Joshua H Siegle (Josh H Siegle)

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 15

Top Topics

Functional Connectivity

Fluorescence Imaging

Top Venues

Nature communications

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Atle E Rimehaug, Alexander J Stasik, Espen Hagen, Yazan N Billeh, Joshua H Siegle, Kael Dai, Shawn R Olsen, Christof Koch, Gaute Tomas Einevoll, Anton Arkhipov
Uncovering circuit mechanisms of current sinks and sources with biophysical simulations of primary visual cortex. eLife 12 (2023)
Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner A H Van Geit, Clayton P Mosher, Shawn R Olsen, Costas A Anastassiou
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex. Nature communications 14 (1) (2023)
Jonathan P Newman, Jie Zhang, Aarón Cuevas-López, Nicholas J Miller, Takato Honda, Marie-Sophie H van der Goes, Alexandra H Leighton, Filipe Carvalho, Gonçalo Lopes, Anna A Lakunina, Joshua H Siegle, Mark T Harnett, Matthew A Wilson, Jakob Voigts
A unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior. bioRxiv : the preprint server for biology (2023)
Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner A H Van Geit, Clayton P Mosher, Shawn R Olsen, Costas A Anastassiou
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex. Nature communications 14 (1) (2023)
Saskia E J de Vries, Joshua H Siegle, Christof Koch
Sharing neurophysiology data from the Allen Brain Observatory. eLife 12 (2023)
Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner A H Van Geit, Clayton P Mosher, Shawn R Olsen, Costas A Anastassiou
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex. Nature communications 14 (1) (2023)
Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner A H Van Geit, Clayton P Mosher, Shawn R Olsen, Costas A Anastassiou
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex. Nature communications 14 (1) (2023)
Zhiwen Ye, Andrew M Shelton, Jordan R Shaker, Julien Boussard, Jennifer Colonell, Sahar Manavi, Susu Chen, Charlie Windolf, Cole Lincoln Hurwitz, Tomoyuki Namima, Federico Pedraja, Shahaf Weiss, Bogdan C Raducanu, Torbjørn V Ness, Gaute Tomas Einevoll, Gilles Laurent, Nathaniel B Sawtell, Wyeth Bair, Anitha Pasupathy, Carolina Mora Lopez, Barun Dutta, Liam Paninski, Joshua H Siegle, Christof Koch, Shawn R Olsen, Timothy D Harris, Nicholas A Steinmetz
Ultra-high density electrodes improve detection, yield, and cell type specificity of brain recordings. bioRxiv : the preprint server for biology (2023)
Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner A H Van Geit, Clayton P Mosher, Shawn R Olsen, Costas A Anastassiou
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex. Nature communications 14 (1) (2023)
Yu Chen, Hannah Douglas, Bryan J Medina, Motolani Olarinre, Joshua H Siegle, Robert E Kass
Population burst propagation across interacting areas of the brain. Journal of neurophysiology 128 (6) (2022)
Joshua H Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel J Millman, Gabriel Koch Ocker, Shiella Caldejon, Linzy Casal, Andy Cho, Daniel J Denman, Séverine Durand, Peter A Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jérôme Lecoq, Chelsea Nayan, Kiet Ngo, Philip R Nicovich, Kat North, Tamina K Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R Olsen, Christof Koch, Michael A Buice, Saskia E J de Vries
Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology. eLife 10 (2021)
Natalie Klein, Joshua H Siegle, Tobias Teichert, Robert E Kass
Cross-population coupling of neural activity based on Gaussian process current source densities. PLoS computational biology 17 (11) (2021)
Joshua H Siegle, Xiaoxuan Jia, Séverine Durand, Sam Gale, Corbett Bennett, Nile Graddis, Greggory Heller, Tamina K Ramirez, Hannah Choi, Jennifer A Luviano, Peter A Groblewski, Ruweida Ahmed, Anton Arkhipov, Amy Bernard, Yazan N Billeh, Dillan Brown, Michael A Buice, Nicolas Cain, Shiella Caldejon, Linzy Casal, Andrew Cho, Maggie Chvilicek, Timothy C Cox, Kael Dai, Daniel J Denman, Saskia E J de Vries, Roald Dietzman, Luke Esposito, Colin Farrell, David Feng, John Galbraith, Marina Garrett, Emily C Gelfand, Nicole Hancock, Julie A Harris, Robert Howard, Brian Hu, Ross Hytnen, Ramakrishnan Iyer, Erika Jessett, Katelyn Johnson, India Kato, Justin Kiggins, Sophie Lambert, Jerome Lecoq, Peter Ledochowitsch, Jung Hoon Lee, Arielle Leon, Yang Li, Elizabeth Liang, Fuhui Long, Kyla Mace, Jose Melchior, Daniel Millman, Tyler Mollenkopf, Chelsea Nayan, Lydia Ng, Kiet Ngo, Thuyahn Nguyen, Philip R Nicovich, Kat North, Gabriel Koch Ocker, Doug Ollerenshaw, Michael Oliver, Marius Pachitariu, Jed Perkins, Melissa Reding, David Reid, Miranda Robertson, Kara Ronellenfitch, Sam Seid, Cliff Slaughterbeck, Michelle Stoecklin, David Sullivan, Ben Sutton, Jackie Swapp, Carol Thompson, Kristen Turner, Wayne Wakeman, Jennifer D Whitesell, Derric Williams, Ali Williford, Rob Young, Hongkui Zeng, Sarah Naylor, John W Phillips, R Clay Reid, Samuel D Gale, Shawn R Olsen, Christof Koch
Survey of spiking in the mouse visual system reveals functional hierarchy. Nature 592 (7852) (2021)
Jérôme A Lecoq, Michael Oliver, Joshua H Siegle, Natalia Orlova, Peter Ledochowitsch, Christof Koch
Removing independent noise in systems neuroscience data using DeepInterpolation. Nature methods 18 (11) (2021)
Alessio Paolo Buccino, Cole Lincoln Hurwitz, Samuel Garcia, Jeremy Magland, Joshua H Siegle, Roger Hurwitz, Matthias H Hennig
SpikeInterface, a unified framework for spike sorting. eLife 9 (2020)