Jim Shaw

Publication Activity (10 Years)

Years Active: 2022-2024
Publications (10 Years): 9

Top Topics

Antibiotic Resistance Genes

Respiratory Syndrome Coronavirus

Electronic Health Record

Top Venues

Bioinformatics (Oxford, England)

Genome research

Journal of computational biology : a journal of computational molecular cell biology

This page only lists publications with an associated author ORCID identifier.

Publications

Jim Shaw, Jean-Sebastien Gounot, Hanrong Chen, Niranjan Nagarajan, Yun William Yu
Floria: fast and accurate strain haplotyping in metagenomes. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Jim Shaw, Jean-Sebastien Gounot, Hanrong Chen, Niranjan Nagarajan, Yun William Yu
Floria: fast and accurate strain haplotyping in metagenomes. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Jim Shaw, Jean-Sebastien Gounot, Hanrong Chen, Niranjan Nagarajan, Yun William Yu
Floria: fast and accurate strain haplotyping in metagenomes. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Martin C Frith, Jim Shaw, John L Spouge
How to optimally sample a sequence for rapid analysis. Bioinformatics (Oxford, England) 39 (2) (2023)
Martin C Frith, Jim Shaw, John L Spouge
How to optimally sample a sequence for rapid analysis. Bioinformatics (Oxford, England) 39 (2) (2023)
Jim Shaw, Yun William Yu
Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic. Genome research (2023)
Jim Shaw, Yun William Yu
Fast and robust metagenomic sequence comparison through sparse chaining with skani. Nature methods (2023)
Jim Shaw, Yun William Yu
flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning. Journal of computational biology : a journal of computational molecular cell biology 29 (2) (2022)
Jim Shaw, Yun William Yu
Theory of local k-mer selection with applications to long-read alignment. Bioinformatics (Oxford, England) 38 (20) (2022)