The plant genome

Keyphrases

Publications

volume 17, number 1, 2024

Isabella Chiaravallotti, Jennifer Lin, Vivi Arief, Zulfi Jahufer, Juan M Osorno, Phil McClean, Diego Hernandez Jarquin, Valerio Hoyos-Villegas
Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating. The plant genome 17 (1) (2024)
Karam Mostafa, Bayram Ali Yerlikaya, Mohamed Farah Abdulla, Abdullah Aydin, Seher Yerlikaya, Musa Kavas
Genome-wide analysis of PvMADS in common bean and functional characterization of PvMADS31 in Arabidopsis thaliana as a player in abiotic stress responses. The plant genome 17 (1) (2024)
João Paulo Gomes Viana, Arián Avalos, Zhihai Zhang, Randall L Nelson, Matthew E Hudson
Common signatures of selection reveal target loci for breeding across soybean populations. The plant genome 17 (1) (2024)
Asa Budnick, Megan J Franklin, Delecia Utley, Brianne Edwards, Melodi Charles, Eli D Hornstein, Heike W Sederoff
Long- and short-read sequencing methods discover distinct circular RNA pools in Lotus japonicus. The plant genome 17 (1) (2024)
Tannaz Zare, Jeff F Paril, Emma M Barnett, Parwinder Kaur, Rudi Appels, Berit Ebert, Ute Roessner, Alexandre J Fournier-Level
Comparative genomics points to tandem duplications of SAD gene clusters as drivers of increased α-linolenic (ω-3) content in S. hispanica seeds. The plant genome 17 (1) (2024)
Hu Wang, Yuguang Bai, Bill Biligetu
Effects of SNP marker density and training population size on prediction accuracy in alfalfa (Medicago sativa L.) genomic selection. The plant genome 17 (1) (2024)
Umesh Kamble, Xinyao He, Sudhir Navathe, Manjeet Kumar, Madhu Patial, Muhammad Rezaul Kabir, Gyanendra Singh, Gyanendra Pratap Singh, Arun Kumar Joshi, Pawan Kumar Singh
Genome-wide association mapping for field spot blotch resistance in South Asian spring wheat genotypes. The plant genome 17 (1) (2024)
Umesh Kamble, Xinyao He, Sudhir Navathe, Manjeet Kumar, Madhu Patial, Muhammad Rezaul Kabir, Gyanendra Singh, Gyanendra Pratap Singh, Arun Kumar Joshi, Pawan Kumar Singh
Genome-wide association mapping for field spot blotch resistance in South Asian spring wheat genotypes. The plant genome 17 (1) (2024)
Samiullah Naik, Jebi Sudan, Uneeb Urwat, Mohammad Maqbool Pakhtoon, Basharat Bhat, Varun Sharma, Parvaze A Sofi, Asif Bashir Shikari, Bilal A Bhat, Najeebul Rehman Sofi, P V Vara Prasad, Sajad Majeed Zargar
Genome-wide SNP discovery and genotyping delineates potential QTLs underlying major yield-attributing traits in buckwheat. The plant genome 17 (1) (2024)

volume 17, number 2, 2024

C Laxuman, Yogesh Dashrath Naik, B K Desai, Mallikarjun Kenganal, Bharat Patil, B S Reddy, D H Patil, Sidramappa Chakurte, P H Kuchanur, Shiva Kumar K, Ashok Kumar Gaddi, L N Yogesh, Jayaprakash Nidagundi, B M Dodamani, Gururaj Sunkad, Mahendar Thudi, Rajeev Kumar Varshney
Development and evaluation of Fusarium wilt-resistant and high-yielding chickpea advanced breeding line, KCD 11. The plant genome 17 (2) (2024)
Lingling Wang, Zixin Yuan, Jingyi Wang, Yali Guan
Genome-wide identification and functional profile analysis of long non-coding RNAs in Avicennia marina. The plant genome 17 (2) (2024)
Anup Dhakal, Jesse A Poland, Laxman Adhikari, Ethan Faryna, Jason D Fiedler, Jessica E Rutkoski, Juan David Arbelaez
