Jonathan Paul Lynch (Jonathan Lynch, Jonathan P Lynch)

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 44

Top Topics

Wastewater Treatment

Arabidopsis Thaliana

Top Venues

Plant physiology

Plant, cell & environment

Journal of experimental botany

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Stephanie P Klein, Shawn M Kaeppler, Kathleen M Brown, Jonathan Paul Lynch
Integrating GWAS with a gene co-expression network better prioritizes candidate genes associated with root metaxylem phenes in maize. The plant genome (2024)
Jagdeep Singh Sidhu, Jonathan Paul Lynch
Cortical cell size regulates root metabolic cost. The Plant journal : for cell and molecular biology (2024)
Jagdeep Singh Sidhu, Ivan Lopez-Valdivia, Christopher F Strock, Hannah M Schneider, Jonathan Paul Lynch
Cortical parenchyma wall width regulates root metabolic cost and maize performance under suboptimal water availability. Journal of experimental botany (2024)
Jagdeep Singh Sidhu, Jonathan Paul Lynch
Cortical cell size regulates root metabolic cost. The Plant journal : for cell and molecular biology 118 (5) (2024)
Tania Galindo-Castañeda, Martin Hartmann, Jonathan Paul Lynch
Location: root architecture structures rhizosphere microbial associations. Journal of experimental botany (2023)
Hilary Hunt, Stefan Leape, Jagdeep Singh Sidhu, Ishan Ajmera, Jonathan Paul Lynch, R George Ratcliffe, Alisdair R Fernie
A role for fermentation in aerobic conditions as revealed by computational analysis of maize root metabolism during growth by cell elongation. The Plant journal : for cell and molecular biology (2023)
Hannah M Schneider, Vai S Lor, Xia Zhang, Patompong Saengwilai, Meredith T Hanlon, Stephanie P Klein, Jayne L Davis, Aditi N Borkar, Cody L Depew, Malcolm J Bennett, Shawn M Kaeppler, Kathleen M Brown, Rahul Arvind Bhosale, Jonathan Paul Lynch
Transcription factor bHLH121 regulates root cortical aerenchyma formation in maize. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Hannah M Schneider, Vai S Lor, Xia Zhang, Patompong Saengwilai, Meredith T Hanlon, Stephanie P Klein, Jayne L Davis, Aditi N Borkar, Cody L Depew, Malcolm J Bennett, Shawn M Kaeppler, Kathleen M Brown, Rahul Arvind Bhosale, Jonathan Paul Lynch
Transcription factor bHLH121 regulates root cortical aerenchyma formation in maize. Proceedings of the National Academy of Sciences of the United States of America 120 (12) (2023)
Ivan Lopez-Valdivia, Xiyu Yang, Jonathan Paul Lynch
Large root cortical cells and reduced cortical cell files improve growth under suboptimal nitrogen in silico. Plant physiology (2023)
Ishan B Ajmera, Amelia Henry, Ando M Radanielson, Stephanie P Klein, Aleksandr Ianevski, Malcolm J Bennett, Leah R Band, Jonathan Paul Lynch
Integrated root phenotypes for improved rice performance under low nitrogen availability. Plant, cell & environment 45 (3) (2022)
Riccardo Fusi, Serena Rosignoli, Haoyu Lou, Giuseppe Sangiorgi, Riccardo Bovina, Jacob K Pattem, Aditi N Borkar, Marco Lombardi, Cristian Forestan, Sara G Milner, Jayne L Davis, Aneesh Lale, Gwendolyn K Kirschner, Ranjan Swarup, Alberto Tassinari, Bipin K Pandey, Larry M York, Brian S Atkinson, Craig J Sturrock, Sacha J Mooney, Frank Hochholdinger, Matthew R Tucker, Axel Himmelbach, Nils Stein, Martin Mascher, Kerstin A Nagel, Laura De Gara, James Simmonds, Cristobal Uauy, Roberto Tuberosa, Jonathan Paul Lynch, Gleb E Yakubov, Malcolm J Bennett, Rahul Arvind Bhosale, Silvio Salvi
Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism. Proceedings of the National Academy of Sciences of the United States of America 119 (31) (2022)
Ernst D Schäfer, Markus R Owen, Leah R Band, Etienne Farcot, Malcolm J Bennett, Jonathan Paul Lynch
Modeling root loss reveals impacts on nutrient uptake and crop development. Plant physiology 190 (4) (2022)
