Better together: Elements of successful scientific software development in a distributed collaborative community. PLoS computational biology 16 (5) (2020)
Shourya S Roy Burman, Morgan L Nance, Jeliazko R Jeliazkov, Jason W Labonte, Joseph H Lubin, Naireeta Biswas, Jeffrey J Gray
Novel sampling strategies and a coarse-grained score function for docking homomers, flexible heteromers, and oligosaccharides using Rosetta in CAPRI rounds 37-45. Proteins 88 (8) (2019)
Andrew Santiago-Frangos, Kathrin S Fröhlich, Jeliazko R Jeliazkov, Ewelina M Małecka, Giada Marino, Jeffrey J Gray, Ben F Luisi, Sarah A Woodson, Steven W Hardwick
Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation. Proceedings of the National Academy of Sciences of the United States of America 116 (22) (2019)
Amy J Fernandez, Earnest James Paul Daniel, Sai Pooja Mahajan, Jeffrey J Gray, Thomas A Gerken, Lawrence A Tabak, Nadine L Samara
The structure of the colorectal cancer-associated enzyme GalNAc-T12 reveals how nonconserved residues dictate its function. Proceedings of the National Academy of Sciences of the United States of America 116 (41) (2019)
Joseph H Lubin, Michael S Pacella, Jeffrey J Gray
A Parametric Rosetta Energy Function Analysis with LK Peptides on SAM Surfaces. Langmuir : the ACS journal of surfaces and colloids 34 (18) (2018)
Jay H Kalin, Muzhou Wu, Andrea V Gomez, Yun Song, Jayanta Das, Dawn Hayward, Nkosi Adejola, Mingxuan Wu, Izabela Panova, Hye Jin Chung, Edward Kim, Holly J Roberts, Justin M Roberts, Polina Prusevich, Jeliazko R Jeliazkov, Shourya S Roy Burman, Louise Fairall, Charles Milano, Abdulkerim Eroglu, Charlotte M Proby, Albena T Dinkova-Kostova, Wayne W Hancock, Jeffrey J Gray, James E Bradner, Sergio Valente, Antonello Mai, Nicole M Anders, Michelle A Rudek, Yong Hu, Byungwoo Ryu, John W R Schwabe, Andrea Mattevi, Rhoda M Alani, Philip A Cole
Targeting the CoREST complex with dual histone deacetylase and demethylase inhibitors. Nature communications 9 (1) (2018)
Wenge Jiang, Michael S Pacella, Hojatollah Vali, Jeffrey J Gray, Marc D McKee
Chiral switching in biomineral suprastructures induced by homochiral l-amino acid. Science advances 4 (8) (2018)
Dimitra Athanasiadou, Wenge Jiang, Dina Goldbaum, Aroba Saleem, Kaustuv Basu, Michael S Pacella, Corinna F Böhm, Richard R Chromik, Maxwell T Hincke, Alejandro B Rodriguez-Navarro, Hojatollah Vali, Stephan E Wolf, Jeffrey J Gray, Khanh Huy Bui, Marc D McKee
Nanostructure, osteopontin, and mechanical properties of calcitic avian eggshell. Science advances 4 (3) (2018)
Julia Koehler Leman, Andrew R D'Avino, Yash Bhatnagar, Jeffrey J Gray
Comparison of NMR and crystal structures of membrane proteins and computational refinement to improve model quality. Proteins 86 (1) (2017)
Heather A Newman, Pamela B Meluh, Jian Lu, Jeremy Vidal, Caryn Carson, Elizabeth Lagesse, Jeffrey J Gray, Jef D Boeke, Michael J Matunis
A high throughput mutagenic analysis of yeast sumo structure and function. PLoS genetics 13 (2) (2017)
Brian D Weitzner, Jeliazko R Jeliazkov, Sergey Lyskov, Nicholas Marze, Daisuke Kuroda, Rahel Frick, Jared Adolf-Bryfogle, Naireeta Biswas, Roland L Dunbrack, Jeffrey J Gray
Modeling and docking of antibody structures with Rosetta. Nature protocols 12 (2) (2017)
Wenge Jiang, Michael S Pacella, Dimitra Athanasiadou, Valentin Nelea, Hojatollah Vali, Robert M Hazen, Jeffrey J Gray, Marc D McKee
