Miguel Machuqueiro

ResearcherID Scopus Author ID Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 46

Top Venues

Journal of chemical information and modeling

Journal of chemical theory and computation

Molecules (Basel, Switzerland)

Dalton transactions (Cambridge, England : 2003)

Universidade de Lisboa Faculdade de Ciências

Universität Bern (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Universidade de Lisboa Faculdade de Ciências Jan 01 2019

Portugal

Assistant Researcher :: Quimica e Bioquímica

Universidade de Lisboa Faculdade de Ciências Jul 01 2014 - Dec 31 2018

Portugal

Invited Assitant Professor :: Química e Bioquímica

Universidade de Lisboa Faculdade de Ciencias Jun 15 2009 - Jun 14 2014

Portugal

Assistant Researcher :: Química e Bioquímica

Universidade Nova de Lisboa Instituto de Tecnologia Química e Biológica Sep 01 2003 - Jun 15 2009

Portugal

PosDoc

Education History

Universität Bern Apr 01 1999 - Apr 24 2003

Switzerland

PHD :: Chemistry and Biochemistry

Publications

Sara G F Ferreira, Manoj K Sriramoju, Shang-Te Danny Hsu, Patrícia F N Faísca, Miguel Machuqueiro
Is There a Functional Role for the Knotted Topology in Protein UCH-L1? Journal of chemical information and modeling (2024)
Filipe E P Rodrigues, Tamis Darbre, Miguel Machuqueiro
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion. Journal of chemical information and modeling (2024)
João Franco Machado, Marco Sá, Inês Pires, Miguel Tarita da Silva, Fernanda Marques, Jaime A S Coelho, Filipa Mendes, M Fátima M Piedade, Miguel Machuqueiro, Maria Angeles Jiménez, Maria Helena Garcia, João D G Correia, Tânia S Morais
Dual FGFR-targeting and pH-activatable ruthenium-peptide conjugates for targeted therapy of breast cancer. Dalton transactions (Cambridge, England : 2003) (2024)
Filipe E P Rodrigues, Tamis Darbre, Miguel Machuqueiro
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion. Journal of chemical information and modeling 64 (8) (2024)
João Franco Machado, Marco Sá, Inês Pires, Miguel Tarita da Silva, Fernanda Marques, Jaime A S Coelho, Filipa Mendes, M Fátima M Piedade, Miguel Machuqueiro, Maria Angeles Jiménez, Maria Helena Garcia, João D G Correia, Tânia S Morais
Dual FGFR-targeting and pH-activatable ruthenium-peptide conjugates for targeted therapy of breast cancer. Dalton transactions (Cambridge, England : 2003) 53 (18) (2024)
Pedro B P S Reis, Djork-Arné Clevert, Miguel Machuqueiro
PypKa server: online pKa predictions and biomolecular structure preparation with precomputed data from PDB and AlphaFold DB. Nucleic acids research 52 (W1) (2024)
Pedro B P S Reis, Djork-Arné Clevert, Miguel Machuqueiro
PypKa server: online pKa predictions and biomolecular structure preparation with precomputed data from PDB and AlphaFold DB. Nucleic acids research (2024)
Filipe E P Rodrigues, Tamis Darbre, Miguel Machuqueiro
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion. Journal of chemical information and modeling 64 (8) (2024)
Filipe E P Rodrigues, Tamis Darbre, Miguel Machuqueiro
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion. Journal of chemical information and modeling 64 (8) (2024)
