Naama Barkai

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 27

Top Topics

Transcription Factor

Embryonic Stem Cells

Saccharomyces Cerevisiae

Top Venues

Nucleic acids research

Nature communications

Genome research

This page only lists publications with an associated author ORCID identifier.

Publications

Tamar Gera, Divya Krishna Kumar, Gilad Yaakov, Naama Barkai, Felix Jonas
ChEC-Seq: A Comprehensive Guide for Scalable and Cost-Efficient Genome-Wide Profiling in Saccharomyces cerevisiae. Methods in molecular biology (Clifton, N.J.) 2846 (2024)
Michal Chappleboim, Segev Naveh-Tassa, Miri Carmi, Yaakov Levy, Naama Barkai
Ordered and disordered regions of the Origin Recognition Complex direct differential in vivo binding at distinct motif sequences. Nucleic acids research 52 (10) (2024)
Vladimir Mindel, Sagie Brodsky, Aileen Cohen, Wajd Manadre, Felix Jonas, Miri Carmi, Naama Barkai
Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars. Nucleic acids research 52 (5) (2024)
Bohdana Hurieva, Divya Krishna Kumar, Rotem Morag, Offir Lupo, Miri Carmi, Naama Barkai, Felix Jonas
Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types. Nucleic acids research (2024)
Bohdana Hurieva, Divya Krishna Kumar, Rotem Morag, Offir Lupo, Miri Carmi, Naama Barkai, Felix Jonas
Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types. Nucleic acids research 52 (15) (2024)
Michal Chappleboim, Segev Naveh-Tassa, Miri Carmi, Yaakov Levy, Naama Barkai
Ordered and disordered regions of the Origin Recognition Complex direct differential in vivo binding at distinct motif sequences. Nucleic acids research 52 (10) (2024)
Michal Chappleboim, Segev Naveh-Tassa, Miri Carmi, Yaakov Levy, Naama Barkai
Ordered and disordered regions of the Origin Recognition Complex direct differential in vivo binding at distinct motif sequences. Nucleic acids research (2024)
Bohdana Hurieva, Divya Krishna Kumar, Rotem Morag, Offir Lupo, Miri Carmi, Naama Barkai, Felix Jonas
Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types. Nucleic acids research 52 (15) (2024)
Vladimir Mindel, Sagie Brodsky, Hadas Yung, Wajd Manadre, Naama Barkai
Revisiting the model for coactivator recruitment: Med15 can select its target sites independent of promoter-bound transcription factors. Nucleic acids research (2024)
Michal Chappleboim, Segev Naveh-Tassa, Miri Carmi, Yaakov Levy, Naama Barkai
Ordered and disordered regions of the Origin Recognition Complex direct differential in vivo binding at distinct motif sequences. Nucleic acids research 52 (10) (2024)
Bohdana Hurieva, Divya Krishna Kumar, Rotem Morag, Offir Lupo, Miri Carmi, Naama Barkai, Felix Jonas
Disordered sequences of transcription factors regulate genomic binding by integrating diverse sequence grammars and interaction types. Nucleic acids research 52 (15) (2024)
Vladimir Mindel, Sagie Brodsky, Aileen Cohen, Wajd Manadre, Felix Jonas, Miri Carmi, Naama Barkai
Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars. Nucleic acids research 52 (5) (2024)
Vladimir Mindel, Sagie Brodsky, Aileen Cohen, Wajd Manadre, Felix Jonas, Miri Carmi, Naama Barkai
Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars. Nucleic acids research 52 (5) (2024)
Marko Dunjić, Felix Jonas, Gilad Yaakov, Roye More, Yoav Mayshar, Yoach Rais, Ayelet-Hashahar Orenbuch, Saifeng Cheng, Naama Barkai, Yonatan Stelzer
Histone exchange sensors reveal variant specific dynamics in mouse embryonic stem cells. Nature communications 14 (1) (2023)
Marko Dunjić, Felix Jonas, Gilad Yaakov, Roye More, Yoav Mayshar, Yoach Rais, Ayelet-Hashahar Orenbuch, Saifeng Cheng, Naama Barkai, Yonatan Stelzer
Histone exchange sensors reveal variant specific dynamics in mouse embryonic stem cells. Nature communications 14 (1) (2023)
Marko Dunjić, Felix Jonas, Gilad Yaakov, Roye More, Yoav Mayshar, Yoach Rais, Ayelet-Hashahar Orenbuch, Saifeng Cheng, Naama Barkai, Yonatan Stelzer
Histone exchange sensors reveal variant specific dynamics in mouse embryonic stem cells. Nature communications 14 (1) (2023)
Felix Jonas, Matan Vidavski, Eli Benuck, Naama Barkai, Gilad Yaakov
Nucleosome retention by histone chaperones and remodelers occludes pervasive DNA-protein binding. Nucleic acids research (2023)
Felix Jonas, Miri Carmi, Beniamin Krupkin, Joseph Steinberger, Sagie Brodsky, Tamar Jana, Naama Barkai
The molecular grammar of protein disorder guiding genome-binding locations. Nucleic acids research (2023)
Vladimir Mindel, Sagie Brodsky, Aileen Cohen, Wajd Manadre, Felix Jonas, Miri Carmi, Naama Barkai
Intrinsically disordered regions of the Msn2 transcription factor encode multiple functions using interwoven sequence grammars. Nucleic acids research (2023)
Felix Jonas, Gilad Yaakov, Naama Barkai
Rtt109 promotes nucleosome replacement ahead of the replication fork. Genome research 32 (6) (2022)
Tamar Gera, Felix Jonas, Roye More, Naama Barkai
Evolution of binding preferences among whole-genome duplicated transcription factors. eLife 11 (2022)
Gilad Yaakov, Felix Jonas, Naama Barkai
Measurement of histone replacement dynamics with genetically encoded exchange timers in yeast. Nature biotechnology 39 (11) (2021)
Eyal Metzl-Raz, Moshe Kafri, Gilad Yaakov, Naama Barkai
Gene Transcription as a Limiting Factor in Protein Production and Cell Growth. G3 (Bethesda, Md.) 10 (9) (2020)
Michal Chapal, Sefi Mintzer, Sagie Brodsky, Miri Carmi, Naama Barkai
Resolving noise-control conflict by gene duplication. PLoS biology 17 (11) (2019)
Neta Rahimi, Inna Averbukh, Shari Carmon, Eyal D Schejter, Naama Barkai, Ben-Zion Shilo
Dynamics of Spaetzle morphogen shuttling in the Drosophila embryo shapes gastrulation patterning. Development (Cambridge, England) 146 (21) (2019)
Inna Averbukh, Sen-Lin Lai, Chris Q Doe, Naama Barkai
A repressor-decay timer for robust temporal patterning in embryonic Drosophila neuroblast lineages. eLife 7 (2018)
Eyal Metzl-Raz, Moshe Kafri, Gilad Yaakov, Ilya Soifer, Yonat Gurvich, Naama Barkai
Principles of cellular resource allocation revealed by condition-dependent proteome profiling. eLife 6 (2017)