Jin Yu

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 23

Top Venues

Physical chemistry chemical physics : PCCP

The journal of physical chemistry. B

Proceedings of the National Academy of Sciences of the United States of America

Journal of chemical information and modeling

University of California Irvine

University of Illinois System (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of California Irvine Jul 01 2019

United States

Assistant Professor :: Physics and Astronomy

Beijing Computational Science Research Center

China

Principal Investigator :: Complex System Research

University of California Berkeley Sep 01 2007 - Nov 20 2011

United States

Postdoctoral Fellow :: Physics, Molecular and Cell Biology

Education History

University of Illinois System Sep 01 2001 - Aug 30 2007

United States

PHD :: Physics

Tsinghua University Sep 01 1998 - Feb 01 2001

China

MSC :: Physics

Tsinghua University Sep 01 1994 - Aug 30 1998

China

BSC :: Physics

Publications

Chuanbo Zheng, Hongqiong Liang, Liqiang Dai, Jin Yu, Chunhong Long
Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations. The journal of physical chemistry. B 128 (15) (2024)
Moises E Romero, Shannon J McElhenney, Jin Yu
Trapping a non-cognate nucleotide upon initial binding for replication fidelity control in SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP 26 (3) (2024)
Moises E Romero, Shannon J McElhenney, Jin Yu
Trapping a non-cognate nucleotide upon initial binding for replication fidelity control in SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP 26 (3) (2024)
Moises E Romero, Shannon J McElhenney, Jin Yu
Trapping a non-cognate nucleotide upon initial binding for replication fidelity control in SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP 26 (3) (2024)
Chuanbo Zheng, Hongqiong Liang, Liqiang Dai, Jin Yu, Chunhong Long
Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations. The journal of physical chemistry. B (2024)
Chunhong Long, Chuanbo Zheng, Hongqiong Liang, Liqiang Dai, Jin Yu
Correction to "Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations". The journal of physical chemistry. B 128 (24) (2024)
Chunhong Long, Chuanbo Zheng, Hongqiong Liang, Liqiang Dai, Jin Yu
Correction to "Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations". The journal of physical chemistry. B (2024)
Chuanbo Zheng, Hongqiong Liang, Liqiang Dai, Jin Yu, Chunhong Long
Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations. The journal of physical chemistry. B 128 (15) (2024)
Moises E Romero, Shannon J McElhenney, Jin Yu
Trapping a non-cognate nucleotide upon initial binding for replication fidelity control in SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP (2024)
Chuanbo Zheng, Hongqiong Liang, Liqiang Dai, Jin Yu, Chunhong Long
Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations. The journal of physical chemistry. B 128 (15) (2024)
Jin Yu
On the common pathways of deformation: RNA vs DNA under interrogation. Proceedings of the National Academy of Sciences of the United States of America 120 (23) (2023)
Chunhong Long, Moises Ernesto Romero, Liqiang Dai, Jin Yu
Energetic vs. entropic stabilization between a Remdesivir analogue and cognate ATP upon binding and insertion into the active site of SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP 25 (19) (2023)
Chunhong Long, Moises Ernesto Romero, Liqiang Dai, Jin Yu
Energetic vs. entropic stabilization between a Remdesivir analogue and cognate ATP upon binding and insertion into the active site of SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP 25 (19) (2023)
Chunhong Long, Moises Ernesto Romero, Liqiang Dai, Jin Yu
Energetic vs. entropic stabilization between a Remdesivir analogue and cognate ATP upon binding and insertion into the active site of SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP 25 (19) (2023)
Chunhong Long, Moises Ernesto Romero, Liqiang Dai, Jin Yu
Energetic vs. entropic stabilization between a Remdesivir analogue and cognate ATP upon binding and insertion into the active site of SARS-CoV-2 RNA dependent RNA polymerase. Physical chemistry chemical physics : PCCP (2023)
Chuan Li, Jiangting Liu, Jianfang Chen, Yuan Yuan, Jin Yu, Qiaolin Gou, Yanzhi Guo, Xuemei Pu
An Interpretable Convolutional Neural Network Framework for Analyzing Molecular Dynamics Trajectories: a Case Study on Functional States for G-Protein-Coupled Receptors. Journal of chemical information and modeling 62 (6) (2022)
Xin Chen, Yuan Yuan, Yichi Chen, Jin Yu, Jingzhou Wang, Jianfang Chen, Yanzhi Guo, Xuemei Pu
Biased Activation Mechanism Induced by GPCR Heterodimerization: Observations from μOR/δOR Dimers. Journal of chemical information and modeling 62 (22) (2022)
Liqiang Dai, Yongping Xu, Zhenwei Du, Xiao-Dong Su, Jin Yu
Revealing atomic-scale molecular diffusion of a plant-transcription factor WRKY domain protein along DNA. Proceedings of the National Academy of Sciences of the United States of America 118 (23) (2021)
Liqiang Dai, Bo Zhang, Shuxun Cui, Jin Yu
Inspecting fluctuation and coordination around chromophore inside green fluorescent protein from water to nonpolar solvent. Proteins 87 (7) (2019)
Chenggong Ji, Shuo Du, Peng Li, Qinyu Zhu, Xiaoke Yang, Chunhong Long, Jin Yu, Feng Shao, Junyu Xiao
Structural mechanism for guanylate-binding proteins (GBPs) targeting by the Shigella E3 ligase IpaH9.8. PLoS pathogens 15 (6) (2019)
Chunhong Long, Jin Yu
Balancing Non-Equilibrium Driving with Nucleotide Selectivity at Kinetic Checkpoints in Polymerase Fidelity Control. Entropy (Basel, Switzerland) 20 (4) (2018)
Chuanbiao Zhang, Jin Yu, Xin Zhou
Imaging Metastable States and Transitions in Proteins by Trajectory Map. The journal of physical chemistry. B 121 (18) (2017)
Chao E, Baogen Duan, Jin Yu
Nucleotide Selectivity at a Preinsertion Checkpoint of T7 RNA Polymerase Transcription Elongation. The journal of physical chemistry. B 121 (15) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jin Yu