João Franco Machado, Marco Sá, Inês Pires, Miguel Tarita da Silva, Fernanda Marques, Jaime A S Coelho, Filipa Mendes, M Fátima M Piedade, Miguel Machuqueiro, Maria Angeles Jiménez, Maria Helena Garcia, João D G Correia, Tânia S Morais
Dual FGFR-targeting and pH-activatable ruthenium-peptide conjugates for targeted therapy of breast cancer. Dalton transactions (Cambridge, England : 2003) 53 (18) (2024)
Filipe E P Rodrigues, Tamis Darbre, Miguel Machuqueiro
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion. Journal of chemical information and modeling 64 (8) (2024)
Pedro B P S Reis, Djork-Arné Clevert, Miguel Machuqueiro
PypKa server: online pKa predictions and biomolecular structure preparation with precomputed data from PDB and AlphaFold DB. Nucleic acids research 52 (W1) (2024)
Carlos A V Barreto, João N M Vitorino, Pedro B P S Reis, Miguel Machuqueiro, Irina S Moreira
p K a Calculations of GPCRs: Understanding Protonation States in Receptor Activation. Journal of chemical information and modeling (2024)
Filipe E P Rodrigues, Tamis Darbre, Miguel Machuqueiro
High Charge Density in Peptide Dendrimers is Required to Destabilize Membranes: Insights into Endosome Evasion. Journal of chemical information and modeling 64 (8) (2024)
Nuno F B Oliveira, Filipe E P Rodrigues, João N M Vitorino, Patrícia F N Faísca, Miguel Machuqueiro
Interfacial Dynamics and Growth Modes of β 2 -Microglobulin Dimers. Journal of chemical information and modeling (2023)
Mykola V Rodnin, Victor Vasques-Montes, Alexander V Kyrychenko, Nuno F B Oliveira, Maithri M Kashipathy, Kevin P Battaile, Justin Douglas, Scott Lovell, Miguel Machuqueiro, Alexey S Ladokhin
Histidine Protonation and Conformational Switching in Diphtheria Toxin Translocation Domain. Toxins 15 (7) (2023)
Maria João Álvaro-Martins, Violeta Railean, Filomena Martins, Miguel Machuqueiro, Rita Pacheco, Susana Santos
Synthesis and the In Vitro Evaluation of Antitumor Activity of Novel Thiobenzanilides. Molecules (Basel, Switzerland) 28 (4) (2023)
Maria João Álvaro-Martins, Violeta Railean, Filomena Martins, Miguel Machuqueiro, Rita Pacheco, Susana Santos
Synthesis and the In Vitro Evaluation of Antitumor Activity of Novel Thiobenzanilides. Molecules (Basel, Switzerland) 28 (4) (2023)
Ricardo G Teixeira, Iris C Salaroglio, Nuno F B Oliveira, João G N Sequeira, Xavier Fontrodona, Isabel Romero, Miguel Machuqueiro, Ana Isabel Tomaz, M Helena Garcia, Chiara Riganti, Andreia Valente
Fighting Multidrug Resistance with Ruthenium-Cyclopentadienyl Compounds: Unveiling the Mechanism of P-gp Inhibition. Journal of medicinal chemistry (2023)
Tomás F D Silva, Hannah Visca, Craig Klumpp, Oleg A Andreev, Yana K Reshetnyak, Miguel Machuqueiro
Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides. Journal of chemical information and modeling (2023)
Maria João Álvaro-Martins, Violeta Railean, Filomena Martins, Miguel Machuqueiro, Rita Pacheco, Susana Santos
Synthesis and the In Vitro Evaluation of Antitumor Activity of Novel Thiobenzanilides. Molecules (Basel, Switzerland) 28 (4) (2023)
Maria João Álvaro-Martins, Violeta Railean, Filomena Martins, Miguel Machuqueiro, Rita Pacheco, Susana Santos
Synthesis and the In Vitro Evaluation of Antitumor Activity of Novel Thiobenzanilides. Molecules (Basel, Switzerland) 28 (4) (2023)