Suxing Liu, Carlos Sherard Barrow, Meredith T Hanlon, Jonathan Paul Lynch, Alexander K Bucksch
DIRT/3D: 3D root phenotyping for field-grown maize (Zea mays). Plant physiology 187 (2) (2022)
Harini Rangarajan, David Hadka, Patrick Reed, Jonathan Paul Lynch
Multi-objective optimization of root phenotypes for nutrient capture using evolutionary algorithms. The Plant journal : for cell and molecular biology 111 (1) (2022)
Ivan Lopez-Valdivia, Alden C Perkins, Hannah M Schneider, Miguel Vallebueno-Estrada, James D Burridge, Eduardo González-Orozco, Aurora Montufar, Rafael Montiel, Jonathan Paul Lynch, Jean-Philippe Vielle-Calzada
Gradual domestication of root traits in the earliest maize from Tehuacán. Proceedings of the National Academy of Sciences of the United States of America 119 (17) (2022)
Hannah M Schneider, Jennifer T Yang, Kathleen M Brown, Jonathan Paul Lynch
Nodal root diameter and node number in maize (Zea mays L.) interact to influence plant growth under nitrogen stress. Plant direct 5 (3) (2021)
Hannah M Schneider, Christopher F Strock, Meredith T Hanlon, Dorien J Vanhees, Alden C Perkins, Ishan B Ajmera, Jagdeep Singh Sidhu, Sacha J Mooney, Kathleen M Brown, Jonathan Paul Lynch
Multiseriate cortical sclerenchyma enhance root penetration in compacted soils. Proceedings of the National Academy of Sciences of the United States of America 118 (6) (2021)
Hannah M Schneider, Vai Sa Nee Lor, Meredith T Hanlon, Alden Perkins, Shawn M Kaeppler, Aditi N Borkar, Rahul Bhosale, Xia Zhang, Jonas Rodriguez, Alexander Bucksch, Malcolm J Bennett, Kathleen M Brown, Jonathan Paul Lynch
Root angle in maize influences nitrogen capture and is regulated by calcineurin B-like protein (CBL)-interacting serine/threonine-protein kinase 15 (ZmCIPK15). Plant, cell & environment (2021)
Jonathan Paul Lynch, Sacha J Mooney, Christopher F Strock, Hannah M Schneider
Future roots for future soils. Plant, cell & environment (2021)
Po-An Lin, Yintong Chen, Duverney Chaverra-Rodriguez, Chan Chin Heu, Nursyafiqi Bin Zainuddin, Jagdeep Singh Sidhu, Michelle Peiffer, Ching-Wen Tan, Anjel M Helms, Donghun Kim, Jared G Ali, Jason L Rasgon, Jonathan Paul Lynch, Charles T Anderson, Gary W Felton
Silencing the alarm: an insect salivary enzyme closes plant stomata and inhibits volatile release. The New phytologist 230 (2) (2021)
Harini Rangarajan, Jonathan Paul Lynch
A Comparative Analysis of Quantitative Metrics of Root Architecture. Plant phenomics (Washington, D.C.) 2021 (2021)
Bipin Kumar Pandey, Guoqiang Huang, Rahul Arvind Bhosale, Sjon Hartman, Craig J Sturrock, Lottie Jose, Olivier C Martin, Michal Karady, Laurentius A C J Voesenek, Karen Ljung, Jonathan Paul Lynch, Kathleen M Brown, William R Whalley, Sacha J Mooney, Dabing Zhang, Malcolm J Bennett
Plant roots sense soil compaction through restricted ethylene diffusion. Science (New York, N.Y.) 371 (6526) (2021)
Jonathan Paul Lynch
Harnessing root architecture to address global challenges. The Plant journal : for cell and molecular biology (2021)
Kara A Levin, Matthew R Tucker, Christopher F Strock, Jonathan Paul Lynch, Diane E Mather
Three-dimensional imaging reveals that positions of cyst nematode feeding sites relative to xylem vessels differ between susceptible and resistant wheat. Plant cell reports 40 (2) (2021)
Dorien J Vanhees, Hannah M Schneider, Jagdeep Singh Sidhu, Kenneth W Loades, A Glyn Bengough, Malcolm J Bennett, Bipin K Pandey, Kathleen M Brown, Sacha J Mooney, Jonathan Paul Lynch
Soil penetration by maize roots is negatively related to ethylene-induced thickening. Plant, cell & environment (2021)
Stephanie P Klein, Hannah M Schneider, Alden C Perkins, Kathleen M Brown, Jonathan Paul Lynch
Multiple Integrated Root Phenotypes Are Associated with Improved Drought Tolerance. Plant physiology 183 (3) (2020)