Implementing multi-trait genomic selection to improve grain milling quality in oats (Avena sativa L.). The plant genome 17 (2) (2024)
Jiaxing Song, Haiming Kong, Jing Yang, Jiaxian Jing, Siyu Li, Nan Ma, Rongchen Yang, Yuman Cao, Yafang Wang, Tianming Hu, Peizhi Yang
Genome assembly and multi-omic analyses reveal the mechanisms underlying flower color formation in Torenia fournieri. The plant genome 17 (2) (2024)
Abebe Menkir, Ibnou Dieng, Melaku Gedil, Wende Mengesha, Muhyideen Oyekunle, Priscillia F Riberio, Gloria Boakyewaa Adu, Abdoul-Madjidou Yacoubou, Mmadou Coulibaly, Folusho A Bankole, John Derera, Bunmi Bossey, Nnanna Unachukwu, Yinka Ilesanmi, Silvestro Meseka
Approaches and progress in breeding drought-tolerant maize hybrids for tropical lowlands in west and central Africa. The plant genome 17 (2) (2024)
Kashif Akhtar, Noor Ul Ain, P V Vara Prasad, Misbah Naz, Mehtab Muhammad Aslam, Ivica Djalovic, Muhammad Riaz, Shakeel Ahmad, Rajeev Kumar Varshney, Bing He, Ronghui Wen
Physiological, molecular, and environmental insights into plant nitrogen uptake, and metabolism under abiotic stresses. The plant genome 17 (2) (2024)
Aaron J DeSalvio, Alper Adak, Richard Minyo, Diego Hernandez Jarquin, Noah D Winans, Daniel Crozier, William L Rooney
Near-infrared reflectance spectroscopy phenomic prediction can perform similarly to genomic prediction of maize agronomic traits across environments. The plant genome 17 (2) (2024)
Xu Tang, Ayman Eid, Rui Zhang, Yanhao Cheng, Annan Liu, Yurong Chen, Pengxu Chen, Yong Zhang, Yiping Qi
Genome editing in rice and tomato with a small Un1Cas12f1 nuclease. The plant genome 17 (2) (2024)
Dennis N Katuuramu, Amnon Levi, William P Wechter
Mapping the genetic architecture of low-temperature stress tolerance in citron watermelon. The plant genome 17 (2) (2024)
Davis M Gimode, Grace Ochieng, Santosh Deshpande, Eric O Manyasa, Clarisse P Kondombo, Erick O Mikwa, Millicent O Avosa, Josephine Sarah Kunguni, Kahiu Ngugi, Patrick Sheunda, McDonald Bright Jumbo, Damaris Achieng Odeny
Validation of sorghum quality control (QC) markers across African breeding lines. The plant genome 17 (2) (2024)
Xian Zhou, Jie Cao, Xiao-Meng Liu, Li-Na Wang, Wei-Wei Zhang, Jia-Bao Ye, Feng Xu, Shuiyuan Cheng
Cloning and functional analysis of Gb4CL1 and Gb4CL2 from Ginkgo biloba. The plant genome 17 (2) (2024)
Yanyan Zhang, Xiaoya Huang, Long Zhang, Weidong Gao, Jingfu Ma, Delong Yang, Peipei Zhang
Genome-wide identification, gene expression and haplotype analysis of the rhomboid-like gene family in wheat (Triticum aestivum L.). The plant genome 17 (2) (2024)
Ahmed Sallam, Mona F A Dawood, Diego Jarquín, Elsayed A Mohamed, Mohamed Y Hussein, Andreas Börner, Asmaa A M Ahmed
Genome-wide scanning to identify and validate single nucleotide polymorphism markers associated with drought tolerance in spring wheat seedlings. The plant genome 17 (2) (2024)
Patrick Obia Ongom, Christian Fatokun, Abou Togola, Ibnou Dieng, Stella Salvo, Brian Gardunia, Saba Baba Mohammed, Ousmane Boukar
Genetic progress in cowpea [Vigna unguiculata (L.) Walp.] stemming from breeding modernization efforts at the International Institute of Tropical Agriculture. The plant genome 17 (2) (2024)
Ahmed Sallam, Mona F A Dawood, Diego Jarquín, Elsayed A Mohamed, Mohamed Y Hussein, Andreas Börner, Asmaa A M Ahmed
