Masad J Damha (Masad Damha)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 40

Top Topics

Molecular Dynamics Simulations

Single Molecule

Capillary Electrophoresis

Top Venues

Nature communications

Nucleic acids research

Communications chemistry

Chemistry (Weinheim an der Bergstrasse, Germany)

This page only lists publications with an associated author ORCID identifier.

Publications

Luke Buerer, Nathaniel E Clark, Anastasia Welch, Chaorui Duan, Allison J Taggart, Brittany A Townley, Jing Wang, Rachel Soemedi, Stephen Rong, Chien-Ling Lin, Yi Zeng, Adam Katolik, Jonathan P Staley, Masad J Damha, Nima Mosammaparast, William G Fairbrother
The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Nature communications 15 (1) (2024)
Roberto El-Khoury, Cristina Cabrero, Santiago Movilla, Harneesh Kaur, David Friedland, Arnau Domínguez, James D Thorpe, Morgane Roman, Modesto Orozco, Carlos González, Masad J Damha
Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions. Nucleic acids research (2024)
Luke Buerer, Nathaniel E Clark, Anastasia Welch, Chaorui Duan, Allison J Taggart, Brittany A Townley, Jing Wang, Rachel Soemedi, Stephen Rong, Chien-Ling Lin, Yi Zeng, Adam Katolik, Jonathan P Staley, Masad J Damha, Nima Mosammaparast, William G Fairbrother
The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Nature communications 15 (1) (2024)
Pavlína Víšková, Eva Ištvánková, Jan Ryneš, Šimon Džatko, Tomas Loja, Martina Lenarčič Živković, Riccardo Rigo, Roberto El-Khoury, Israel Serrano-Chacón, Masad J Damha, Carlos González, Jean-Louis Mergny, Silvie Foldynová-Trantírková, Lukas Trantirek
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells. Nature communications 15 (1) (2024)
Pavlína Víšková, Eva Ištvánková, Jan Ryneš, Šimon Džatko, Tomas Loja, Martina Lenarčič Živković, Riccardo Rigo, Roberto El-Khoury, Israel Serrano-Chacón, Masad J Damha, Carlos González, Jean-Louis Mergny, Silvie Foldynová-Trantírková, Lukas Trantirek
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells. Nature communications 15 (1) (2024)
Roberto El-Khoury, Cristina Cabrero, Santiago Movilla, Harneesh Kaur, David Friedland, Arnau Domínguez, James D Thorpe, Morgane Roman, Modesto Orozco, Carlos González, Masad J Damha
Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions. Nucleic acids research 52 (13) (2024)
Luke Buerer, Nathaniel E Clark, Anastasia Welch, Chaorui Duan, Allison J Taggart, Brittany A Townley, Jing Wang, Rachel Soemedi, Stephen Rong, Chien-Ling Lin, Yi Zeng, Adam Katolik, Jonathan P Staley, Masad J Damha, Nima Mosammaparast, William G Fairbrother
The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Nature communications 15 (1) (2024)
Luke Buerer, Nathaniel E Clark, Anastasia Welch, Chaorui Duan, Allison J Taggart, Brittany A Townley, Jing Wang, Rachel Soemedi, Stephen Rong, Chien-Ling Lin, Yi Zeng, Adam Katolik, Jonathan P Staley, Masad J Damha, Nima Mosammaparast, William G Fairbrother
The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Nature communications 15 (1) (2024)
Luke Buerer, Nathaniel E Clark, Anastasia Welch, Chaorui Duan, Allison J Taggart, Brittany A Townley, Jing Wang, Rachel Soemedi, Stephen Rong, Chien-Ling Lin, Yi Zeng, Adam Katolik, Jonathan P Staley, Masad J Damha, Nima Mosammaparast, William G Fairbrother
The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Nature communications 15 (1) (2024)
Roberto El-Khoury, Cristina Cabrero, Santiago Movilla, Harneesh Kaur, David Friedland, Arnau Domínguez, James D Thorpe, Morgane Roman, Modesto Orozco, Carlos González, Masad J Damha
Formation of left-handed helices by C2'-fluorinated nucleic acids under physiological salt conditions. Nucleic acids research 52 (13) (2024)
Pavlína Víšková, Eva Ištvánková, Jan Ryneš, Šimon Džatko, Tomas Loja, Martina Lenarčič Živković, Riccardo Rigo, Roberto El-Khoury, Israel Serrano-Chacón, Masad J Damha, Carlos González, Jean-Louis Mergny, Silvie Foldynová-Trantírková, Lukas Trantirek