James D Burridge, Christopher K Black, Eric A Nord, Johannes Auke Postma, Jagdeep Singh Sidhu, Larry M York, Jonathan Paul Lynch
An Analysis of Soil Coring Strategies to Estimate Root Depth in Maize (Zea mays) and Common Bean (Phaseolus vulgaris). Plant phenomics (Washington, D.C.) 2020 (2020)
Christopher F Strock, James D Burridge, Miranda D Niemiec, Kathleen M Brown, Jonathan Paul Lynch
Root metaxylem and architecture phenotypes integrate to regulate water use under drought stress. Plant, cell & environment 44 (1) (2020)
Hannah M Schneider, Stephanie P Klein, Meredith T Hanlon, Shawn Kaeppler, Kathleen M Brown, Jonathan Paul Lynch
Genetic control of root anatomical plasticity in maize. The plant genome 13 (1) (2020)
Benedict C Oyiga, Janina Palczak, Tobias Wojciechowski, Jonathan Paul Lynch, Ali A Naz, Jens Léon, Agim Ballvora
Genetic components of root architecture and anatomy adjustments to water-deficit stress in spring barley. Plant, cell & environment 43 (3) (2019)
Tania Galindo-Castañeda, Kathleen M Brown, Gretchen A Kuldau, Gregory W Roth, Nancy G Wenner, Swayamjit Ray, Hannah Schneider, Jonathan Paul Lynch
Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize. Plant, cell & environment 42 (11) (2019)
Jonathan Paul Lynch
Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture. The New phytologist 223 (2) (2019)
Jitender Giri, Rahul Arvind Bhosale, Guoqiang Huang, Bipin Kumar Pandey, Helen Parker, Susan Zappala, Jing Yang, Anne Dievart, Charlotte Bureau, Karen Ljung, Adam Price, Terry Rose, Antoine Larrieu, Stefan Mairhofer, Craig J Sturrock, Philip White, Lionel Dupuy, Malcolm John Hawkesford, Christophe Perin, Wanqi Liang, Benjamin Peret, Charlie T Hodgman, Jonathan Paul Lynch, Matthias Wissuwa, Dabing Zhang, Tony Pridmore, Sacha J Mooney, Emmanuel Guiderdoni, Ranjan Swarup, Malcolm J Bennett
Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature communications 9 (1) (2018)
Tania Galindo-Castañeda, Kathleen M Brown, Jonathan Paul Lynch
Reduced root cortical burden improves growth and grain yield under low phosphorus availability in maize. Plant, cell & environment 41 (7) (2018)
Jitender Giri, Rahul Arvind Bhosale, Guoqiang Huang, Bipin Kumar Pandey, Helen Parker, Susan Zappala, Jing Yang, Anne Dievart, Charlotte Bureau, Karen Ljung, Adam Price, Terry Rose, Antoine Larrieu, Stefan Mairhofer, Craig J Sturrock, Philip White, Lionel Dupuy, Malcolm John Hawkesford, Christophe Perin, Wanqi Liang, Benjamin Peret, Charlie T Hodgman, Jonathan Paul Lynch, Matthias Wissuwa, Dabing Zhang, Tony Pridmore, Sacha J Mooney, Emmanuel Guiderdoni, Ranjan Swarup, Malcolm J Bennett
Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature communications 9 (1) (2018)
Rahul Arvind Bhosale, Jitender Giri, Bipin Kumar Pandey, Ricardo F H Giehl, Anja Hartmann, Richard Traini, Jekaterina Truskina, Nicola Leftley, Meredith Hanlon, Kamal Swarup, Afaf Rashed, Ute Voß, Jose Alonso, Anna Stepanova, Jeonga Yun, Karen Ljung, Kathleen M Brown, Jonathan Paul Lynch, Liam Dolan, Teva Vernoux, Anthony Bishopp, Darren M Wells, Nicolaus von Wirén, Malcolm J Bennett, Ranjan Swarup
A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature communications 9 (1) (2018)
Rahul Arvind Bhosale, Jitender Giri, Bipin Kumar Pandey, Ricardo F H Giehl, Anja Hartmann, Richard Traini, Jekaterina Truskina, Nicola Leftley, Meredith Hanlon, Kamal Swarup, Afaf Rashed, Ute Voß, Jose Alonso, Anna Stepanova, Jeonga Yun, Karen Ljung, Kathleen M Brown, Jonathan Paul Lynch, Liam Dolan, Teva Vernoux, Anthony Bishopp, Darren M Wells, Nicolaus von Wirén, Malcolm J Bennett, Ranjan Swarup
Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature communications 9 (1) (2018)
Baoru Sun, Yingzhi Gao, Jonathan Paul Lynch
Large Crown Root Number Improves Topsoil Foraging and Phosphorus Acquisition. Plant physiology 177 (1) (2018)
