Mustafa Khammash

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 21

Top Topics

Gene Expression

Top Venues

Nature communications

Science advances

PLoS computational biology

Journal of the Royal Society, Interface

This page only lists publications with an associated author ORCID identifier.

Publications

Zhou Fang, Ankit Gupta, Sant Kumar, Mustafa Khammash
Advanced methods for gene network identification and noise decomposition from single-cell data. Nature communications 15 (1) (2024)
Maurice Filo, Ankit Gupta, Mustafa Khammash
Anti-windup strategies for biomolecular control systems facilitated by model reduction theory for sequestration networks. Science advances 10 (34) (2024)
Zhou Fang, Ankit Gupta, Sant Kumar, Mustafa Khammash
Advanced methods for gene network identification and noise decomposition from single-cell data. Nature communications 15 (1) (2024)
Maurice Filo, Ankit Gupta, Mustafa Khammash
Anti-windup strategies for biomolecular control systems facilitated by model reduction theory for sequestration networks. Science advances 10 (34) (2024)
Stanislav Anastassov, Maurice Filo, Ching-Hsiang Chang, Mustafa Khammash
A cybergenetic framework for engineering intein-mediated integral feedback control systems. Nature communications 14 (1) (2023)
Stanislav Anastassov, Maurice Filo, Ching-Hsiang Chang, Mustafa Khammash
A cybergenetic framework for engineering intein-mediated integral feedback control systems. Nature communications 14 (1) (2023)
Stanislav Anastassov, Maurice Filo, Ching-Hsiang Chang, Mustafa Khammash
A cybergenetic framework for engineering intein-mediated integral feedback control systems. Nature communications 14 (1) (2023)
Ankit Gupta, Mustafa Khammash
Frequency spectra and the color of cellular noise. Nature communications 13 (1) (2022)
Maurice Filo, Sant Kumar, Mustafa Khammash
A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance. Nature communications 13 (1) (2022)
Coralie Dessauges, Jan Mikelson, Maciej Dobrzyński, Marc-Antoine Jacques, Agne Frismantiene, Paolo Armando Gagliardi, Mustafa Khammash, Olivier Pertz
Optogenetic actuator - ERK biosensor circuits identify MAPK network nodes that shape ERK dynamics. Molecular systems biology 18 (6) (2022)
Joaquín Gutiérrez Mena, Sant Kumar, Mustafa Khammash
Dynamic cybergenetic control of bacterial co-culture composition via optogenetic feedback. Nature communications 13 (1) (2022)
Sant Kumar, Marc Rullan, Mustafa Khammash
Rapid prototyping and design of cybergenetic single-cell controllers. Nature communications 12 (1) (2021)
Edoardo Romano, Armin Baumschlager, Emir Bora Akmeriç, Navaneethan Palanisamy, Moustafa Houmani, Gregor Schmidt, Mehmet Ali Öztürk, Leonard Ernst, Mustafa Khammash, Barbara Di Ventura
Engineering AraC to make it responsive to light instead of arabinose. Nature chemical biology 17 (7) (2021)
Ankit Gupta, Christoph Schwab, Mustafa Khammash
DeepCME: A deep learning framework for computing solution statistics of the chemical master equation. PLoS computational biology 17 (12) (2021)
Armin Baumschlager, Mustafa Khammash
Synthetic Biological Approaches for Optogenetics and Tools for Transcriptional Light-Control in Bacteria. Advanced biology 5 (5) (2021)
Jan Mikelson, Mustafa Khammash
Likelihood-free nested sampling for parameter inference of biochemical reaction networks. PLoS computational biology 16 (10) (2020)
Timothy Frei, Federica Cella, Fabiana Tedeschi, Joaquín Gutiérrez, Guy-Bart V Stan, Mustafa Khammash, Velia Siciliano
Characterization and mitigation of gene expression burden in mammalian cells. Nature communications 11 (1) (2020)
Patrik Dürrenberger, Ankit Gupta, Mustafa Khammash
A finite state projection method for steady-state sensitivity analysis of stochastic reaction networks. The Journal of chemical physics 150 (13) (2019)
Ankit Gupta, Andreas Milias-Argeitis, Mustafa Khammash
Dynamic disorder in simple enzymatic reactions induces stochastic amplification of substrate. Journal of the Royal Society, Interface 14 (132) (2018)
Ankit Gupta, Mustafa Khammash
Sensitivity Analysis for Multiscale Stochastic Reaction Networks Using Hybrid Approximations. Bulletin of mathematical biology 81 (8) (2018)
Andreas Milias-Argeitis, Stefan Engblom, Pavol Bauer, Mustafa Khammash
Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks. Journal of the Royal Society, Interface 12 (113) (2016)