Marius Pachitariu

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 17

Top Topics

Convolutional Neural Network

Top Venues

Science (New York, N.Y.)

The Journal of neuroscience : the official journal of the Society for Neuroscience

PLoS computational biology

This page only lists publications with an associated author ORCID identifier.

Publications

Marius Pachitariu, Shashwat Sridhar, Jacob Pennington, Carsen Stringer
Spike sorting with Kilosort4. Nature methods 21 (5) (2024)
Marius Pachitariu, Shashwat Sridhar, Jacob Pennington, Carsen Stringer
Spike sorting with Kilosort4. Nature methods 21 (5) (2024)
Marius Pachitariu, Shashwat Sridhar, Jacob Pennington, Carsen Stringer
Spike sorting with Kilosort4. Nature methods (2024)
Marius Pachitariu, Shashwat Sridhar, Jacob Pennington, Carsen Stringer
Spike sorting with Kilosort4. Nature methods 21 (5) (2024)
Stefanos Stagkourakis, Giada Spigolon, Markus Marks, Michael T Feyder, Joseph Kim, Pietro Perona, Marius Pachitariu, David J Anderson
Distributed representations of innate behaviors in the hypothalamus do not predict specialized functional centers. bioRxiv : the preprint server for biology (2023)
Atika Syeda, Lin Zhong, Renee Tung, Will Long, Marius Pachitariu, Carsen Stringer
Facemap: a framework for modeling neural activity based on orofacial tracking. Nature neuroscience (2023)
Marius Pachitariu, Carsen Stringer
Cellpose 2.0: how to train your own model. Nature methods 19 (12) (2022)
Biraj Pandey, Marius Pachitariu, Bingni W Brunton, Kameron Decker Harris
Structured random receptive fields enable informative sensory encodings. PLoS computational biology 18 (10) (2022)
Nicholas A Steinmetz, Çağatay Aydin, Anna Lebedeva, Michael Okun, Marius Pachitariu, Marius Bauza, Maxime Beau, Jai Bhagat, Claudia Böhm, Martijn Broux, Susu Chen, Jennifer Colonell, Richard J Gardner, Bill Karsh, Fabian Kloosterman, Dimitar Kostadinov, Carolina Mora-Lopez, John O'Callaghan, Junchol Park, Jan Putzeys, Britton Sauerbrei, Rik J J van Daal, Abraham Z Vollan, Shiwei Wang, Marleen Welkenhuysen, Zhiwen Ye, Joshua Tate Dudman, Barundeb Dutta, Adam W Hantman, Kenneth D Harris, Albert K Lee, Edvard I Moser, John O'Keefe, Alfonso Renart, Karel Svoboda, Michael Häusser, Sebastian Haesler, Tatsuo K Sato, Timothy D Harris
Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings. Science (New York, N.Y.) 372 (6539) (2021)
Joshua H Siegle, Xiaoxuan Jia, Séverine Durand, Sam Gale, Corbett Bennett, Nile Graddis, Greggory Heller, Tamina K Ramirez, Hannah Choi, Jennifer A Luviano, Peter A Groblewski, Ruweida Ahmed, Anton Arkhipov, Amy Bernard, Yazan N Billeh, Dillan Brown, Michael A Buice, Nicolas Cain, Shiella Caldejon, Linzy Casal, Andrew Cho, Maggie Chvilicek, Timothy C Cox, Kael Dai, Daniel J Denman, Saskia E J de Vries, Roald Dietzman, Luke Esposito, Colin Farrell, David Feng, John Galbraith, Marina Garrett, Emily C Gelfand, Nicole Hancock, Julie A Harris, Robert Howard, Brian Hu, Ross Hytnen, Ramakrishnan Iyer, Erika Jessett, Katelyn Johnson, India Kato, Justin Kiggins, Sophie Lambert, Jerome Lecoq, Peter Ledochowitsch, Jung Hoon Lee, Arielle Leon, Yang Li, Elizabeth Liang, Fuhui Long, Kyla Mace, Jose Melchior, Daniel Millman, Tyler Mollenkopf, Chelsea Nayan, Lydia Ng, Kiet Ngo, Thuyahn Nguyen, Philip R Nicovich, Kat North, Gabriel Koch Ocker, Doug Ollerenshaw, Michael Oliver, Marius Pachitariu, Jed Perkins, Melissa Reding, David Reid, Miranda Robertson, Kara Ronellenfitch, Sam Seid, Cliff Slaughterbeck, Michelle Stoecklin, David Sullivan, Ben Sutton, Jackie Swapp, Carol Thompson, Kristen Turner, Wayne Wakeman, Jennifer D Whitesell, Derric Williams, Ali Williford, Rob Young, Hongkui Zeng, Sarah Naylor, John W Phillips, R Clay Reid, Samuel D Gale, Shawn R Olsen, Christof Koch
Survey of spiking in the mouse visual system reveals functional hierarchy. Nature 592 (7852) (2021)
Kyu Hyun Lee, Yu-Li Ni, Jennifer Colonell, Bill Karsh, Jan Putzeys, Marius Pachitariu, Timothy D Harris, Markus Meister
Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes. Nature communications 12 (1) (2021)
Anne-Kathrin Eiselt, Susu Chen, Jim Chen, Jon Arnold, Tahnbee Kim, Marius Pachitariu, Scott M Sternson
Hunger or thirst state uncertainty is resolved by outcome evaluation in medial prefrontal cortex to guide decision-making. Nature neuroscience 24 (7) (2021)
Carsen Stringer, Tim Wang, Michalis Michaelos, Marius Pachitariu
Cellpose: a generalist algorithm for cellular segmentation. Nature methods 18 (1) (2020)
William E Allen, Michael Z Chen, Nandini Pichamoorthy, Rebecca H Tien, Marius Pachitariu, Liqun Luo, Karl Deisseroth
Thirst regulates motivated behavior through modulation of brainwide neural population dynamics. Science (New York, N.Y.) 364 (6437) (2019)
Carsen Stringer, Marius Pachitariu, Nicholas A Steinmetz, Charu Bai Reddy, Tatsuo K Sato, Kenneth D Harris
Spontaneous behaviors drive multidimensional, brainwide activity. Science (New York, N.Y.) 364 (6437) (2019)
Marius Pachitariu, Carsen Stringer, Kenneth D Harris
Robustness of Spike Deconvolution for Neuronal Calcium Imaging. The Journal of neuroscience : the official journal of the Society for Neuroscience 38 (37) (2018)
Philipp Berens, Jeremy Freeman, Thomas Deneux, Nikolay Chenkov, Thomas McColgan, Artur Speiser, Jakob H Macke, Srinivas C Turaga, Patrick J Mineault, Peter Rupprecht, Stephan Gerhard, Rainer W Friedrich, Johannes Friedrich, Liam Paninski, Marius Pachitariu, Kenneth D Harris, Ben Bolte, Timothy A Machado, Dario Ringach, Jasmine Stone, Luke E Rogerson, Nicolas J Sofroniew, Jacob Reimer, Emmanouil Froudarakis, Thomas Euler, Miroslav Román Rosón, Lucas Theis, Andreas Savas Tolias, Matthias Bethge
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLoS computational biology 14 (5) (2018)
Marius Pachitariu, Dmitry R Lyamzin, Maneesh Sahani, Nicholas A Lesica
State-dependent population coding in primary auditory cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience 35 (5) (2015)