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells. Nature communications 15 (1) (2024)
Pavlína Víšková, Eva Ištvánková, Jan Ryneš, Šimon Džatko, Tomas Loja, Martina Lenarčič Živković, Riccardo Rigo, Roberto El-Khoury, Israel Serrano-Chacón, Masad J Damha, Carlos González, Jean-Louis Mergny, Silvie Foldynová-Trantírková, Lukas Trantirek
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells. Nature communications 15 (1) (2024)
Sunit Kumar Jana, Masad J Damha
Synthesis of Seven-Membered Ring Nucleosides and Serendipitous Simmons-Smith O -Glycosylation. Organic letters 26 (24) (2024)
Sunit Kumar Jana, Masad J Damha
Synthesis of Seven-Membered Ring Nucleosides and Serendipitous Simmons-Smith O -Glycosylation. Organic letters (2024)
Pavlína Víšková, Eva Ištvánková, Jan Ryneš, Šimon Džatko, Tomas Loja, Martina Lenarčič Živković, Riccardo Rigo, Roberto El-Khoury, Israel Serrano-Chacón, Masad J Damha, Carlos González, Jean-Louis Mergny, Silvie Foldynová-Trantírková, Lukas Trantirek
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells. Nature communications 15 (1) (2024)
Roberto El-Khoury, Veronica Macaluso, Christopher Hennecker, Anthony K Mittermaier, Modesto Orozco, Carlos González, Miguel Garavís, Masad J Damha
i-Motif folding intermediates with zero-nucleotide loops are trapped by 2'-fluoroarabinocytidine via F···H and O···H hydrogen bonds. Communications chemistry 6 (1) (2023)
Roberto El-Khoury, Veronica Macaluso, Christopher Hennecker, Anthony K Mittermaier, Modesto Orozco, Carlos González, Miguel Garavís, Masad J Damha
i-Motif folding intermediates with zero-nucleotide loops are trapped by 2'-fluoroarabinocytidine via F···H and O···H hydrogen bonds. Communications chemistry 6 (1) (2023)
Roberto El-Khoury, Masad J Damha
End-ligation can dramatically stabilize i-motifs at neutral pH. Chemical communications (Cambridge, England) (2023)
Roberto El-Khoury, Morgane Roman, Hala Abou Assi, Aaron L Moye, Tracy M Bryan, Masad J Damha
Telomeric i-motifs and C-strands inhibit parallel G-quadruplex extension by telomerase. Nucleic acids research (2023)
Roberto El-Khoury, Veronica Macaluso, Christopher Hennecker, Anthony K Mittermaier, Modesto Orozco, Carlos González, Miguel Garavís, Masad J Damha
i-Motif folding intermediates with zero-nucleotide loops are trapped by 2'-fluoroarabinocytidine via F···H and O···H hydrogen bonds. Communications chemistry 6 (1) (2023)
Roberto El-Khoury, Masad J Damha
End-ligation can dramatically stabilize i-motifs at neutral pH. Chemical communications (Cambridge, England) 59 (25) (2023)
Roberto El-Khoury, Masad J Damha
End-ligation can dramatically stabilize i-motifs at neutral pH. Chemical communications (Cambridge, England) 59 (25) (2023)
Luke Buerer, Nathaniel Clark, Anastasia Welch, Chaorui Duan, Allison Taggart, Brittany Townley, Jing Wang, Rachel Soemedi, Stephen Rong, Chien-Ling Lin, Yi Zeng, Adam Katolik, Jonathan Staley, Masad J Damha, Nima Mosammaparast, William Fairbrother
The debranching enzyme Dbr1 regulates lariat turnover and intron splicing. Research square (2023)
Christophe Lachance-Brais, Mostafa Rammal, Jathavan Asohan, Adam Katolik, Xin Luo, Daniel Saliba, Antranik Jonderian, Masad J Damha, Matthew J Harrington, Hanadi F Sleiman
Small Molecule-Templated DNA Hydrogel with Record Stiffness Integrates and Releases DNA Nanostructures and Gene Silencing Nucleic Acids. Advanced science (Weinheim, Baden-Wurttemberg, Germany) (2023)
Sunit Kumar Jana, S Harikrishna, Sruthi Sudhakar, Roberto El-Khoury, Pushpangadan Indira Pradeepkumar, Masad J Damha
Nucleoside Analogues with a Seven-Membered Sugar Ring: Synthesis and Structural Compatibility in DNA-RNA Hybrids. The Journal of organic chemistry 87 (5) (2022)
Nathaniel E Clark, Adam Katolik, Anastasia Welch, Christoph Schorl, Stephen P Holloway, Jonathan P Schuermann, P John Hart, Alexander B Taylor, Masad J Damha, William G Fairbrother
