Floria: fast and accurate strain haplotyping in metagenomes.
Jim ShawJean-Sebastien GounotHanrong ChenNiranjan NagarajanYun William YuPublished in: Bioinformatics (Oxford, England) (2024)
Floria is available at https://github.com/bluenote-1577/floria, and the Floria-PL pipeline is available at https://github.com/jsgounot/Floria_analysis_workflow along with code for reproducing the benchmarks.
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