Jonathon L Baker (J L Baker)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 31

Top Venues

bioRxiv : the preprint server for biology

mBio

NPJ biofilms and microbiomes

mSystems

J. Craig Venter Institute

University of Rochester Medical Center (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

J. Craig Venter Institute

United States

Ruth L. Kirschstein NRSA Fellow :: Genomic Medicine

UCLA School of Dentistry

United States

Ruth L. Kirschstein NRSA Fellow :: Oral Biology

Pfizer Inc

United States

Visiting Scientist :: Vaccine Research and Early Development

Education History

University of Rochester Medical Center

United States

PHD :: Microbiology & Immunology

SUNY Geneseo

United States

BSC :: Biology

Publications

N K Brar, Fernanda C Petersen, H A Åmdal, Roger Junges, Gabriela Salvadori, Jonathon L Baker, Anna Edlund, Fernanda Cristina Petersen
Exploring ex vivo biofilm dynamics: consequences of low ampicillin concentrations on the human oral microbiome. NPJ biofilms and microbiomes 10 (1) (2024)
N K Brar, Fernanda C Petersen, H A Åmdal, Roger Junges, Gabriela Salvadori, Jonathon L Baker, Anna Edlund, Fernanda Cristina Petersen
Exploring ex vivo biofilm dynamics: consequences of low ampicillin concentrations on the human oral microbiome. NPJ biofilms and microbiomes 10 (1) (2024)
Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker, Yoshihiro Toya, Masaya Yamaguchi, Almut Heinken, Ines Thiele, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet
A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes . mSystems (2024)
N K Brar, Fernanda C Petersen, H A Åmdal, Roger Junges, Gabriela Salvadori, Jonathon L Baker, Anna Edlund, Fernanda Cristina Petersen
Exploring ex vivo biofilm dynamics: consequences of low ampicillin concentrations on the human oral microbiome. NPJ biofilms and microbiomes 10 (1) (2024)
Elisabet Bjanes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem van Groenigen
An efficient in vivo -inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies. mBio 15 (8) (2024)
N K Brar, Fernanda C Petersen, H A Åmdal, Roger Junges, Gabriela Salvadori, Jonathon L Baker, Anna Edlund, Fernanda Cristina Petersen
Exploring ex vivo biofilm dynamics: consequences of low ampicillin concentrations on the human oral microbiome. NPJ biofilms and microbiomes 10 (1) (2024)
Elisabet Bjanes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem van Groenigen
An efficient in vivo -inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies. mBio 15 (8) (2024)
Jonah Tang, Jonathon L Baker
The salivary virome during childhood dental caries. bioRxiv : the preprint server for biology (2024)
Jonah Tang, Jonathon L Baker
The salivary virome during childhood dental caries. bioRxiv : the preprint server for biology (2024)
Elisabet Bjanes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem van Groenigen
An efficient in vivo -inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies. mBio (2024)
Elisabet Bjanes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem van Groenigen
An efficient in vivo -inducible CRISPR interference system for group A Streptococcus genetic analysis and pathogenesis studies. mBio 15 (8) (2024)
Jonah Tang, Jonathon L Baker
The salivary virome during childhood dental caries. bioRxiv : the preprint server for biology (2024)
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Nidia C Castro Dos Santos, Wenyuan Shi, Jonathon L Baker, Hatice Hasturk, Xuesong He, Batbileg Bor
Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation. bioRxiv : the preprint server for biology (2023)
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Nidia C Castro Dos Santos, Wenyuan Shi, Jonathon L Baker, Hatice Hasturk, Xuesong He, Batbileg Bor
Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation. bioRxiv : the preprint server for biology (2023)
Jonathon L Baker