Crystal Structure of the RNA Lariat Debranching Enzyme Dbr1 with Hydrolyzed Phosphorothioate RNA Product. Biochemistry (2022)
Luke K McKenzie, Roberto El-Khoury, James D Thorpe, Masad J Damha, Marcel R Hollenstein
Recent progress in non-native nucleic acid modifications. Chemical Society reviews 50 (8) (2021)
Eman A Ageely, Ramadevi Chilamkurthy, Sunit Jana, Leonora Abdullahu, Daniel O'Reilly, Philip J Jensik, Masad J Damha, Keith T Gagnon
Gene editing with CRISPR-Cas12a guides possessing ribose-modified pseudoknot handles. Nature communications 12 (1) (2021)
Roberto El-Khoury, Masad J Damha
2'-Fluoro-arabinonucleic Acid (FANA): A Versatile Tool for Probing Biomolecular Interactions. Accounts of chemical research 54 (9) (2021)
James D Thorpe, Daniel O'Reilly, Tomislav Friščić, Masad J Damha
Mechanochemical Synthesis of Short DNA Fragments. Chemistry (Weinheim an der Bergstrasse, Germany) 26 (41) (2020)
Bishnu P Paudel, Aaron Lavel Moye, Hala Abou Assi, Roberto El-Khoury, Scott B Cohen, Jessica K Holien, Monica L Birrento, Siritron Samosorn, Kamthorn Intharapichai, Christopher G Tomlinson, Marie-Paule Teulade-Fichou, Carlos González, Jennifer L Beck, Masad J Damha, Antoine M van Oijen, Tracy M Bryan
A mechanism for the extension and unfolding of parallel telomeric G-quadruplexes by human telomerase at single-molecule resolution. eLife 9 (2020)
Jory Lietard, Masad J Damha, Mark Manuel Somoza
Large-Scale Photolithographic Synthesis of Chimeric DNA/RNA Hairpin Microarrays To Explore Sequence Specificity Landscapes of RNase HII Cleavage. Biochemistry 58 (44) (2019)
Fabienne Levi-Acobas, Adam Katolik, Pascal Röthlisberger, Thomas Cokelaer, Ivo Sarac, Masad J Damha, Christian J Leumann, Marcel R Hollenstein
Compatibility of 5-ethynyl-2'F-ANA UTP with in vitro selection for the generation of base-modified, nuclease resistant aptamers. Organic & biomolecular chemistry 17 (35) (2019)
Jory Lietard, Dominik Ameur, Masad J Damha, Mark Manuel Somoza
High-Density RNA Microarrays Synthesized In Situ by Photolithography. Angewandte Chemie (International ed. in English) 57 (46) (2018)
Daniel O'Reilly, Robin S Stein, Mihai Burai Patrascu, Sunit Kumar Jana, Jerry Kurian, Nicolas Moitessier, Masad J Damha
Exploring Atypical Fluorine-Hydrogen Bonds and Their Effects on Nucleoside Conformations. Chemistry (Weinheim an der Bergstrasse, Germany) 24 (61) (2018)
Elise Malek-Adamian, Mihai Burai Patrascu, Sunit Kumar Jana, Saúl Martínez-Montero, Nicolas Moitessier, Masad J Damha
Adjusting the Structure of 2'-Modified Nucleosides and Oligonucleotides via C4'-α-F or C4'-α-OMe Substitution: Synthesis and Conformational Analysis. The Journal of organic chemistry 83 (17) (2018)
Elise Malek-Adamian, Dale C Guenther, Shigeo Matsuda, Saúl Martínez-Montero, Ivan Zlatev, Joel Harp, Mihai Burai Patrascu, Donald J Foster, Johans Fakhoury, Lydia Perkins, Nicolas Moitessier, Rajar M Manoharan, Nate Taneja, Anna Bisbe, Klaus Charisse, Martin Maier, Kallanthottathil G Rajeev, Martin Egli, Muthiah Manoharan, Masad J Damha
4'-C-Methoxy-2'-deoxy-2'-fluoro Modified Ribonucleotides Improve Metabolic Stability and Elicit Efficient RNAi-Mediated Gene Silencing. Journal of the American Chemical Society 139 (41) (2017)
Adam Katolik, Nathaniel E Clark, Nobuhiro Tago, Eric J Montemayor, P John Hart, Masad J Damha
Fluorescent Branched RNAs for High-Throughput Analysis of Dbr1 Enzyme Kinetics and Inhibition. ACS chemical biology 12 (3) (2017)
Hala Abou Assi, Yu Chen Lin, Israel Serrano, Carlos González, Masad J Damha
Probing Synergistic Effects of DNA Methylation and 2'-β-Fluorination on i-Motif Stability. Chemistry (Weinheim an der Bergstrasse, Germany) 24 (2) (2017)
Mihai Burai Patrascu, Elise Malek-Adamian, Masad J Damha, Nicolas Moitessier
Accurately Modeling the Conformational Preferences of Nucleosides. Journal of the American Chemical Society 139 (39) (2017)