Maria João Álvaro-Martins, Violeta Railean, Filomena Martins, Miguel Machuqueiro, Rita Pacheco, Susana Santos
Synthesis and the In Vitro Evaluation of Antitumor Activity of Novel Thiobenzanilides. Molecules (Basel, Switzerland) 28 (4) (2023)
Tomás F D Silva, Diogo Vila-Viçosa, Miguel Machuqueiro
Increasing the Realism of in Silico pHLIP Peptide Models with a Novel pH Gradient CpHMD Method. Journal of chemical theory and computation 18 (11) (2022)
Lucia Jimenez, Victor Mayoral-Varo, Carlos Amenábar, Judit Ortega, João G N Sequeira, Miguel Machuqueiro, Cristiana Mourato, Romano Silvestri, Andrea Angeli, Fabrizio Carta, Claudiu T Supuran, Diego Megías, Bibiana I Ferreira, Wolfgang Link
Multiplexed cellular profiling identifies an organoselenium compound as an inhibitor of CRM1-mediated nuclear export. Traffic (Copenhagen, Denmark) 23 (12) (2022)
Claudia Istrate, Jéssica Marques, Pedro Bule, Sílvia Correia, Frederico Aires-Da-Silva, Marlene Duarte, Ana Luísa Reis, Miguel Machuqueiro, Alexandre Leitão, Bruno Lourenço Victor
In Silico Characterization of African Swine Fever Virus Nucleoprotein p10 Interaction with DNA. Viruses 14 (11) (2022)
Nuno F B Oliveira, Miguel Machuqueiro
Novel US-CpHMD Protocol to Study the Protonation-Dependent Mechanism of the ATP/ADP Carrier. Journal of chemical information and modeling 62 (10) (2022)
Pedro B P S Reis, Marco Bertolini, Floriane Montanari, Walter Rocchia, Miguel Machuqueiro, Djork-Arné Clevert
A Fast and Interpretable Deep Learning Approach for Accurate Electrostatics-Driven p K a Predictions in Proteins. Journal of chemical theory and computation 18 (8) (2022)
Pedro R Magalhães, Pedro B P S Reis, Diogo Vila-Viçosa, Miguel Machuqueiro, Bruno Lourenço Victor
Optimization of an in Silico Protocol Using Probe Permeabilities to Identify Membrane Pan-Assay Interference Compounds. Journal of chemical information and modeling 62 (12) (2022)
João G N Sequeira, Filipe E P Rodrigues, Telmo G D Silva, Pedro B P S Reis, Miguel Machuqueiro
Extending the Stochastic Titration CpHMD to CHARMM36m. The journal of physical chemistry. B 126 (40) (2022)
Nícia Rosário-Ferreira, Salete J Baptista, Carlos A V Barreto, Filipe E P Rodrigues, Tomás F D Silva, Sara G F Ferreira, João N M Vitorino, Rita Melo, Bruno L Victor, Miguel Machuqueiro, Irina S Moreira
In Silico End-to-End Protein-Ligand Interaction Characterization Pipeline: The Case of SARS-CoV-2. ACS synthetic biology 10 (11) (2021)
Filipe E P Rodrigues, António J Figueira, Cláudio M Gomes, Miguel Machuqueiro
Computational Analysis of the Interactions between the S100B Extracellular Chaperone and Its Amyloid β Peptide Client. International journal of molecular sciences 22 (7) (2021)
Tomás F D Silva, Diogo Vila-Viçosa, Miguel Machuqueiro
Improved Protocol to Tackle the pH Effects on Membrane-Inserting Peptides. Journal of chemical theory and computation 17 (7) (2021)
Pedro B P S Reis, Diogo Vila-Viçosa, Walter Rocchia, Miguel Machuqueiro
PypKa: A Flexible Python Module for Poisson-Boltzmann-Based pKa Calculations. Journal of chemical information and modeling 60 (10) (2020)
Nuno F B Oliveira, Inês D S Pires, Miguel Machuqueiro