Illuminating the oral microbiome and its host interactions: recent Advancements in omics and bioinformatics technologies in the context of oral microbiome research. FEMS microbiology reviews (2023)
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Nidia C Castro Dos Santos, Wenyuan Shi, Jonathon L Baker, Hatice Hasturk, Xuesong He, Batbileg Bor
Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation. bioRxiv : the preprint server for biology (2023)
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Nidia C Castro Dos Santos, Wenyuan Shi, Jonathon L Baker, Hatice Hasturk, Xuesong He, Batbileg Bor
Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation. bioRxiv : the preprint server for biology (2023)
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Nidia C Castro Dos Santos, Wenyuan Shi, Jonathon L Baker, Hatice Hasturk, Xuesong He, Batbileg Bor
Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation. bioRxiv : the preprint server for biology (2023)
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Nidia C Castro Dos Santos, Wenyuan Shi, Jonathon L Baker, Hatice Hasturk, Xuesong He, Batbileg Bor
Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation. bioRxiv : the preprint server for biology (2023)
Jonathon L Baker, Jessica L Mark Welch, Kathryn M Kauffman, Jeffrey S McLean, Xuesong He
The oral microbiome: diversity, biogeography and human health. Nature reviews. Microbiology (2023)
Elizabeth L Tinder, Roberta C Faustoferri, Andrew A Buckley, Robert G Quivey, Jonathon L Baker
Analysis of the Streptococcus mutans Proteome during Acid and Oxidative Stress Reveals Modules of Protein Coexpression and an Expanded Role for the TreR Transcriptional Regulator. mSystems 7 (2) (2022)
Jonathon L Baker
Complete Genome Sequence of " Candidatus Nanosynbacter" Strain HMT-348_TM7c-JB, a Member of Saccharibacteria Clade G1. Microbiology resource announcements 11 (5) (2022)
Jonathon L Baker, Xiaoyu Tang, Sandra LaBonte, Carla C Uranga, Anna Edlund
mucG, mucH, and mucI Modulate Production of Mutanocyclin and Reutericyclins in Streptococcus mutans B04Sm5. Journal of bacteriology 204 (5) (2022)
Jonathon L Baker
Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples. mSystems 7 (5) (2022)
Cynthia B Silveira, Ana G Cobián-Güemes, Carla Uranga, Jonathon L Baker, Anna Edlund, Forest Rohwer, Douglas Conrad
Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome. International journal of molecular sciences 22 (21) (2021)
Jonathon L Baker, Anna Edlund
Composite Long- and Short-Read Sequencing Delivers a Complete Genome Sequence of B04Sm5, a Reutericyclin- and Mutanocyclin-Producing Strain of Streptococcus mutans. Microbiology resource announcements 9 (47) (2020)
Jonathon L Baker, Sarah Saputo, Roberta C Faustoferri, Robert G Quivey
Streptococcus mutans SpxA2 relays the signal of cell envelope stress from LiaR to effectors that maintain cell wall and membrane homeostasis. Molecular oral microbiology 35 (3) (2020)
Stephanie S Momeni, S M Beno, Jonathon L Baker, Anna Edlund, T Ghazal, N K Childers, H Wu
Caries-Associated Biosynthetic Gene Clusters in Streptococcus mutans. Journal of dental research 99 (8) (2020)
Jonathon L Baker, James T Morton, Márcia Dinis, Ruth Alvarez, Nini C Tran, Rob Knight, Anna Edlund
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules. Genome research 31 (1) (2020)
Jonathon L Baker, Erik L Hendrickson, Xiaoyu Tang, Renate Lux, Xuesong He, Anna Edlund, Jeffrey S McLean, Wenyuan Shi
Klebsiella and Providencia emerge as lone survivors following long-term starvation of oral microbiota. Proceedings of the National Academy of Sciences of the United States of America 116 (17) (2019)
Jonathon L Baker, X He, W Shi
Precision Reengineering of the Oral Microbiome for Caries Management. Advances in dental research 30 (2) (2019)

Jonathon L Baker.css-eqlu8i{font-size:small;padding-left:4px;} (J L Baker)

Publication Activity (10 Years)

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Top Venues

Jonathon L Baker (J L Baker)