Juergen Pleiss (Jürgen Pleiss)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 38

Top Topics

Molecular Dynamics Simulations

Structural Basis

Hydrogen Peroxide

Top Venues

Communications chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Philipp Schnee, Juergen Pleiss, Albert Jeltsch
Approaching the catalytic mechanism of protein lysine methyltransferases by biochemical and simulation techniques. Critical reviews in biochemistry and molecular biology 59 (1-2) (2024)
Sara Weirich, Denis Kusevic, Philipp Schnee, Jessica Reiter, Juergen Pleiss, Albert Jeltsch
Discovery of NSD2 non-histone substrates and design of a super-substrate. Communications biology 7 (1) (2024)
Sara Weirich, Denis Kusevic, Philipp Schnee, Jessica Reiter, Juergen Pleiss, Albert Jeltsch
Discovery of NSD2 non-histone substrates and design of a super-substrate. Communications biology 7 (1) (2024)
Philipp Schnee, Juergen Pleiss, Albert Jeltsch
Approaching the catalytic mechanism of protein lysine methyltransferases by biochemical and simulation techniques. Critical reviews in biochemistry and molecular biology (2024)
Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E Lagerman, Andreas Sebastian Bommarius, Amalie Vang Høst, John M Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T Bergmann, Johann M Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, Juergen Pleiss
EnzymeML: seamless data flow and modeling of enzymatic data. Nature methods 20 (3) (2023)
Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E Lagerman, Andreas Sebastian Bommarius, Amalie Vang Høst, John M Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T Bergmann, Johann M Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, Juergen Pleiss
EnzymeML: seamless data flow and modeling of enzymatic data. Nature methods (2023)
Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E Lagerman, Andreas Sebastian Bommarius, Amalie Vang Høst, John M Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T Bergmann, Johann M Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, Juergen Pleiss
EnzymeML: seamless data flow and modeling of enzymatic data. Nature methods 20 (3) (2023)
Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E Lagerman, Andreas Sebastian Bommarius, Amalie Vang Høst, John M Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T Bergmann, Johann M Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, Juergen Pleiss
EnzymeML: seamless data flow and modeling of enzymatic data. Nature methods 20 (3) (2023)
Simone Lauterbach, Hannah Dienhart, Jan Range, Stephan Malzacher, Jan-Dirk Spöring, Dörte Rother, Maria Filipa Pinto, Pedro Martins, Colton E Lagerman, Andreas Sebastian Bommarius, Amalie Vang Høst, John M Woodley, Sandile Ngubane, Tukayi Kudanga, Frank T Bergmann, Johann M Rohwer, Dorothea Iglezakis, Andreas Weidemann, Ulrike Wittig, Carsten Kettner, Neil Swainston, Santiago Schnell, Juergen Pleiss
EnzymeML: seamless data flow and modeling of enzymatic data. Nature methods 20 (3) (2023)
Philipp Schnee, Michel Choudalakis, Sara Weirich, Mina S Khella, Henrique Carvalho, Juergen Pleiss, Albert Jeltsch
Mechanistic basis of the increased methylation activity of the SETD2 protein lysine methyltransferase towards a designed super-substrate peptide. Communications chemistry 5 (1) (2022)
Patrick C F Buchholz, Golo Feuerriegel, Hongli Zhang, Pablo Perez-Garcia, Lena-Luisa Nover, Jennifer Chow, Wolfgang J Streit, Juergen Pleiss
Plastics degradation by hydrolytic enzymes: The plastics-active enzymes database-PAZy. Proteins 90 (7) (2022)
Philipp Schnee, Michel Choudalakis, Sara Weirich, Mina S Khella, Henrique Carvalho, Juergen Pleiss, Albert Jeltsch
Mechanistic basis of the increased methylation activity of the SETD2 protein lysine methyltransferase towards a designed super-substrate peptide. Communications chemistry 5 (1) (2022)
Stefanie Royek, Martin Bayer, Jens Pfannstiel, Juergen Pleiss, Gwyneth C Ingram, Annick Stintzi, Andreas Schaller
Processing of a plant peptide hormone precursor facilitated by posttranslational tyrosine sulfation. Proceedings of the National Academy of Sciences of the United States of America 119 (16) (2022)
Patrick C F Buchholz, Bert van Loo, Bernard D G Eenink, Erich Bornberg-Bauer, Juergen Pleiss
Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation. Journal of the Royal Society, Interface 18 (184) (2021)
Jan Range, Colin Halupczok, Jens Lohmann, Neil Swainston, Carsten Kettner, Frank T Bergmann, Andreas Weidemann, Ulrike Wittig, Santiago Schnell, Juergen Pleiss
EnzymeML - a data exchange format for biocatalysis and enzymology. The FEBS journal (2021)
Peter Stockinger, Niels Borlinghaus, Mahima Sharma, Benjamin Aberle, Gideon Grogan, Juergen Pleiss, Bettina M Nestl
Inverting the Stereoselectivity of an NADH-Dependent Imine-Reductase Variant. ChemCatChem 13 (24) (2021)
Henrique F Carvalho, Valerio Ferrario, Juergen Pleiss