Christopher F Strock, Laurie Morrow de la Riva, Jonathan Paul Lynch
Reduction in Root Secondary Growth as a Strategy for Phosphorus Acquisition. Plant physiology 176 (1) (2017)
Hannah M Schneider, Johannes Auke Postma, Tobias Wojciechowski, Christian W Kuppe, Jonathan Paul Lynch
Root Cortical Senescence Improves Growth under Suboptimal Availability of N, P, and K. Plant physiology 174 (4) (2017)
Joseph L Gage, Diego Jarquin, Maria Cinta Romay, Aaron Lorenz, Edward S Buckler, Shawn Kaeppler, Naser Alkhalifah, Martin O Bohn, Darwin A Campbell, Jode Edwards, David Ertl, Sherry Flint-Garcia, Jack Gardiner, Byron Good, Candice N Hirsch, James B Holland, David C Hooker, Joseph Knoll, Judith Kolkman, Greg Kruger, Nick Lauter, Carolyn J Lawrence-Dill, Elizabeth Lee, Jonathan Paul Lynch, Seth C Murray, Rebecca Nelson, Jane Petzoldt, Torbert Rocheford, James Schnable, Patrick S Schnable, Brian Scully, Margaret Smith, Nathan M Springer, Srikant Srinivasan, Renee Walton, Teclemariam Weldekidan, Randall J Wisser, Wenwei Xu, Jianming Yu, Natalia de Leon
The effect of artificial selection on phenotypic plasticity in maize. Nature communications 8 (1) (2017)
Hannah M Schneider, Tobias Wojciechowski, Johannes A Postma, Kathleen M Brown, Andreas Lücke, Viktoria Zeisler, Lukas Schreiber, Jonathan Paul Lynch
Root cortical senescence decreases root respiration, nutrient content and radial water and nutrient transport in barley. Plant, cell & environment 40 (8) (2017)
Yingzhi Gao, Jonathan Paul Lynch
Reduced crown root number improves water acquisition under water deficit stress in maize (Zea mays L.). Journal of experimental botany 67 (15) (2016)
Larry M York, Moshe Silberbush, Jonathan Paul Lynch
Spatiotemporal variation of nitrate uptake kinetics within the maize (Zea mays L.) root system is associated with greater nitrate uptake and interactions with architectural phenes. Journal of experimental botany 67 (12) (2016)
Joseph G Chimungu, Kenneth W Loades, Jonathan Paul Lynch
Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays). Journal of experimental botany 66 (11) (2015)
Jonathan Paul Lynch, Tobias Wojciechowski
Opportunities and challenges in the subsoil: pathways to deeper rooted crops. Journal of experimental botany 66 (8) (2015)
Larry M York, Tania Galindo-Castañeda, Jeffrey R Schussler, Jonathan Paul Lynch
Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress. Journal of experimental botany 66 (8) (2015)
Magalhaes Amade Miguel, Johannes Auke Postma, Jonathan Paul Lynch
Phene synergism between root hair length and basal root growth angle for phosphorus acquisition. Plant physiology 167 (4) (2015)
Larry M York, Jonathan Paul Lynch
Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition. Journal of experimental botany 66 (18) (2015)
Ai Zhan, Jonathan Paul Lynch
Reduced frequency of lateral root branching improves N capture from low-N soils in maize. Journal of experimental botany 66 (7) (2015)
Ai Zhan, Hannah Schneider, Jonathan Paul Lynch
Reduced Lateral Root Branching Density Improves Drought Tolerance in Maize. Plant physiology 168 (4) (2015)
Patompong Saengwilai, Eric A Nord, Joseph G Chimungu, Kathleen M Brown, Jonathan Paul Lynch
Root cortical aerenchyma enhances nitrogen acquisition from low-nitrogen soils in maize. Plant physiology 166 (2) (2014)
Joseph G Chimungu, Kathleen M Brown, Jonathan Paul Lynch
Reduced root cortical cell file number improves drought tolerance in maize. Plant physiology 166 (4) (2014)
Joseph G Chimungu, Kathleen M Brown, Jonathan Paul Lynch
Large root cortical cell size improves drought tolerance in maize. Plant physiology 166 (4) (2014)
Patompong Saengwilai, Xiaoli Tian, Jonathan Paul Lynch
Low crown root number enhances nitrogen acquisition from low-nitrogen soils in maize. Plant physiology 166 (2) (2014)