Genome-wide scanning to identify and validate single nucleotide polymorphism markers associated with drought tolerance in spring wheat seedlings. The plant genome 17 (2) (2024)
Zhe Cao, Didier Socquet-Juglard, Ketema Daba, Albert Vandenberg, Kirstin E Bett
Understanding genome structure facilitates the use of wild lentil germplasm for breeding: A case study with shattering loci. The plant genome 17 (2) (2024)
Susanne Dreisigacker, Johannes W R Martini, Jaime Cuevas, Paulino Pérez-Rodríguez, Nerida Lozano-Ramírez, Julio Huerta, Pawan Kumar Singh, Leonardo Crespo-Herrera, Alison R Bentley, José Crosa
Genomic prediction of synthetic hexaploid wheat upon tetraploid durum and diploid Aegilops parental pools. The plant genome 17 (2) (2024)
Zhenbin Hu, Junhao Chen, Marcus O Olatoye, Hengyou Zhang, Zhenguo Lin
Transcriptome-wide expression landscape and starch synthesis pathway co-expression network in sorghum. The plant genome 17 (2) (2024)
Stella Salvo, John Derera
The Plant Genome special section: Modern improvement of tropical crops. The plant genome 17 (2) (2024)
Upendra Kumari Wijesundara, Ardashir Kharabian Masouleh, Agnelo Furtado, Natalie L Dillon, Robert James Henry
A chromosome-level genome of mango exclusively from long-read sequence data. The plant genome 17 (2) (2024)
Martin Laforest, Sara L Martin, Katherine Bisaillon, Brahim Soufiane, Sydney Meloche, François J Tardif, Eric R Page
The ancestral karyotype of the Heliantheae Alliance, herbicide resistance, and human allergens: Insights from the genomes of common and giant ragweed. The plant genome 17 (2) (2024)
Bartolo de Jesús Villar-Hernández, Susanne Dreisigacker, Leo Crespo, Paulino Pérez-Rodríguez, Sergio Pérez-Elizalde, Fernando H Toledo, José Crosa
A Bayesian optimization R package for multitrait parental selection. The plant genome 17 (2) (2024)
Jiaxing Song, Haiming Kong, Jing Yang, Jiaxian Jing, Siyu Li, Nan Ma, Rongchen Yang, Yuman Cao, Yafang Wang, Tianming Hu, Peizhi Yang
Genome assembly and multi-omic analyses reveal the mechanisms underlying flower color formation in Torenia fournieri. The plant genome 17 (2) (2024)
Kira Villiers, Kai Peter Voss-Fels, Eric Dinglasan, Bertus Jacobs, Lee Hickey, Ben J Hayes
Evolutionary computing to assemble standing genetic diversity and achieve long-term genetic gain. The plant genome 17 (2) (2024)
Elissar Alam, Catalina Moyer, Sujeet Verma, Natalia A Peres, Vance M Whitaker
Exploring the genetic basis of resistance to Neopestalotiopsis species in strawberry. The plant genome 17 (2) (2024)
Xian Zhou, Jie Cao, Xiao-Meng Liu, Li-Na Wang, Wei-Wei Zhang, Jia-Bao Ye, Feng Xu, Shuiyuan Cheng
Cloning and functional analysis of Gb4CL1 and Gb4CL2 from Ginkgo biloba. The plant genome 17 (2) (2024)
Masarat Elias, Diriba Chere, Dagnachew Lule, Desalegn Serba, Alemu Tirfessa, Dandena Gelmesa, Tesfaye Tesso, Kassahun Bantte, Temesgen M Menamo
Multi-locus genome-wide association study reveal genomic regions underlying root system architecture traits in Ethiopian sorghum germplasm. The plant genome 17 (2) (2024)
Carl VanGessel, Brian Rice, Terry J Felderhoff, Jean Rigaud Charles, Gael Pressoir, Vamsi Nalam, Geoffrey P Morris
Globally deployed sorghum aphid resistance gene RMES1 is vulnerable to biotype shifts but is bolstered by RMES2. The plant genome 17 (2) (2024)