Molecular Mechanism of Methanol Inhibition in CALB-Catalyzed Alcoholysis: Analyzing Molecular Dynamics Simulations by a Markov State Model. Journal of chemical theory and computation 17 (10) (2021)
Marco Orlando, Patrick C F Buchholz, Marina Lotti, Juergen Pleiss
The GH19 Engineering Database: Sequence diversity, substrate scope, and evolution in glycoside hydrolase family 19. PloS one 16 (10) (2021)
Mohammad Faheem, Charles J Zhang, Monica N Morris, Juergen Pleiss, Peter Oelschlaeger
Role of Synonymous Mutations in the Evolution of TEM β-Lactamase Genes. Antimicrobial agents and chemotherapy 65 (6) (2021)
Gudrun Gygli, Xinmeng Xu, Juergen Pleiss
Meta-analysis of viscosity of aqueous deep eutectic solvents and their components. Scientific reports 10 (1) (2020)
Eko Aditya Rifai, Valerio Ferrario, Juergen Pleiss, Daan P Geerke
Combined Linear Interaction Energy and Alchemical Solvation Free-Energy Approach for Protein-Binding Affinity Computation. Journal of chemical theory and computation 16 (2) (2020)
Caroline Lohoff, Patrick C F Buchholz, Marilize Le Roes-Hill, Juergen Pleiss
Expansin Engineering Database: A navigation and classification tool for expansins and homologues. Proteins 89 (2) (2020)
Maike Gräff, Patrick C F Buchholz, Marilize Le Roes-Hill, Juergen Pleiss
Multicopper oxidases: modular structure, sequence space, and evolutionary relationships. Proteins 88 (10) (2020)
Gudrun Gygli, Juergen Pleiss
Simulation Foundry: Automated and F.A.I.R. Molecular Modeling. Journal of chemical information and modeling 60 (4) (2020)
Peter Stockinger, Sebastian Roth, Michael Müller, Juergen Pleiss
Systematic Evaluation of Imine-Reducing Enzymes: Common Principles in Imine Reductases, β-Hydroxy Acid Dehydrogenases, and Short-Chain Dehydrogenases/ Reductases. Chembiochem : a European journal of chemical biology 21 (18) (2020)
Patrick C F Buchholz, Valerio Ferrario, Martina Pohl, Lucia Gardossi, Juergen Pleiss
Navigating within thiamine diphosphate-dependent decarboxylases: Sequences, structures, functional positions, and binding sites. Proteins 87 (9) (2019)
Valerio Ferrario, Mona Fischer, Yushan Zhu, Juergen Pleiss
Modelling of substrate access and substrate binding to cephalosporin acylases. Scientific reports 9 (1) (2019)
Tabea L Bauer, Patrick C F Buchholz, Juergen Pleiss
The modular structure of α/β-hydrolases. The FEBS journal 287 (5) (2019)
Jörg Baz, Christoph Held, Juergen Pleiss, Niels Hansen
Thermophysical properties of glyceline-water mixtures investigated by molecular modelling. Physical chemistry chemical physics : PCCP 21 (12) (2019)
Maike Gräff, Patrick C F Buchholz, Peter Stockinger, Bettina Bommarius, Andreas S Bommarius, Juergen Pleiss
The Short-chain Dehydrogenase/Reductase Engineering Database (SDRED): A classification and analysis system for a highly diverse enzyme family. Proteins 87 (6) (2019)
Patrick C F Buchholz, Catharina Zeil, Juergen Pleiss
The scale-free nature of protein sequence space. PloS one 13 (8) (2018)
Patrick C F Buchholz, Rüdiger Ohs, Antje C Spiess, Juergen Pleiss
Progress Curve Analysis Within BioCatNet: Comparing Kinetic Models for Enzyme-Catalyzed Self-Ligation. Biotechnology journal 14 (3) (2018)
Marina Lotti, Juergen Pleiss, Francisco Valero, Pau Ferrer
Enzymatic Production of Biodiesel: Strategies to Overcome Methanol Inactivation. Biotechnology journal 13 (5) (2018)
Oliver Buß, Patrick C F Buchholz, Maike Gräff, Peter Klausmann, Jens Rudat, Juergen Pleiss
The ω-transaminase engineering database (oTAED): A navigation tool in protein sequence and structure space. Proteins 86 (5) (2018)
Patrick C F Buchholz, Silvia Fademrecht, Juergen Pleiss
Percolation in protein sequence space. PloS one 12 (12) (2017)
Sven P Benson, Juergen Pleiss
Self-Assembly Nanostructures of Triglyceride-Water Interfaces Determine Functional Conformations of Candida antarctica Lipase B. Langmuir : the ACS journal of surfaces and colloids 33 (12) (2017)
Mónica Martínez-Martínez, Cristina Coscolín, Gerard Santiago, Jennifer Chow, Peter J Stogios, Rafael Bargiela, Christoph Gertler, José Navarro-Fernández, Alexander Bollinger, Stephan Thies, Celia Méndez-García, Ana Popovic, Greg Brown, Tatyana N Chernikova, Antonio García-Moyano, Gro E K Bjerga, Pablo Pérez-García, Tran Hai, Mercedes V Del Pozo, Runar Stokke, Ida H Steen, Hong Cui, Xiaohui Xu, Boguslaw P Nocek, María Alcaide, Marco Distaso, Victoria Mesa, Ana I Peláez, Jesús Sánchez, Patrick C F Buchholz, Juergen Pleiss, Antonio Fernández-Guerra, Frank O Glöckner, Olga V Golyshina, Michail M Yakimov, Alexei Savchenko, Karl-Erich Jaeger, Alexander F Yakunin, Wolfgang R Streit, Peter N Golyshin, Victor Guallar, Manuel Ferrer, null The Inmare Consortium
Determinants and Prediction of Esterase Substrate Promiscuity Patterns. ACS chemical biology 13 (1) (2017)
Qi Zhang, Lorenzo Catti, Juergen Pleiss, Konrad Tiefenbacher
Terpene Cyclizations inside a Supramolecular Catalyst: Leaving-Group-Controlled Product Selectivity and Mechanistic Studies. Journal of the American Chemical Society 139 (33) (2017)