Chiral acidic amino acids induce chiral hierarchical structure in calcium carbonate. Nature communications 8 (2017)
Rebecca F Alford, Andrew Leaver-Fay, Lynda Gonzales, Erin L Dolan, Jeffrey J Gray
A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design. PLoS computational biology 13 (12) (2017)
Rebecca F Alford, Andrew Leaver-Fay, Jeliazko R Jeliazkov, Matthew J O'Meara, Frank P DiMaio, Hahnbeom Park, Maxim V Shapovalov, P Douglas Renfrew, Vikram K Mulligan, Kalli Kappel, Jason W Labonte, Michael S Pacella, Richard Bonneau, Philip Bradley, Roland L Dunbrack, Rhiju Das, David Baker, Brian Kuhlman, Tanja Kortemme, Jeffrey J Gray
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design. Journal of chemical theory and computation 13 (6) (2017)
Krishna Praneeth Kilambi, Jeffrey J Gray
Structure-based cross-docking analysis of antibody-antigen interactions. Scientific reports 7 (1) (2017)
Andrew Santiago-Frangos, Jeliazko R Jeliazkov, Jeffrey J Gray, Sarah A Woodson
Acidic C-terminal domains autoregulate the RNA chaperone Hfq. eLife 6 (2017)
Rocco Moretti, Sergey Lyskov, Rhiju Das, Jens Meiler, Jeffrey J Gray
Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE). Protein science : a publication of the Protein Society 27 (1) (2017)
Brian D Weitzner, Jeffrey J Gray
Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint. Journal of immunology (Baltimore, Md. : 1950) 198 (1) (2016)
Nicholas A Marze, Jeliazko R Jeliazkov, Shourya S Roy Burman, Scott E Boyken, Frank DiMaio, Jeffrey J Gray
Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35. Proteins 85 (3) (2016)
Marc F Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovny, Andrej Sali, Joan Segura, Narcis Fernandez-Fuentes, Shruthi Viswanath, Ron Elber, Sergei Grudinin, Petr Popov, Emilie Neveu, Hasup Lee, Minkyung Baek, Sangwoo Park, Lim Heo, Gyu Rie Lee, Chaok Seok, Sanbo Qin, Huan-Xiang Zhou, David W Ritchie, Bernard Maigret, Marie-Dominique Devignes, Anisah Ghoorah, Mieczyslaw Torchala, Raphaël A G Chaleil, Paul A Bates, Efrat Ben-Zeev, Miriam Eisenstein, Surendra S Negi, Zhiping Weng, Thom Vreven, Brian G Pierce, Tyler M Borrman, Jinchao Yu, Françoise Ochsenbein, Raphaël Guerois, Anna Vangone, João P G L M Rodrigues, Gydo van Zundert, Mehdi Nellen, Li Xue, Ezgi Karaca, Adrien S J Melquiond, Koen Visscher, Panagiotis L Kastritis, Alexandre M J J Bonvin, Xianjin Xu, Liming Qiu, Chengfei Yan, Jilong Li, Zhiwei Ma, Jianlin Cheng, Xiaoqin Zou, Yang Shen, Lenna X Peterson, Hyung-Rae Kim, Amit Roy, Xusi Han, Juan Esquivel-Rodriguez, Daisuke Kihara, Xiaofeng Yu, Neil J Bruce, Jonathan C Fuller, Rebecca C Wade, Ivan Anishchenko, Petras J Kundrotas, Ilya A Vakser, Kenichiro Imai, Kazunori Yamada, Toshiyuki Oda, Tsukasa Nakamura, Kentaro Tomii, Chiara Pallara, Miguel Romero-Durana, Brian Jiménez-García, Iain H Moal, Juan Férnandez-Recio, Jong Young Joung, Jong Yun Kim, Keehyoung Joo, Jooyoung Lee, Dima Kozakov, Sandor Vajda, Scott Mottarella, David R Hall, Dmitri Beglov, Artem Mamonov, Bing Xia, Tanggis Bohnuud, Carlos A Del Carpio, Eichiro Ichiishi, Nicholas Marze, Daisuke Kuroda, Shourya S Roy Burman, Jeffrey J Gray, Edrisse Chermak, Luigi Cavallo, Romina Oliva, Andrey Tovchigrechko, Shoshana J Wodak
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment. Proteins (2016)

Jeffrey J Gray.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Jeffrey J Gray