Carl VanGessel, Brian Rice, Terry J Felderhoff, Jean Rigaud Charles, Gael Pressoir, Vamsi Nalam, Geoffrey P Morris
Globally deployed sorghum aphid resistance gene RMES1 is vulnerable to biotype shifts but is bolstered by RMES2. The plant genome 17 (2) (2024)
Pradeep Ruperao, Prasad Bajaj, Rashmi Yadav, Mahalingam Angamuthu, Rajkumar Subramani, Vandana Rai, Kapil Tiwari, Abhishek Rathore, Kuldeep Singh, Gyanendra Pratap Singh, Ulavappa B Angadi, Sean Mayes, Parimalan Rangan
Double-digest restriction-associated DNA sequencing-based genotyping and its applications in sesame germplasm management. The plant genome 17 (2) (2024)
Elisabeth Diatta-Holgate, Ben Bergsma, Mitchell R Tuinstra
Mutations in the dwarf3 gene confer height stability in sorghum. The plant genome 17 (2) (2024)
Xu Tang, Ayman Eid, Rui Zhang, Yanhao Cheng, Annan Liu, Yurong Chen, Pengxu Chen, Yong Zhang, Yiping Qi
Genome editing in rice and tomato with a small Un1Cas12f1 nuclease. The plant genome 17 (2) (2024)
Abdulqader Jighly
Pitfalls of multi-species SNP arrays introducing new forms of ascertainment bias. The plant genome 17 (2) (2024)
Ruifeng Yang, Hongyi Chen, Da Zhang, Qixiang Zhang, Youjun Huang
Integrated transcriptomic and lipidomic analysis provides key insights into lipid content changes during pecan (Carya illinoensis) fruit development. The plant genome 17 (2) (2024)
Md Nurealam Siddiqui, Melisa Jahiu, Mohammad Kamruzzaman, Miguel Sanchez-Garcia, Annaliese S Mason, Jens Léon, Agim Ballvora
Genetic control of root architectural traits under drought stress in spring barley (Hordeum vulgare L.). The plant genome 17 (2) (2024)
Elisabeth Diatta-Holgate, Ben Bergsma, Mitchell R Tuinstra
Mutations in the dwarf3 gene confer height stability in sorghum. The plant genome 17 (2) (2024)
Xiangjian Gou, Yang Shao, Xiao Wang, Haoran Shi, Jianming Yu, Xianran Li, Tingting Guo
Evolutionary patterns of DNA base composition at polymorphic sites highlight the role of the environment in shaping barley and rice genomes. The plant genome 17 (2) (2024)
Ibnou Dieng, Brian Gardunia, Giovanny E Covarrubias-Pazaran, Dorcus C Gemenet, Bodo Trognitz, Sam Ofodile, Kayode Raphael Fowobaje, Solomon Ntukidem, Trushar Shah, Simon Imoro, Jaindra Nath Tripathi, Hapson Mushoriwa, Ruth Mbabazi, Stella Salvo, John Derera
Q&A: Methods for estimating genetic gain in sub-Saharan Africa and achieving improved gains. The plant genome 17 (2) (2024)
Cynthia Idhigu Aghogho, Siraj Ismail Kayondo, Saviour J Y Eleblu, Adenike Ige, Isaac Asante, Samuel K Offei, Elizabeth Parkes, Chiedozie Egesi, Edwige Gaby Nkouaya Mbanjo, Trushar Shah, Peter A Kulakow, Ismail Y Rabbi
Genome-wide association study for yield and quality of granulated cassava processed product. The plant genome 17 (2) (2024)
Ruiqi Wang, Meixuan Wu, Xiao Zhang, Tingbo Jiang, Zhigang Wei
Methylation of microRNA genes and its effect on secondary xylem development of stem in poplar. The plant genome 17 (2) (2024)
Moussa Diouf, Yedomon Ange Bovys Zoclanclounon, Pape Adama Mboup, Diaga Diouf, Erick Malédon, Ronan Rivallan, Hâna Chair, Xiurong Zhang
Genome-wide development of intra- and inter-specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD. The plant genome 17 (2) (2024)