Improved GROMOS 54A7 Charge Sets for Phosphorylated Tyr, Ser, and Thr to Deal with pH-Dependent Binding Phenomena. Journal of chemical theory and computation 16 (10) (2020)
Michal Stark, Tomás F D Silva, Guy Levin, Miguel Machuqueiro, Yehuda G Assaraf
The Lysosomotropic Activity of Hydrophobic Weak Base Drugs is Mediated via Their Intercalation into the Lysosomal Membrane. Cells 9 (5) (2020)
Filipa Pires, Vananélia P N Geraldo, Bárbara Rodrigues, António de Granada-Flor, Rodrigo F M de Almeida, Osvaldo N Oliveira, Bruno L Victor, Miguel Machuqueiro, Maria Raposo
Evaluation of EGCG Loading Capacity in DMPC Membranes. Langmuir : the ACS journal of surfaces and colloids 35 (20) (2019)
Laura Guedes, Pedro B P S Reis, Miguel Machuqueiro, Asma Ressaissi, Rita Pacheco, Maria Luísa Serralheiro
Bioactivities of Centaurium erythraea (Gentianaceae) Decoctions: Antioxidant Activity, Enzyme Inhibition and Docking Studies. Molecules (Basel, Switzerland) 24 (20) (2019)
Rui J S Loureiro, Diogo Vila-Viçosa, Miguel Machuqueiro, Eugene I Shakhnovich, Patrícia F N Faísca
The Early Phase of β2m Aggregation: An Integrative Computational Study Framed on the D76N Mutant and the ΔN6 Variant. Biomolecules 9 (8) (2019)
Diogo Vila-Viçosa, Pedro B P S Reis, António M Baptista, Chris Oostenbrink, Miguel Machuqueiro
A pH Replica Exchange Scheme in the Stochastic Titration Constant-pH MD Method. Journal of chemical theory and computation 15 (5) (2019)
Tomás F D Silva, Diogo Vila-Viçosa, Pedro B P S Reis, Bruno L Victor, Matthias Diem, Chris Oostenbrink, Miguel Machuqueiro
The Impact of Using Single Atomistic Long-Range Cutoff Schemes with the GROMOS 54A7 Force Field. Journal of chemical theory and computation 14 (11) (2018)
Rafael Santana Nunes, Diogo Vila-Viçosa, Miguel Machuqueiro, Paulo J Costa
Biomolecular Simulations of Halogen Bonds with a GROMOS Force Field. Journal of chemical theory and computation 14 (10) (2018)
Catarina Dias, João P Pais, Rafael Santana Nunes, Maria-Teresa Blázquez-Sánchez, Joaquim T Marquês, Andreia F Almeida, Patrícia Serra, Nuno M Xavier, Diogo Vila-Viçosa, Miguel Machuqueiro, Ana S Viana, Alice Martins, Maria S Santos, Ana Pelerito, Ricardo Dias, Rogério Tenreiro, Maria C Oliveira, Marialessandra Contino, Nicola A Colabufo, Rodrigo F M de Almeida, Amélia Pilar Rauter
Sugar-based bactericides targeting phosphatidylethanolamine-enriched membranes. Nature communications 9 (1) (2018)
Diogo Vila-Viçosa, Tomás F D Silva, Gregory Slaybaugh, Yana K Reshetnyak, Oleg A Andreev, Miguel Machuqueiro
Membrane-Induced p Ka Shifts in wt-pHLIP and Its L16H Variant. Journal of chemical theory and computation 14 (6) (2018)
Miguel Machuqueiro, Bruno Victor, Jacek Switala, Jacylyn Villanueva, Carme Rovira, Ignacio Fita, Peter C Loewen
The Catalase Activity of Catalase-Peroxidases Is Modulated by Changes in the pKa of the Distal Histidine. Biochemistry 56 (17) (2017)
Diogo Vila-Viçosa, Bruno L Victor, Jorge Ramos, Diana Machado, Miguel Viveiros, Jacek Switala, Peter C Loewen, Ruben Leitão, Filomena Martins, Miguel Machuqueiro
Insights on the Mechanism of Action of INH-C10 as an Antitubercular Prodrug. Molecular pharmaceutics 14 (12) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Miguel Machuqueiro